Biotechnology Bulletin ›› 2026, Vol. 42 ›› Issue (2): 17-29.doi: 10.13560/j.cnki.biotech.bull.1985.2025-0997
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Received:2025-09-18
Online:2026-02-26
Published:2026-03-17
Contact:
LI Meng
E-mail:jinjiezhou@szu.edu.cn;limeng848@szu.edu.cn
ZHOU Jin-jie, LI Meng. Energy Metabolism and Extracellular Electron Transfer of Methanosarcina and Methanothrix[J]. Biotechnology Bulletin, 2026, 42(2): 17-29.
项目 Item | Ⅰ型甲烷八叠球菌 Type Ⅰ Methanosarcina | Ⅱ型甲烷八叠球菌 Type Ⅱ Methanosarcina | 甲烷丝菌 Methanothrix | |
|---|---|---|---|---|
| 形态 | 不规则球形,直径0.8-4.0 μm,常形成多细胞团聚体 | 杆形,长2.0-6.0 μm,宽0.8-1.3 μm,包裹于管状鞘结构中 | ||
| 底物 | 乙酸,甲基化合物,H2/CO2,甲基化合物/H2 | 乙酸,甲基化合物 | 乙酸 | |
| 乙酸亲和力 | 低 | 低 | 高 | |
| 生长速率 | 快 | 快 | 慢 | |
| 乙酸降解关键酶 | Ack, Pta | Ack, Pta | Acs | |
| 电子传递系统组成 | Ech, Frh, Vht, Fpo, Hdr, Mtr | Rnf, MmcA, Fpo, Hdr, Mtr | Fpo, Hdr, Mtr | |
| 胞外电子传递 | ||||
| 吸收电子 | DIET | + | + | + |
| Fe(0) | + | + | + | |
| 316L stainless steel | + | NA1 | + | |
| 释放电子 | Fe(Ⅲ) | + | + | NA1 |
| AQDS | + | + | NA1 | |
| 代表种 | M. barkeri | M. acetivorans | Mx. soehngenii | |
Table 1 Physiological and metabolic characteristics of aceticlastic methanogens
项目 Item | Ⅰ型甲烷八叠球菌 Type Ⅰ Methanosarcina | Ⅱ型甲烷八叠球菌 Type Ⅱ Methanosarcina | 甲烷丝菌 Methanothrix | |
|---|---|---|---|---|
| 形态 | 不规则球形,直径0.8-4.0 μm,常形成多细胞团聚体 | 杆形,长2.0-6.0 μm,宽0.8-1.3 μm,包裹于管状鞘结构中 | ||
| 底物 | 乙酸,甲基化合物,H2/CO2,甲基化合物/H2 | 乙酸,甲基化合物 | 乙酸 | |
| 乙酸亲和力 | 低 | 低 | 高 | |
| 生长速率 | 快 | 快 | 慢 | |
| 乙酸降解关键酶 | Ack, Pta | Ack, Pta | Acs | |
| 电子传递系统组成 | Ech, Frh, Vht, Fpo, Hdr, Mtr | Rnf, MmcA, Fpo, Hdr, Mtr | Fpo, Hdr, Mtr | |
| 胞外电子传递 | ||||
| 吸收电子 | DIET | + | + | + |
| Fe(0) | + | + | + | |
| 316L stainless steel | + | NA1 | + | |
| 释放电子 | Fe(Ⅲ) | + | + | NA1 |
| AQDS | + | + | NA1 | |
| 代表种 | M. barkeri | M. acetivorans | Mx. soehngenii | |
产甲烷古菌 Methanogen | 电子供体细菌 Electro-donating bacteria | 电子供体 Electron donor | 产甲烷古菌DIET关键蛋白 Key protein DIET of methanogenic archaeon | 参考文献 Reference |
|---|---|---|---|---|
| Type Ⅰ Methanosarcina | ||||
| M. barkeri | Geobacter metallireducens Geobacter grbiciae Rhodoferax ferrireducens Rhodopseudomonas palustris1 | Ethanol Ethanol Glucose Light, thiosulfate | Fpo, HdrABC NA2 NA2 Ech, Vht, HdrED, Fpo | [ [ [ [ |
| M. mazei | G. metallireducens | Ethanol | NA2 | [ |
| Type Ⅱ Methanosarcina | ||||
| M. acetivorans | G. metallireducens | Ethanol | Fpo, MmcA, Rnf, HdrED | [ |
| M. horonobensis | G. metallireducens | Ethanol | NA2 | [ |
| Methanothrix | ||||
| Mx. harundinacea | G. metallireducens Geobacter hydrogenophilus Rhodoferax ferrireducens | Ethanol, propanol, butanol Ethanol Glucose | HdrED NA2 NA2 | [ [ [ |
| Mx. thermoacetophila | G. metallireducens | Ethanol | MspA, Sqp, Fpo, HdrED, HdrABC | [ |
| Mx. soehngenii | G. metallireducens | Ethanol | NA2 | [ |
Table 2 Summary of aceticlastic methanogen relying on direct interspecies electron transfer for CO2 reduction to methane
产甲烷古菌 Methanogen | 电子供体细菌 Electro-donating bacteria | 电子供体 Electron donor | 产甲烷古菌DIET关键蛋白 Key protein DIET of methanogenic archaeon | 参考文献 Reference |
|---|---|---|---|---|
| Type Ⅰ Methanosarcina | ||||
| M. barkeri | Geobacter metallireducens Geobacter grbiciae Rhodoferax ferrireducens Rhodopseudomonas palustris1 | Ethanol Ethanol Glucose Light, thiosulfate | Fpo, HdrABC NA2 NA2 Ech, Vht, HdrED, Fpo | [ [ [ [ |
| M. mazei | G. metallireducens | Ethanol | NA2 | [ |
| Type Ⅱ Methanosarcina | ||||
| M. acetivorans | G. metallireducens | Ethanol | Fpo, MmcA, Rnf, HdrED | [ |
| M. horonobensis | G. metallireducens | Ethanol | NA2 | [ |
| Methanothrix | ||||
| Mx. harundinacea | G. metallireducens Geobacter hydrogenophilus Rhodoferax ferrireducens | Ethanol, propanol, butanol Ethanol Glucose | HdrED NA2 NA2 | [ [ [ |
| Mx. thermoacetophila | G. metallireducens | Ethanol | MspA, Sqp, Fpo, HdrED, HdrABC | [ |
| Mx. soehngenii | G. metallireducens | Ethanol | NA2 | [ |
| [1] | Laboratory NGM. The NOAA Annual Greenhouse Gas Index (AGGI) [R]. Colorado, USA: NOAA Global Monitoring Laboratory, 2024. |
| [2] | EPA U. Overview of Greenhouse Gases [R]. Washington, DC: USA: U.S. Environmental Protection Agency, 2025. |
| [3] | Lyu Z, Shao NN, Akinyemi T, et al. Methanogenesis [J]. Curr Biol, 2018, 28(13): R727-R732. |
| [4] | Wu KJ, Zhou L, Tahon G, et al. Isolation of a methyl-reducing methanogen outside the euryarchaeota [J]. Nature, 2024, 632(8027): 1124-1130. |
| [5] | Kohtz AJ, Petrosian N, Krukenberg V, et al. Cultivation and visualization of a methanogen of the Phylum Thermoproteota [J]. Nature, 2024, 632(8027): 1118-1123. |
| [6] | Holmes DE, Smith JA. Biologically produced methane as a renewable energy source [M]//Advances in Applied Microbiology. Amsterdam: Elsevier, 2016: 1-61. |
| [7] | Thauer RK, Kaster AK, Seedorf H, et al. Methanogenic archaea: ecologically relevant differences in energy conservation [J]. Nat Rev Microbiol, 2008, 6(8): 579-591. |
| [8] | Zhou Z, Zhang CJ, Liu PF, et al. Non-syntrophic methanogenic hydrocarbon degradation by an archaeal species [J]. Nature, 2022, 601(7892): 257-262. |
| [9] | Mayumi D, Mochimaru H, Tamaki H, et al. Methane production from coal by a single methanogen [J]. Science, 2016, 354(6309): 222-225. |
| [10] | Evans PN, Boyd JA, Leu AO, et al. An evolving view of methane metabolism in the Archaea [J]. Nat Rev Microbiol, 2019, 17(4): 219-232. |
| [11] | Wolfe RS. An historical overview of methanogenesis [M]//Methanogenesis. Boston, MA: Springer US, 1993: 1-32. |
| [12] | Zhou JJ, Holmes DE, Tang H-Y, et al. Correlation of key physiological properties of Methanosarcina isolates with environment of origin [J]. Appl Environ Microbiol, 2021, 87(13): e00731-21. |
| [13] | Wagner D. Methanosarcina [M]// Bergey’s Manual of Systematics of Archaea and Bacteria. New York: John Wiley & Sons, Inc, 2020: 1-23. |
| [14] | Rotaru AE, Gharib G, Jabaley A, et al. Cell surface differences within the genus Methanosarcina shape interactions with the extracellular environment [J]. J Bacteriol, 2025, 207(8): e00112-25. |
| [15] | Parte AC, Sardà Carbasse J, Meier-Kolthoff JP, et al. List of prokaryotic names with standing in nomenclature (LPSN) moves to the DSMZ [J]. Int J Syst Evol Microbiol, 2020, 70(11): 5607-5612. |
| [16] | Huser BA, Wuhrmann K, Zehnder AJB. Methanothrix soehngenii gen. nov. sp. nov., a new acetotrophic non-hydrogen-oxidizing methane bacterium [J]. Arch Microbiol, 1982, 132(1): 1-9. |
| [17] | Smith KS, Ingram-Smith C. Methanosaeta, the forgotten methanogen? [J]. Trends Microbiol, 2007, 15(4): 150-155. |
| [18] | Akinyemi TS, Shao N, Whitman WB. Methanothrix [M]// Bergey’s Manual of Systematics of Archaea and Bacteria. New York: John Wiley & Sons, Inc, 2020: 1-12. |
| [19] | Carr SA, Schubotz F, Dunbar RB, et al. Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments [J]. ISME J, 2018, 12(2): 330-342. |
| [20] | Romanowicz KJ, Crump BC, Kling GW. Rainfall alters permafrost soil redox conditions, but meta-omics show divergent microbial community responses by tundra type in the Arctic [J]. Soil Syst, 2021, 5(1): 17. |
| [21] | Lynes MM, Krukenberg V, Jay ZJ, et al. Diversity and function of methyl-coenzyme M reductase-encoding Archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments [J]. ISME Commun, 2023, 3(1): 22. |
| [22] | Cecilia M Chiriac AB. Microbial composition and diversity patterns in deep hyperthermal aquifers from the western plain of Romania [J]. Microb Ecol, 2018, 75(1): 38-51. |
| [23] | Khomyakova MA, Merkel AY, Slobodkin AI, et al. Phenotypic and genomic characterization of the first alkaliphilic aceticlastic methanogens and proposal of a novel genus Methanocrinis gen.nov. within the family Methanotrichaceae [J]. Front Microbiol, 2023, 14: 1233691. |
| [24] | Schlegel K, Welte C, Deppenmeier U, et al. Electron transport during aceticlastic methanogenesis by Methanosarcina acetivorans involves a sodium-translocating Rnf complex [J]. FEBS J, 2012, 279(24): 4444-4452. |
| [25] | Ribas D, Soares-Silva I, Vieira D, et al. The acetate uptake transporter family motif "NPAPLGL(M/S)" is essential for substrate uptake [J]. Fungal Genet Biol, 2019, 122: 1-10. |
| [26] | Ferry JG. Methanosarcina acetivorans: a model for mechanistic understanding of aceticlastic and reverse methanogenesis [J]. Front Microbiol, 2020, 11: 1806. |
| [27] | Jetten MSM, Stams AJM, Zehnder AJB. Methanogenesis from acetate: a comparison of the acetate metabolism in Methanothrix soehngenii and Methanosarcina spp. [J]. FEMS Microbiol Lett, 1992, 88(3/4): 181-197. |
| [28] | Rohlin L, Gunsalus RP. Carbon-dependent control of electron transfer and central carbon pathway genes for methane biosynthesis in the Archaean, Methanosarcina acetivorans strain C2A [J]. BMC Microbiol, 2010, 10(1): 62. |
| [29] | Zhu JX, Zheng HJ, Ai GM, et al. The genome characteristics and predicted function of methyl-group oxidation pathway in the obligate aceticlastic methanogens, Methanosaeta spp [J]. PLoS One, 2012, 7(5): e36756. |
| [30] | Downing BE, Nayak DD. Innovations in the electron transport chain fuel archaeal methane metabolism [J]. Trends Biochem Sci, 2025, 50(5): 425-437. |
| [31] | Guss AM, Kulkarni G, Metcalf WW. Differences in hydrogenase gene expression between Methanosarcina acetivorans and Methanosarcina barkeri [J]. J Bacteriol, 2009, 191(8): 2826-2833. |
| [32] | Bao JC, Somvanshi T, Tian YF, et al. Nature AND nurture: enabling formate-dependent growth in Methanosarcina acetivorans [J]. FEBS J, 2025, 292(9): 2251-2271. |
| [33] | Zinder SH, Anguish T. Carbon monoxide, hydrogen, and formate metabolism during methanogenesis from acetate by thermophilic cultures of Methanosarcina and Methanothrix strains [J]. Appl Environ Microbiol, 1992, 58(10): 3323-3329. |
| [34] | Guss AM, Mukhopadhyay B, Zhang JK, et al. Genetic analysis of mch mutants in two Methanosarcina species demonstrates multiple roles for the methanopterin-dependent C-1 oxidation/reduction pathway and differences in H2 metabolism between closely related species [J]. Mol Microbiol, 2005, 55(6): 1671-1680. |
| [35] | Kono T, Mehrotra S, Endo C, et al. A RuBisCO-mediated carbon metabolic pathway in methanogenic Archaea [J]. Nat Commun, 2017, 8: 14007. |
| [36] | Zhou JJ, Smith JA, Li M, et al. Methane production by Methanothrix thermoacetophila via direct interspecies electron transfer with Geobacter metallireducens [J]. mBio, 2023, 14(4) |
| [37] | Goenrich M, Thauer RK, Yurimoto H, et al. Formaldehyde activating enzyme (Fae) and hexulose-6-phosphate synthase (Hps) in Methanosarcina barkeri: a possible function in ribose-5-phosphate biosynthesis [J]. Arch Microbiol, 2005, 184(1): 41-48. |
| [38] | Buan NR, Metcalf WW. Methanogenesis by Methanosarcina acetivorans involves two structurally and functionally distinct classes of heterodisulfide reductase [J]. Mol Microbiol, 2010, 75(4): 843-853. |
| [39] | Gottschalk G, Thauer RK. The Na+-translocating methyltransferase complex from methanogenic Archaea [J]. Biochim Biophys Acta Bioenerg, 2001, 1505(1): 28-36. |
| [40] | Kulkarni G, Mand TD, Metcalf WW. Energy conservation via hydrogen cycling in the methanogenic archaeon Methanosarcina barkeri [J]. mBio, 2018, 9(4): e01256-18. |
| [41] | Lovley DR. The hydrogen economy of Methanosarcina barkeri: life in the fast lane [J]. J Bacteriol, 2018, 200(20). |
| [42] | Meuer J, Kuettner HC, Zhang JK, et al. Genetic analysis of the archaeon Methanosarcina barkeri Fusaro reveals a central role for Ech hydrogenase and ferredoxin in methanogenesis and carbon fixation [J]. Proc Natl Acad Sci U S A, 2002, 99(8): 5632-5637. |
| [43] | Welte C, Krätzer C, Deppenmeier U. Involvement of Ech hydrogenase in energy conservation of Methanosarcina mazei [J]. FEBS J, 2010, 277(16): 3396-3403. |
| [44] | Welte C, Deppenmeier U. Bioenergetics and anaerobic respiratory chains of aceticlastic methanogens [J]. Biochim Biophys Acta Bioenerg, 2014, 1837(7): 1130-1147. |
| [45] | Thauer RK, Kaster AK, Goenrich M, et al. Hydrogenases from methanogenic Archaea, nickel, a novel cofactor, and H2 storage [J]. Annu Rev Biochem, 2010, 79: 507-536. |
| [46] | Noguera DR, Brusseau GA, Rittmann BE, et al. A unified model describing the role of hydrogen in the growth of Desulfovibrio vulgaris under different environmental conditions [J]. Biotechnol Bioeng, 1998, 59(6): 732-746. |
| [47] | Kulkarni G, Kridelbaugh DM, Guss AM, et al. Hydrogen is a preferred intermediate in the energy-conserving electron transport chain of Methanosarcina barkeri [J]. Proc Natl Acad Sci U S A, 2009, 106(37): 15915-15920. |
| [48] | Holmes DE, Ueki T, Tang HY, et al. A membrane-bound cytochrome enables Methanosarcina acetivorans to conserve energy from extracellular electron transfer [J]. mBio, 2019, 10(4). |
| [49] | Holmes DE, Zhou JJ, Ueki T, et al. Mechanisms for electron uptake by Methanosarcina acetivorans during direct interspecies electron transfer [J]. mBio, 2021, 12(5) |
| [50] | Prakash D, Iyer PR, Suharti S, et al. Structure and function of an unusual flavodoxin from the domain Archaea [J]. Proc Natl Acad Sci U S A, 2019, 116(51): 25917-25922. |
| [51] | Jasso-Chávez R, Diaz-Perez C, Rodríguez-Zavala JS, et al. Functional role of MrpA in the MrpABCDEFG Na+/H+ antiporter complex from the archaeon Methanosarcina acetivorans [J]. J Bacteriol, 2017, 199(2). |
| [52] | Bäumer S, Ide T, Jacobi C, et al. The F420H2 dehydrogenase fromMethanosarcina mazei is a redox-driven proton pump closely related to NADH dehydrogenases [J]. J Biol Chem, 2000, 275(24): 17968-17973. |
| [53] | Welte C, Deppenmeier U. Membrane-bound electron transport in Methanosaeta thermophila [J]. J Bacteriol, 2011, 193(11): 2868-2870. |
| [54] | Gao KL, Lu YH. Putative extracellular electron transfer in methanogenic archaea [J]. Front Microbiol, 2021, 12: 611739. |
| [55] | Summers ZM, Fogarty HE, Leang C, et al. Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria [J]. Science, 2010, 330(6009): 1413-1415. |
| [56] | Liu FH, Rotaru AE, Shrestha PM, et al. Promoting direct interspecies electron transfer with activated carbon [J]. Energy Environ Sci, 2012, 5(10): 8982-8989. |
| [57] | Rotaru AE, Shrestha PM, Liu FH, et al. A new model for electron flow during anaerobic digestion: direct interspecies electron transfer to Methanosaeta for the reduction of carbon dioxide to methane [J]. Energy Environ Sci, 2014, 7(1): 408-415. |
| [58] | Huang LY, Liu X, Zhang ZS, et al. Light-driven carbon dioxide reduction to methane by Methanosarcina barkeri in an electric syntrophic coculture [J]. ISME J, 2022, 16(2): 370-377. |
| [59] | Yee MO, Rotaru AE. Extracellular electron uptake in Methanosarcinales is independent of multiheme c-type cytochromes [J]. Sci Rep, 2020, 10: 372. |
| [60] | Rotaru AE, Shrestha PM, Liu FH, et al. Direct interspecies electron transfer between Geobacter metallireducens and Methanosarcina barkeri [J]. Appl Environ Microbiol, 2014, 80(15): 4599-4605. |
| [61] | Deng PB, Wang LL, Li X, et al. Geobacter grbiciae—a new electron donor in the formation of co-cultures via direct interspecies electron transfer [J]. Microbiol Res, 2023, 14(4): 1774-1787. |
| [62] | Yee MO, Snoeyenbos-West OL, Thamdrup B, et al. Extracellular electron uptake by two Methanosarcina species [J]. Front Energy Res, 2019, 7: 29. |
| [63] | Wang LY, Nevin KP, Woodard TL, et al. Expanding the diet for DIET: electron donors supporting direct interspecies electron transfer (DIET) in defined co-cultures [J]. Front Microbiol, 2016, 7: 236. |
| [64] | Holmes DE, Rotaru AE, Ueki T, et al. Electron and proton flux for carbon dioxide reduction in Methanosarcina barkeri during direct interspecies electron transfer [J]. Front Microbiol, 2018, 9: 3109. |
| [65] | Zheng SL, Zhang HX, Li Y, et al. Co-occurrence of Methanosarcina mazei and Geobacteraceae in an iron (III)-reducing enrichment culture [J]. Front Microbiol, 2015, 6: 941. |
| [66] | Holmes DE, Shrestha PM, Walker DJF, et al. Metatranscriptomic evidence for direct interspecies electron transfer between Geobacter and Methanothrix species in methanogenic rice paddy soils [J]. Appl Environ Microbiol, 2017, 83(9): e00223-17. |
| [67] | Akram J, Song C, El Mashad HM, et al. Advances in microbial community, mechanisms and stimulation effects of direct interspecies electron transfer in anaerobic digestion [J]. Biotechnol Adv, 2024, 76: 108398. |
| [68] | Zhao ZQ, Li Y, Zhang YB, et al. Sparking anaerobic digestion: promoting direct interspecies electron transfer to enhance methane production [J]. iScience, 2020, 23(12): 101794. |
| [69] | Xu DK, Gu TY, Lovley DR. Microbially mediated metal corrosion [J]. Nat Rev Microbiol, 2023, 21(11): 705-718. |
| [70] | Holmes DE, Tang HY, Woodard T, et al. Cytochrome-mediated direct electron uptake from metallic iron by Methanosarcina acetivorans [J]. mLife, 2022, 1(4): 443-447. |
| [71] | Holmes DE, Woodard TL, Smith JA, et al. Electrobiocorrosion by microbes without outer-surface cytochromes [J]. mLife, 2024, 3(1): 110-118. |
| [72] | Prakash D, Chauhan SS, Ferry JG. Life on the thermodynamic edge: Respiratory growth of an acetotrophic methanogen [J]. Sci Adv, 2019, 5(8): eaaw9059. |
| [73] | Gupta D, Chen KY, Elliott SJ, et al. MmcA is an electron conduit that facilitates both intracellular and extracellular electron transport in Methanosarcina acetivorans [J]. Nat Commun, 2024, 15(1): 3300. |
| [74] | Song YX, Huang R, Li L, et al. Humic acid-dependent respiratory growth of Methanosarcina acetivorans involves pyrroloquinoline quinone [J]. ISME J, 2023, 17(11): 2103-2111. |
| [75] | Yang Z, Lu YH. Coupling methanogenesis with iron reduction by acetotrophic Methanosarcina mazei zm-15 [J]. Environ Microbiol Rep, 2022, 14(5): 804-811. |
| [76] | Timmers PHA, Welte CU, Koehorst JJ, et al. Reverse methanogenesis and respiration in methanotrophic archaea [J]. Archaea, 2017, 2017(1): 1654237. |
| [77] | Wang FP, Zhang Y, Chen Y, et al. Methanotrophic Archaea possessing diverging methane-oxidizing and electron-transporting pathways [J]. ISME J, 2014, 8(5): 1069-1078. |
| [78] | Yan Z, Joshi P, Gorski CA, et al. A biochemical framework for anaerobic oxidation of methane driven by Fe(Ⅲ)-dependent respiration [J]. Nat Commun, 2018, 9: 1642. |
| [79] | Yan Z, Du KF, Yan YF, et al. Respiration-driven methanotrophic growth of diverse marine methanogens [J]. Proc Natl Acad Sci USA, 2023, 120(39): e2303179120. |
| [80] | Berger S, Welte C, Deppenmeier U. Acetate activation in Methanosaeta thermophila: characterization of the key enzymes pyrophosphatase and acetyl-CoA synthetase [J]. Archaea, 2012, 2012(1): 315153. |
| [81] | Kohler PRA, Metcalf WW. Genetic manipulation of Methanosarcina spp. [J]. Front Microbiol, 2012, 3: 259. |
| [82] | Zhu P, Somvanshi T, Bao JC, et al. CRISPR/Cas12a toolbox for genome editing in Methanosarcina acetivorans [J]. Front Microbiol, 2023, 14: 1235616. |
| [83] | Nayak DD, Metcalf WW. Cas9-mediated genome editing in the methanogenic archaeon Methanosarcina acetivorans [J]. Proc Natl Acad Sci U S A, 2017, 114(11): 2976-2981. |
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