生物技术通报 ›› 2013, Vol. 0 ›› Issue (9): 77-83.

• 研究报告 • 上一篇    下一篇

盐藻小G蛋白基因(DsRab)的克隆及在高盐胁迫下的表达分析

余祝君, 柴晓杰, 张晓琳, 张婷, 薛飞   

  1. 大连海洋大学 农业部北方海水增养殖重点实验室 辽宁省海洋生物资源恢复与生境修复重点实验室,大连 116023
  • 收稿日期:2013-04-15 修回日期:2013-09-05 出版日期:2013-09-05 发布日期:2013-09-06
  • 作者简介:柴晓杰,女,教授,博士,研究方向:海洋生物分子生物学;E-mail:cxj63@126.com
  • 基金资助:
    余祝君,女,硕士研究生,研究方向:生物化学与分子生物学;E-mail:yzj.qu@qq.com

Cloning and Expression Analysis of Small GTP-binding Protein Gene from Dunaliella salina(DsRab)Under Salt Stress

Yu Zhujun Chai Xiaojie Zhang Xiaolin Zhang Ting Xue Fei   

  1. Key Laboratory of Mariculture & Stock Enhancement in North China’s Sea,Ministry of Agriculture,Key Laboratory of Marine Bio-resoursce Restoration and Habitat Reparation in Liaoning Province,Dalian Ocean University,Dalian 116023
  • Received:2013-04-15 Revised:2013-09-05 Published:2013-09-05 Online:2013-09-06

摘要: 采用RT-PCR和RACE技术扩增了杜氏盐藻小G蛋白基因cDNA全长序列(GenBank Accession No. JN989548),命名为DsRab,对其进行生物信息学分析,并通过实时荧光定量PCR方法检测盐胁迫下该基因的表达情况。结果表明,DsRab基因的cDNA全长为1 299 bp,开放阅读框(ORF)为612 bp,编码203个氨基酸,5'非编码区78 bp,3'非编码区609 bp;保守性结构域分析可知编码的小G蛋白有4个GTP/GDP保守结构域,1个效应区、1个羧基端的半胱氨酸结构域和5个Rab亚家族共有的结构域;二级结构预测表明该蛋白有32.02%的α-螺旋,23.65%的伸展片段,44.33%的自由卷曲,三维建模成功;比对分析发现DsRab蛋白与多种生物的Ypt/Rab的氨基酸序列具有较高的同源性。荧光定量PCR结果表明,盐藻在高盐(3.0 mol/L)胁迫下,DsRab基因表达量显著上调,1 h后表达量达到最大值,为正常培养下对照组(0 h)的4.9倍,差异极显著(P<0.01)。

Abstract: Dunaliella salina small GTP-binding Protein Gene(GenBank Accession No.JN989548)was cloned by RT-PCR and RACE technology, named DsRab, the bioinformatics-analysis was performed, and the DsRab gene expression pattern was studied under 3 mol/L NaCl by Real-time quantitative RT-PCR method. The results showed that the full length of cDNA for DsRab Gene was 1 299 bp, which contains 78 bp 5'UTR, 609 bp 3'UTR and 612 bp ORF.The ORF codes a 203 amino acids protein with four GTP/GDP binding conserved domains, one effector domain, a cysteine residues at the COOH-terminus, and five common domain of Rab sub-family;Secondary structure prediction indicated that the α-helix, β-strands and random coil in it were 32.02% of, 23.65% and 44.33%. Protein homologue analysis showed that the DsRab shared high homology with Ypt/Rab from other species. The real-time quantitative PCR(RT-PCR)revealed that the expression of DsRab gene was increased by 4.9-fold under 3 mol/L NaCl comparising with that under normal level(including 1.5 mol/L NaCl)(P<0.01). Key words: Dunaliella salina Small GTP-binding protein gene RACE Bioinformatics-analysis QRT-PCR