Biotechnology Bulletin ›› 2020, Vol. 36 ›› Issue (10): 88-98.doi: 10.13560/j.cnki.biotech.bull.1985.2020-0097
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QIAN Wen-jiang1,2(), WANG Bu-qing1,2, LI Wei-xi1,2, YANG Xue-miao2, LIU Hong-wei2(), ZHANG Li-ping1,2()
Received:
2020-02-02
Online:
2020-10-26
Published:
2020-11-02
Contact:
LIU Hong-wei,ZHANG Li-ping
E-mail:qianweijiang2020@163.com;lhwei1987@126.com;wsw4879@163.com
QIAN Wen-jiang, WANG Bu-qing, LI Wei-xi, YANG Xue-miao, LIU Hong-wei, ZHANG Li-ping. Secondary Metabolic Pathway Mining and Pan-genome Analysis of Bacillus coagulans[J]. Biotechnology Bulletin, 2020, 36(10): 88-98.
物种 | 菌株 | 组装水平 | 基因组大小/Mb | GC/% | 基因 | 蛋白 | 描述 | 登录号 |
---|---|---|---|---|---|---|---|---|
Bacillus coagulans | S-lac | CompleteGenome | 3.69484 | 46.2 | 3 559 | 3247 | 信息缺失 | CP011939.1 |
IDCC1201 | CompleteGenome | 3.66421 | 46.2 | 3 537 | 3 237 | 从韩国华城麦芽中分离 | CP035305.1 | |
LA204 | CompleteGenome | 3.64257 | 46.2 | 3 618 | 3 327 | 从武汉玉米田土壤中分离 | CP025437.1 | |
DSM2314 | CompleteGenome | 3.62865 | 46.2 | 3 515 | 3 231 | 从根际分离 | CP033687.1 | |
HM-08 | CompleteGenome | 3.62464 | 46.3 | 3 439 | 3 192 | 从鸡肠道中分离 | CP010525.1 | |
R11 | CompleteGenome | 3.60275 | 46.3 | 3 568 | 3 228 | 从中国云南泥土中分离 | CP026649.1 | |
BC-HY1 | CompleteGenome | 3.59908 | 46.2 | 3 427 | 3 181 | 从猪消化道中分离 | CP017888.1 | |
36D1 | CompleteGenome | 3.55223 | 46.5 | 3 414 | 3 140 | 信息缺失 | CP003056.1 | |
2-6 | CompleteGenome | 3.07308 | 47.3 | 3 062 | 2 778 | 信息缺失 | CP002472.1 | |
LBSC | Chromosome | 3.6359 | 46.3 | 3 627 | 3 332 | 从印度纳西克泥土中分离 | CP022701.1 | |
DSM 1 | Contig | 3.01804 | 47.2 | 3 039 | 2 779 | 信息缺失 | ALAS00000000.1 | |
DSM 1 | scaffold | 2.95252 | 47.3 | 3 124 | 2 788 | 信息缺失 | FQUB00000000.1 | |
ATCC7050 | Contig | 2.94782 | 47.3 | 3 028 | 2 754 | 信息缺失 | ATUM00000000.1 | |
ZB29 | scaffold | 3.64647 | 46.2 | 3 660 | 3 213 | 从印度孟买牛奶中分离 | QPFA00000000.1 | |
XZL9 | Contig | 3.42411 | 46.5 | 3 275 | 3 084 | 从中国济南泥土中分离 | ANAP00000000.1 | |
NL01 | Contig | 3.50142 | 46.2 | 3 426 | 3 176 | 从中国南京泥土中分离 | LBMQ00000000.1 | |
AF24-19 | scaffold | 2.9104 | 47.4 | 2 958 | 2 703 | 从人体粪便中分离 | QRUW00000000.1 | |
MGYG-HG UT-00191 | scaffold | 2.9104 | 47.4 | 2 956 | 2 701 | 从人体肠道中分离 | CABJCT000000000.1 | |
P38 | Contig | 3.37432 | 46.4 | 3 303 | 3 098 | 从中国泥土中分离 | JSVI00000000.1 | |
AF24-21 | scaffold | 2.89159 | 47.5 | 2 890 | 2 699 | 从人体粪便分离 | QRUS00000000.1 | |
Unique IS-2 | Contig | 3.44669 | 46.4 | 3 322 | 3 128 | 从被人体粪便污染的土壤中分离 | JZDH00000000.1 | |
CSIL1 | scaffold | 3.46623 | 46.3 | 3 358 | 3 121 | 信息缺失 | AXVW00000000.1 | |
HS243 | Contig | 3.4563 | 46.4 | 3 429 | 2 732 | 从印度浦那马哈拉施特拉邦商业食品中分离获取 | NFZN00000000.1 | |
GBI-30,6086 | Contig | 3.45862 | 46.4 | 3 384 | 3 133 | 从冻干粉中分离获得 | JPSK00000000.1 | |
B4100 | Scaffold | 3.42452 | 46.5 | 3 350 | 3 108 | 从意大利乳清干酪中分离 | LQYH00000000.1 | |
GED7749B | Scaffold | 3.31243 | 46.5 | 3 150 | 3 017 | 从阴道中分离获取 | LRPN00000000.1 | |
B4098 | Scaffold | 2.9287 | 47.4 | 2 952 | 2 705 | 从中国番茄罐头中分离 | LQYG00000000.1 | |
B4096 | scaffold | 3.3136 | 46.5 | 3 184 | 2 994 | 从中国番茄罐头中分离 | LQYJ00000000.1 | |
MA-13 | Contig | 2.05947 | 46.9 | 2 064 | 1 804 | 从农业废弃物中分离 | SMSP00000000.1 | |
XZL4 | scaffold | 2.86628 | 47.4 | 2 818 | 2 558 | 信息缺失 | AFWM00000000.1 | |
B4099 | scaffold | 3.27533 | 47.1 | 3 287 | 2 999 | 从印度咖喱中分离 | LQYI00000000.1 | |
H-1 | Contig | 2.86288 | 47.3 | 2 788 | 2 513 | 从上海泥土中分离 | ANAQ00000000.1 | |
ATCC 7050 | CompleteGenome | 3.367 | 46.9 | 3 405 | 3 253 | 从爱荷华州乳制品中分离 | CP009709.1 |
物种 | 菌株 | 组装水平 | 基因组大小/Mb | GC/% | 基因 | 蛋白 | 描述 | 登录号 |
---|---|---|---|---|---|---|---|---|
Bacillus coagulans | S-lac | CompleteGenome | 3.69484 | 46.2 | 3 559 | 3247 | 信息缺失 | CP011939.1 |
IDCC1201 | CompleteGenome | 3.66421 | 46.2 | 3 537 | 3 237 | 从韩国华城麦芽中分离 | CP035305.1 | |
LA204 | CompleteGenome | 3.64257 | 46.2 | 3 618 | 3 327 | 从武汉玉米田土壤中分离 | CP025437.1 | |
DSM2314 | CompleteGenome | 3.62865 | 46.2 | 3 515 | 3 231 | 从根际分离 | CP033687.1 | |
HM-08 | CompleteGenome | 3.62464 | 46.3 | 3 439 | 3 192 | 从鸡肠道中分离 | CP010525.1 | |
R11 | CompleteGenome | 3.60275 | 46.3 | 3 568 | 3 228 | 从中国云南泥土中分离 | CP026649.1 | |
BC-HY1 | CompleteGenome | 3.59908 | 46.2 | 3 427 | 3 181 | 从猪消化道中分离 | CP017888.1 | |
36D1 | CompleteGenome | 3.55223 | 46.5 | 3 414 | 3 140 | 信息缺失 | CP003056.1 | |
2-6 | CompleteGenome | 3.07308 | 47.3 | 3 062 | 2 778 | 信息缺失 | CP002472.1 | |
LBSC | Chromosome | 3.6359 | 46.3 | 3 627 | 3 332 | 从印度纳西克泥土中分离 | CP022701.1 | |
DSM 1 | Contig | 3.01804 | 47.2 | 3 039 | 2 779 | 信息缺失 | ALAS00000000.1 | |
DSM 1 | scaffold | 2.95252 | 47.3 | 3 124 | 2 788 | 信息缺失 | FQUB00000000.1 | |
ATCC7050 | Contig | 2.94782 | 47.3 | 3 028 | 2 754 | 信息缺失 | ATUM00000000.1 | |
ZB29 | scaffold | 3.64647 | 46.2 | 3 660 | 3 213 | 从印度孟买牛奶中分离 | QPFA00000000.1 | |
XZL9 | Contig | 3.42411 | 46.5 | 3 275 | 3 084 | 从中国济南泥土中分离 | ANAP00000000.1 | |
NL01 | Contig | 3.50142 | 46.2 | 3 426 | 3 176 | 从中国南京泥土中分离 | LBMQ00000000.1 | |
AF24-19 | scaffold | 2.9104 | 47.4 | 2 958 | 2 703 | 从人体粪便中分离 | QRUW00000000.1 | |
MGYG-HG UT-00191 | scaffold | 2.9104 | 47.4 | 2 956 | 2 701 | 从人体肠道中分离 | CABJCT000000000.1 | |
P38 | Contig | 3.37432 | 46.4 | 3 303 | 3 098 | 从中国泥土中分离 | JSVI00000000.1 | |
AF24-21 | scaffold | 2.89159 | 47.5 | 2 890 | 2 699 | 从人体粪便分离 | QRUS00000000.1 | |
Unique IS-2 | Contig | 3.44669 | 46.4 | 3 322 | 3 128 | 从被人体粪便污染的土壤中分离 | JZDH00000000.1 | |
CSIL1 | scaffold | 3.46623 | 46.3 | 3 358 | 3 121 | 信息缺失 | AXVW00000000.1 | |
HS243 | Contig | 3.4563 | 46.4 | 3 429 | 2 732 | 从印度浦那马哈拉施特拉邦商业食品中分离获取 | NFZN00000000.1 | |
GBI-30,6086 | Contig | 3.45862 | 46.4 | 3 384 | 3 133 | 从冻干粉中分离获得 | JPSK00000000.1 | |
B4100 | Scaffold | 3.42452 | 46.5 | 3 350 | 3 108 | 从意大利乳清干酪中分离 | LQYH00000000.1 | |
GED7749B | Scaffold | 3.31243 | 46.5 | 3 150 | 3 017 | 从阴道中分离获取 | LRPN00000000.1 | |
B4098 | Scaffold | 2.9287 | 47.4 | 2 952 | 2 705 | 从中国番茄罐头中分离 | LQYG00000000.1 | |
B4096 | scaffold | 3.3136 | 46.5 | 3 184 | 2 994 | 从中国番茄罐头中分离 | LQYJ00000000.1 | |
MA-13 | Contig | 2.05947 | 46.9 | 2 064 | 1 804 | 从农业废弃物中分离 | SMSP00000000.1 | |
XZL4 | scaffold | 2.86628 | 47.4 | 2 818 | 2 558 | 信息缺失 | AFWM00000000.1 | |
B4099 | scaffold | 3.27533 | 47.1 | 3 287 | 2 999 | 从印度咖喱中分离 | LQYI00000000.1 | |
H-1 | Contig | 2.86288 | 47.3 | 2 788 | 2 513 | 从上海泥土中分离 | ANAQ00000000.1 | |
ATCC 7050 | CompleteGenome | 3.367 | 46.9 | 3 405 | 3 253 | 从爱荷华州乳制品中分离 | CP009709.1 |
菌株 | 登录号 | 基因簇 | 类型 | 长度 | 起始点 | 终止点 |
---|---|---|---|---|---|---|
S-lac | CP011939.1 | Cluster1 | bacteriocin | 10 212 | 244 719 | 254 931 |
CP011939.1 | Cluster2 | betalactone | 28 500 | 421 549 | 450 049 | |
CP011939.1 | Cluste3 | T3PKS | 41 184 | 1 368 873 | 1 410 057 | |
IDCC1201 | CP035305.1 | Cluster4 | bacteriocin | 9 164 | 1 948 175 | 1 957 339 |
CP035305.1 | Cluster5 | betalactone | 28 500 | 2 124 507 | 2 153 007 | |
CP035305.1 | Cluster6 | bacteriocin | 10 227 | 2 645 063 | 2 655 290 | |
CP035305.1 | Cluster7 | T3PKS | 41 184 | 3 073 385 | 3 114 569 | |
LA204 | CP025437.1 | Cluster8 | LAP | 23 104 | 89 293 | 112 397 |
CP025437.1 | Cluster9 | bacteriocin | 9 627 | 2 744 552 | 2 754 179 | |
CP025437.1 | Cluster10 | bacteriocin | 9 476 | 2 817 877 | 2 827 353 | |
CP025437.1 | Cluster11 | betalactone | 27 796 | 3 021 109 | 3 048 905 | |
CP025437.1 | Cluster12 | bacteriocin | 10 227 | 3 511 998 | 3 522 225 | |
DSM 2314 | CP033687.1 | Cluster13 | bacteriocin | 9 627 | 250 405 | 260 032 |
CP033687.1 | Cluster14 | bacteriocin | 9 476 | 323 727 | 333 203 | |
CP033687.1 | Cluster15 | betalactone | 27 796 | 529 699 | 557 495 | |
CP033687.1 | Cluster16 | bacteriocin | 10 227 | 1 018 620 | 1 028 847 | |
CP033687.1 | Cluster17 | LAP | 23 104 | 1 238 486 | 1 261 590 | |
HM-08 | CP010525.1 | Cluster18 | betalactone | 28 500 | 639 210 | 667 710 |
CP010525.1 | Cluster19 | bacteriocin | 10 212 | 834 035 | 844 247 | |
R11 | CP026649.1 | Cluster20 | bacteriocin | 9 667 | 2 771 450 | 2 781 117 |
CP026649.1 | Cluster21 | betalactone | 28 570 | 2 954 738 | 2 983 308 | |
CP026649.1 | Cluster22 | bacteriocin | 10 227 | 3 478 574 | 3 488 801 | |
BC-HY1 | CP017888.1 | Cluster23 | thiopeptide | 25 017 | 362 914 | 387 931 |
CP017888.1 | Cluster24 | bacteriocin | 9 471 | 1 965 274 | 1 974 745 | |
CP017888.1 | Cluster25 | betalactone | 28 381 | 2 194 844 | 2 223 225 | |
CP017888.1 | Cluster26 | terpene | 21 865 | 2 236 543 | 2 258 408 | |
CP017888.1 | Cluster27 | bacteriocin | 10 227 | 2 706 642 | 2 716 869 | |
36D1 | CP003056.1 | Cluster28 | betalactone | 28 255 | 2 024 346 | 2 052 601 |
CP003056.1 | Cluster29 | bacteriocin | 10 338 | 2 271 308 | 2 281 646 | |
2-6 | CP002472.1 | Cluster30 | T3PKS | 41 172 | 187 665 | 228 837 |
LBSC | CP022701.1 | Cluster31 | bacteriocin | 9 775 | 138 515 | 148 290 |
CP022701.1 | Cluster32 | betalactone | 28 500 | 642 143 | 670 643 | |
CP022701.1 | Cluster33 | bacteriocin | 10 338 | 836 553 | 846 891 | |
DSM 1_1 | FQUB01000013.1 | Cluster34 | T3PKS | 26 788 | 29 638 | 56 426 |
ZB29 | QPFA01000001.1 | Cluster35 | bacteriocin | 9 352 | 1 563 368 | 1 572 720 |
QPFA01000001.1 | Cluster36 | betalactone | 28 500 | 1 742 415 | 1 770 915 | |
QPFA01000001.1 | Cluster37 | bacteriocin | 10 227 | 2 227 614 | 2 237 841 | |
AF24-19 | QRUW01000037.1 | Cluster38 | T3PKS | 25 287 | 1 | 25 288 |
P38 | JSVI01000006.1 | Cluster39 | betalactone | 28 246 | 27 219 | 55 465 |
JSVI01000047.1 | Cluster40 | bacteriocin | 10 059 | 25 667 | 35 726 | |
JSVI01000063.1 | Cluster41 | bacteriocin | 8 694 | 12 239 | 20 933 | |
AF24-21 | QRUS01000001.1 | Cluster42 | saccharide | 24 880 | 3 728 | 28 608 |
QRUS01000001.1 | Cluster43 | saccharide | 31 154 | 94 433 | 125 587 | |
QRUS01000004.1 | Cluster44 | saccharide | 24 939 | 29 550 | 54 489 | |
QRUS01000004.1 | Cluster45 | saccharide | 36 214 | 57 428 | 93 642 | |
QRUS01000006.1 | Cluster46 | saccharide | 54 277 | 3 383 | 57 660 | |
QRUS01000007.1 | Cluster47 | fatty_acid | 22 247 | 56 035 | 78 282 | |
QRUS01000008.1 | Cluster48 | saccharide | 35 116 | 60 649 | 95 765 | |
QRUS01000017.1 | Cluster49 | saccharide | 41 249 | 5 918 | 47 167 | |
QRUS01000018.1 | Cluster50 | saccharide | 21 642 | 24 679 | 46 321 | |
QRUS01000023.1 | Cluster51 | saccharide | 30 277 | 8 181 | 38 458 | |
QRUS01000024.1 | Cluster52 | saccharide | 35 431 | 4 125 | 39 556 | |
QRUS01000030.1 | Cluster53 | saccharide | 30 072 | 2 908 | 32 980 | |
QRUS01000039.1 | Cluster54 | T3PKS | 25 044 | 1 | 25 045 | |
QRUS01000042.1 | Cluster55 | fatty_acid | 16 223 | 2 469 | 18 692 | |
Unique IS-2 | JZDH01000003.1 | Cluster56 | bacteriocin | 10 227 | 3 494 | 13 721 |
JZDH01000012.1 | Cluster57 | betalactone | 27 244 | 1 | 27 245 | |
JZDH01000012.1 | Cluster58 | bacteriocin | 5 397 | 193 633 | 199 030 | |
HS243 | NFZN01000010.1 | Cluster59 | betalactone | 27 523 | 41 565 | 69 088 |
NFZN01000014.1 | Cluster60 | bacteriocin | 10 227 | 18 875 | 29 102 | |
NFZN01000026.1 | Cluster61 | bacteriocin | 5 525 | 42 873 | 48 398 | |
GBI-30,6086 | JPSK01000068.1 | Cluster62 | bacteriocin | 10 227 | 18 640 | 28 867 |
JPSK01000095.1 | Cluster63 | betalactone | 16 648 | 1 | 16 649 | |
JPSK01000097.1 | Cluster64 | bacteriocin | 5 435 | 42 803 | 48 238 | |
B4100 | LQYH01000015.1 | Cluster65 | betalactone | 27 796 | 4 691 | 32 487 |
LQYH01000022.1 | Cluster66 | bacteriocin | 10 338 | 9 516 | 19 854 | |
LQYH01000044.1 | Cluster67 | thiopeptide | 25 017 | 54 079 | 79 096 | |
GED7749B | KQ955874.1 | Cluster68 | betalactone | 15 851 | 1 | 15 852 |
KQ955875.1 | Cluster69 | bacteriocin | 10 338 | 49 800 | 60 138 | |
KQ955921.1 | Cluster70 | bacteriocin | 5 337 | 1 | 5 338 | |
KQ955931.1 | Cluster71 | thiopeptide | 7 473 | 1 | 7 474 | |
B4098 | LQYG01000055.1 | Cluster72 | T3PKS | 23 277 | 21 835 | 45 112 |
B4096 | LQYJ01000010.1 | Cluster73 | betalactone | 23 669 | 17 246 | 40 915 |
LQYJ01000039.1 | Cluster74 | LAP | 15 866 | 67 480 | 83 346 | |
LQYJ01000041.1 | Cluster75 | T3PKS | 64 83 | 1 | 64 84 | |
B4099 | LQYI01000035.1 | Cluster76 | terpene | 12 783 | 8 502 | 21 285 |
LQYI01000062.1 | Cluster77 | T3PKS | 7 228 | 1 | 7 229 | |
LQYI01000073.1 | Cluster78 | betalactone | 20 280 | 1 | 20 281 | |
ATCC 7050 | CP009709.1 | Cluster79 | T3PKS | 41 172 | 2 513 409 | 2 554 581 |
菌株 | 登录号 | 基因簇 | 类型 | 长度 | 起始点 | 终止点 |
---|---|---|---|---|---|---|
S-lac | CP011939.1 | Cluster1 | bacteriocin | 10 212 | 244 719 | 254 931 |
CP011939.1 | Cluster2 | betalactone | 28 500 | 421 549 | 450 049 | |
CP011939.1 | Cluste3 | T3PKS | 41 184 | 1 368 873 | 1 410 057 | |
IDCC1201 | CP035305.1 | Cluster4 | bacteriocin | 9 164 | 1 948 175 | 1 957 339 |
CP035305.1 | Cluster5 | betalactone | 28 500 | 2 124 507 | 2 153 007 | |
CP035305.1 | Cluster6 | bacteriocin | 10 227 | 2 645 063 | 2 655 290 | |
CP035305.1 | Cluster7 | T3PKS | 41 184 | 3 073 385 | 3 114 569 | |
LA204 | CP025437.1 | Cluster8 | LAP | 23 104 | 89 293 | 112 397 |
CP025437.1 | Cluster9 | bacteriocin | 9 627 | 2 744 552 | 2 754 179 | |
CP025437.1 | Cluster10 | bacteriocin | 9 476 | 2 817 877 | 2 827 353 | |
CP025437.1 | Cluster11 | betalactone | 27 796 | 3 021 109 | 3 048 905 | |
CP025437.1 | Cluster12 | bacteriocin | 10 227 | 3 511 998 | 3 522 225 | |
DSM 2314 | CP033687.1 | Cluster13 | bacteriocin | 9 627 | 250 405 | 260 032 |
CP033687.1 | Cluster14 | bacteriocin | 9 476 | 323 727 | 333 203 | |
CP033687.1 | Cluster15 | betalactone | 27 796 | 529 699 | 557 495 | |
CP033687.1 | Cluster16 | bacteriocin | 10 227 | 1 018 620 | 1 028 847 | |
CP033687.1 | Cluster17 | LAP | 23 104 | 1 238 486 | 1 261 590 | |
HM-08 | CP010525.1 | Cluster18 | betalactone | 28 500 | 639 210 | 667 710 |
CP010525.1 | Cluster19 | bacteriocin | 10 212 | 834 035 | 844 247 | |
R11 | CP026649.1 | Cluster20 | bacteriocin | 9 667 | 2 771 450 | 2 781 117 |
CP026649.1 | Cluster21 | betalactone | 28 570 | 2 954 738 | 2 983 308 | |
CP026649.1 | Cluster22 | bacteriocin | 10 227 | 3 478 574 | 3 488 801 | |
BC-HY1 | CP017888.1 | Cluster23 | thiopeptide | 25 017 | 362 914 | 387 931 |
CP017888.1 | Cluster24 | bacteriocin | 9 471 | 1 965 274 | 1 974 745 | |
CP017888.1 | Cluster25 | betalactone | 28 381 | 2 194 844 | 2 223 225 | |
CP017888.1 | Cluster26 | terpene | 21 865 | 2 236 543 | 2 258 408 | |
CP017888.1 | Cluster27 | bacteriocin | 10 227 | 2 706 642 | 2 716 869 | |
36D1 | CP003056.1 | Cluster28 | betalactone | 28 255 | 2 024 346 | 2 052 601 |
CP003056.1 | Cluster29 | bacteriocin | 10 338 | 2 271 308 | 2 281 646 | |
2-6 | CP002472.1 | Cluster30 | T3PKS | 41 172 | 187 665 | 228 837 |
LBSC | CP022701.1 | Cluster31 | bacteriocin | 9 775 | 138 515 | 148 290 |
CP022701.1 | Cluster32 | betalactone | 28 500 | 642 143 | 670 643 | |
CP022701.1 | Cluster33 | bacteriocin | 10 338 | 836 553 | 846 891 | |
DSM 1_1 | FQUB01000013.1 | Cluster34 | T3PKS | 26 788 | 29 638 | 56 426 |
ZB29 | QPFA01000001.1 | Cluster35 | bacteriocin | 9 352 | 1 563 368 | 1 572 720 |
QPFA01000001.1 | Cluster36 | betalactone | 28 500 | 1 742 415 | 1 770 915 | |
QPFA01000001.1 | Cluster37 | bacteriocin | 10 227 | 2 227 614 | 2 237 841 | |
AF24-19 | QRUW01000037.1 | Cluster38 | T3PKS | 25 287 | 1 | 25 288 |
P38 | JSVI01000006.1 | Cluster39 | betalactone | 28 246 | 27 219 | 55 465 |
JSVI01000047.1 | Cluster40 | bacteriocin | 10 059 | 25 667 | 35 726 | |
JSVI01000063.1 | Cluster41 | bacteriocin | 8 694 | 12 239 | 20 933 | |
AF24-21 | QRUS01000001.1 | Cluster42 | saccharide | 24 880 | 3 728 | 28 608 |
QRUS01000001.1 | Cluster43 | saccharide | 31 154 | 94 433 | 125 587 | |
QRUS01000004.1 | Cluster44 | saccharide | 24 939 | 29 550 | 54 489 | |
QRUS01000004.1 | Cluster45 | saccharide | 36 214 | 57 428 | 93 642 | |
QRUS01000006.1 | Cluster46 | saccharide | 54 277 | 3 383 | 57 660 | |
QRUS01000007.1 | Cluster47 | fatty_acid | 22 247 | 56 035 | 78 282 | |
QRUS01000008.1 | Cluster48 | saccharide | 35 116 | 60 649 | 95 765 | |
QRUS01000017.1 | Cluster49 | saccharide | 41 249 | 5 918 | 47 167 | |
QRUS01000018.1 | Cluster50 | saccharide | 21 642 | 24 679 | 46 321 | |
QRUS01000023.1 | Cluster51 | saccharide | 30 277 | 8 181 | 38 458 | |
QRUS01000024.1 | Cluster52 | saccharide | 35 431 | 4 125 | 39 556 | |
QRUS01000030.1 | Cluster53 | saccharide | 30 072 | 2 908 | 32 980 | |
QRUS01000039.1 | Cluster54 | T3PKS | 25 044 | 1 | 25 045 | |
QRUS01000042.1 | Cluster55 | fatty_acid | 16 223 | 2 469 | 18 692 | |
Unique IS-2 | JZDH01000003.1 | Cluster56 | bacteriocin | 10 227 | 3 494 | 13 721 |
JZDH01000012.1 | Cluster57 | betalactone | 27 244 | 1 | 27 245 | |
JZDH01000012.1 | Cluster58 | bacteriocin | 5 397 | 193 633 | 199 030 | |
HS243 | NFZN01000010.1 | Cluster59 | betalactone | 27 523 | 41 565 | 69 088 |
NFZN01000014.1 | Cluster60 | bacteriocin | 10 227 | 18 875 | 29 102 | |
NFZN01000026.1 | Cluster61 | bacteriocin | 5 525 | 42 873 | 48 398 | |
GBI-30,6086 | JPSK01000068.1 | Cluster62 | bacteriocin | 10 227 | 18 640 | 28 867 |
JPSK01000095.1 | Cluster63 | betalactone | 16 648 | 1 | 16 649 | |
JPSK01000097.1 | Cluster64 | bacteriocin | 5 435 | 42 803 | 48 238 | |
B4100 | LQYH01000015.1 | Cluster65 | betalactone | 27 796 | 4 691 | 32 487 |
LQYH01000022.1 | Cluster66 | bacteriocin | 10 338 | 9 516 | 19 854 | |
LQYH01000044.1 | Cluster67 | thiopeptide | 25 017 | 54 079 | 79 096 | |
GED7749B | KQ955874.1 | Cluster68 | betalactone | 15 851 | 1 | 15 852 |
KQ955875.1 | Cluster69 | bacteriocin | 10 338 | 49 800 | 60 138 | |
KQ955921.1 | Cluster70 | bacteriocin | 5 337 | 1 | 5 338 | |
KQ955931.1 | Cluster71 | thiopeptide | 7 473 | 1 | 7 474 | |
B4098 | LQYG01000055.1 | Cluster72 | T3PKS | 23 277 | 21 835 | 45 112 |
B4096 | LQYJ01000010.1 | Cluster73 | betalactone | 23 669 | 17 246 | 40 915 |
LQYJ01000039.1 | Cluster74 | LAP | 15 866 | 67 480 | 83 346 | |
LQYJ01000041.1 | Cluster75 | T3PKS | 64 83 | 1 | 64 84 | |
B4099 | LQYI01000035.1 | Cluster76 | terpene | 12 783 | 8 502 | 21 285 |
LQYI01000062.1 | Cluster77 | T3PKS | 7 228 | 1 | 7 229 | |
LQYI01000073.1 | Cluster78 | betalactone | 20 280 | 1 | 20 281 | |
ATCC 7050 | CP009709.1 | Cluster79 | T3PKS | 41 172 | 2 513 409 | 2 554 581 |
基因簇 | 最相似已知基因簇 | 相似度 | MIBiG 数据库登录号 | 基因簇 | 最相似已知基因簇 | 相似度 | MIBiG 数据库登录号 | |
---|---|---|---|---|---|---|---|---|
Cluster2 | Fengycin | 40% | CP011939.1 | Cluster38 | rhizocticin A | 6% | QRUW01000037.1 | |
Cluster4 | Amylocyclicin | 66% | CP035305.1 | Cluster39 | Fengycin | 40% | JSVI01000006.1 | |
Cluster5 | Fengycin | 40% | CP035305.1 | Cluster41 | Amylocyclicin | 66% | JSVI01000063.1 | |
Cluster8 | Listeriolysin S | 37% | CP025437.1 | Cluster42 | tauramamide | 13% | QRUS01000001.1 | |
Cluster10 | Amylocyclicin | 66% | CP025437.1 | Cluster43 | dipeptide aldehydes | 11% | QRUS01000001.1 | |
Cluster11 | Fengycin | 40% | CP025437.1 | Cluster46 | molybdenum cofactor | 17% | QRUS01000006.1 | |
Cluster14 | Amylocyclicin | 66% | CP033687.1 | Cluster47 | chejuenolide A/ | 7% | QRUS01000007.1 | |
Cluster15 | Fengycin | 40% | CP033687.1 | chejuenolide B | ||||
Cluster17 | Listeriolysin S | 37% | CP033687.1 | Cluster51 | exopolysaccharide | 10% | QRUS01000023.1 | |
Cluster18 | Fengycin | 40% | CP010525.1 | Cluster54 | rhizocticin A | 6% | QRUS01000039.1 | |
Cluster19 | Amylocyclicin | 66% | CP010525.1 | Cluster57 | Fengycin | 40% | JZDH01000012.1 | |
Cluster20 | Amylocyclicin | 66% | CP026649.1 | Cluster59 | Fengycin | 40% | NFZN01000010.1 | |
Cluster21 | Fengycin | 40% | CP026649.1 | Cluster63 | Fengycin | 40% | JPSK01000095.1 | |
Cluster24 | Amylocyclicin | 66% | CP017888.1 | Cluster65 | Fengycin | 40% | LQYH01000015.1 | |
Cluster25 | Fengycin | 40% | CP017888.1 | Cluster66 | Amylocyclicin | 50% | LQYH01000022.1 | |
Cluster26 | Kanamycin | 1% | CP017888.1 | Cluster68 | Fengycin | 40% | KQ955874.1 | |
Cluster28 | Fengycin | 40% | CP003056.1 | Cluster69 | Amylocyclicin | 66% | KQ955875.1 | |
Cluster29 | Amylocyclicin | 66% | CP003056.1 | Cluster73 | Fengycin | 40% | LQYJ01000010.1 | |
Cluster32 | Fengycin | 40% | CP022701.1 | Cluster74 | Listeriolysin S | 37% | LQYJ01000039.1 | |
Cluster33 | Amylocyclicin | 66% | CP022701.1 | Cluster76 | Kanamycin | 1% | LQYI01000035.1 | |
Cluster35 | Amylocyclicin | 66% | QPFA01000001.1 | Cluster78 | Fengycin | 40% | LQYI01000073.1 | |
Cluster36 | Fengycin | 40% | QPFA01000001.1 | Cluster79 | rhizocticin A | 6% | CP009709.1 |
基因簇 | 最相似已知基因簇 | 相似度 | MIBiG 数据库登录号 | 基因簇 | 最相似已知基因簇 | 相似度 | MIBiG 数据库登录号 | |
---|---|---|---|---|---|---|---|---|
Cluster2 | Fengycin | 40% | CP011939.1 | Cluster38 | rhizocticin A | 6% | QRUW01000037.1 | |
Cluster4 | Amylocyclicin | 66% | CP035305.1 | Cluster39 | Fengycin | 40% | JSVI01000006.1 | |
Cluster5 | Fengycin | 40% | CP035305.1 | Cluster41 | Amylocyclicin | 66% | JSVI01000063.1 | |
Cluster8 | Listeriolysin S | 37% | CP025437.1 | Cluster42 | tauramamide | 13% | QRUS01000001.1 | |
Cluster10 | Amylocyclicin | 66% | CP025437.1 | Cluster43 | dipeptide aldehydes | 11% | QRUS01000001.1 | |
Cluster11 | Fengycin | 40% | CP025437.1 | Cluster46 | molybdenum cofactor | 17% | QRUS01000006.1 | |
Cluster14 | Amylocyclicin | 66% | CP033687.1 | Cluster47 | chejuenolide A/ | 7% | QRUS01000007.1 | |
Cluster15 | Fengycin | 40% | CP033687.1 | chejuenolide B | ||||
Cluster17 | Listeriolysin S | 37% | CP033687.1 | Cluster51 | exopolysaccharide | 10% | QRUS01000023.1 | |
Cluster18 | Fengycin | 40% | CP010525.1 | Cluster54 | rhizocticin A | 6% | QRUS01000039.1 | |
Cluster19 | Amylocyclicin | 66% | CP010525.1 | Cluster57 | Fengycin | 40% | JZDH01000012.1 | |
Cluster20 | Amylocyclicin | 66% | CP026649.1 | Cluster59 | Fengycin | 40% | NFZN01000010.1 | |
Cluster21 | Fengycin | 40% | CP026649.1 | Cluster63 | Fengycin | 40% | JPSK01000095.1 | |
Cluster24 | Amylocyclicin | 66% | CP017888.1 | Cluster65 | Fengycin | 40% | LQYH01000015.1 | |
Cluster25 | Fengycin | 40% | CP017888.1 | Cluster66 | Amylocyclicin | 50% | LQYH01000022.1 | |
Cluster26 | Kanamycin | 1% | CP017888.1 | Cluster68 | Fengycin | 40% | KQ955874.1 | |
Cluster28 | Fengycin | 40% | CP003056.1 | Cluster69 | Amylocyclicin | 66% | KQ955875.1 | |
Cluster29 | Amylocyclicin | 66% | CP003056.1 | Cluster73 | Fengycin | 40% | LQYJ01000010.1 | |
Cluster32 | Fengycin | 40% | CP022701.1 | Cluster74 | Listeriolysin S | 37% | LQYJ01000039.1 | |
Cluster33 | Amylocyclicin | 66% | CP022701.1 | Cluster76 | Kanamycin | 1% | LQYI01000035.1 | |
Cluster35 | Amylocyclicin | 66% | QPFA01000001.1 | Cluster78 | Fengycin | 40% | LQYI01000073.1 | |
Cluster36 | Fengycin | 40% | QPFA01000001.1 | Cluster79 | rhizocticin A | 6% | CP009709.1 |
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