Research on Gene Promoter of Fish

Abstract

Abstract: Promoter is an important component of gene and controls the transcription and expression of gene. It is widely recognized that the investigation of promoter could be used in changing and improving the characteristics and performances of organisms. In recent years, the research in fish promoter was extensive and made us a better understanding about promoter. In this paper, we summarized the characteristics of fish promoter and also the application in metabolism, growth development, immune of fish and the application of dual promoter in transgenic fish.

Key words: Fish Gene, Promoter, Transcription factor binding sites, Transcriptional factor

Du Xiaoxi, Gao Xianggang, Chen Panhai, Wang Yang, He Chongbo. Research on Gene Promoter of Fish[J]. Biotechnology Bulletin, 2013, 0(8): 12-16.

References

[1] Zhang MQ. Identification of human gene core promoters in silico[J]. Genome Res, 1998（3）8：319-326.
[2] Smale ST, Kadonaga JT. The RNA polymerase II core promoter[J]. Annu Rev Biochem, 2003, 72：449-479.
[3] Wasylyk B. Transcription elements and factors of RNA polymerase B promoters of higher eukaryotes[J]. CRC Crit Rev Biochem, 1988, 23（2）：77-120.
[4] Wagner A. A computational genomics approach to the identification of gene networks[J]. Nucleic Acids Res, 1997, 25（18）：3594-3604.
[5] Fickett JW, Wasserman WW. Discovery and modeling of transcrip-tional regulatory regions[J]. Current Opinion in Biotechnology, 2000, 11（1）：19-24.
[6] Pedersen AG, Baldi P, Chauvin Y, et al. The biology of eukaryotic Promoter prediction—a review[J]. Comput Chem, 1999, 23（3-4）：191-207.
[7] 蹇锐, 程小星, 钟敏, 等.人MIF 基因启动子多态性与结核病易感性的关系[J].微生物学杂志, 2006, 26（5）：1-3.
[8] Ge J, Dong Z, Li J, et al. Isolation of yellow catfish β-actin promoter and generation of transgenic yellow catfish expressing enhanced yellow fluorescent protein[J]. Transgenic Res, 2012, 21（5）：995-1004.
[9] 谢在春, 潘秋辉, 于永春, 等.真核蛋白编码基因核心启动子元件[J].医学分子生物学杂志, 2007, 4（2）：132-135.
[10] Fassler JS, Gussin GN. Promoters and basal transcription machinery in eubacteria and eukaryotes：concepts, definitions, and analog-ies[J]. Methods Enzymol, 1996, 273：3-29.
[11] Juven-Gershon T, Kadonaga JT. Regulation of gene expression via the core promoter and the basal transcriptional machinery[J]. Dev Biol, 2010, 339（2）：225-229.
[12] Wang G, Li J, Zou P, et al. Expression pattern, promoter activity and bactericidal property of β-defensin from the mandarin fish Siniperca chuatsi[J]. Fish Shellfish Immunol, 2012, 33（3）：522-531.
[13] Nadjar-Boger E, Hinits Y, Funkenstein B. Structural and functional analysis of myostatin-2 promoter alleles from the marine fish Sparus aurata：evidence for strong muscle-specific promoter activity and post-transcriptional regulation[J]. Mol Cell Endocrinol, 2012, 361（1-2）：51-68.
[14] Goodrich JA, Tjian R. Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation[J]. Nat Rev Genet, 2010, 11（8）：549-558.
[15] Sreenivasulu G, Senthilkumaran B, Sudhakumari CC, et al. 20β-hydroxysteroid dehydrogenase gene promoter：potential role for cyclic AMP and xenobiotic responsive elements[J]. Gene, 2012, 509（1）：68-76.
[16] Ma XT, Qian MP, Tang HX. Predicting polymerase II core promoters by cooperating transcription factor binding sites in eukaryotic genes[J]. Acta Biochim Biophys Sin（Shanghai）, 2004, 36（4）：250-258.
[17] Langley B, Thomas M, Bishop A, et al. Myostatin inhibits myoblast differentiation by down-regulating MyoD expression[J]. J Biol Chem, 2002, 277（51）：49831-49840.
[18] Ríos R, Fernández-Nocelos S, Carneiro I, et al. Differential response to exogenous and endogenous myostatin in myoblasts suggests that myostatin acts as an autocrine factor in vivo[J]. Endocrinology, 2004, 145（6）：2795-2803.
[19] Syed M, Vestrheim O, Mikkelsen B, Lundin M. Isolation of the promoters of Atlantic salmon MHCII genes[J]. Mar Biotechnol（NY）, 2003, 5（3）：253-260.
[20] Leaver MJ, Bautista JM, Bjornsson BT, et al. Towards fish lipid nutrigenomics：current state and prospects for fin-fish aquaculture[J]. Reviews in Fisheries Science, 2008, 16：73-94.
[21] Geay F, Zambonino-Infante J, Reinhardt R, et al. Characteristics of fads2 gene expression and putative promoter in European sea bass(Dicentrarchus labrax)：comparison with salmonid species and analysis of CpG methylation[J]. Mar Genomics, 2012, 5：7-13.
[22] Liu J, Sun YH, Wang N, et al. Cloning, characterization and promoter analysis of common carp hairy/Enhancer-of-split-related gene, her6[J]. J Genet, 2006, 85（3）：171-178.
[23] Li H, Fan J, Liu S, et al. Characterization of a myostatin gene（MSTN1）from spotted halibut(Verasper variegatus)and association between its promoter polymorphism and individual growth performance[J]. Comp Biochem Physiol B Biochem Mol Biol, 2012, 161（4）：315-322.
[24] Lau MT, Lin SW, Ge W. Identification of Smad response elements in the promoter of Goldfish FSHβ gene and evidence for their mediation of activin and GnRH stimulation of FSHβ expression[J]. Front Endocrinol（Lausanne）, 2012, 3：47.
[25] 王海英, 叶星, 劳海华, 等.唐鱼β-actin基因近端和远端启动子的鉴定及其启动活性分析[J].生物工程学报, 2008, 24（10）：1768-1775 .
[26] Chen LC, Wu JL, Shiau CY, et al. Organization and promoter analysis of the zebrafish(Danio rerio)chemokine gene（CXC-64）promoter[J]. Fish Physiol Biochem, 2010, 36（3）：511-521.
[27] Zou J, Clark MS, Secombes CJ. Characterisation, expression and promoter analysis of an interleukin 10 homologue in the puffer fish, Fugu rubripes[J]. Immunogenetics, 2003, 55（5）：325-335.
[28] Martinez-Lopez A, Chinchilla B, Encinas P, et al. Replacement of the human cytomegalovirus promoter with fish enhancer and core elements to control the expression of the G gene of viral haemorrhagic septicemia virus（VHSV）[J]. J Biotechnol, 2012, 164（2）：171-178.
[29] 刘石娟, 郑成超.真核生物双向启动子的结构与功能[J].中国生物化学与分子生物学报, 2011, 27（10）：894-900.
[30] Shimizu A, Shimizu N. Dual promoter expression system with insulator ensures a stringent tissue-specific regulation of two reporter genes in the transgenic fish[J]. Transgenic Res, 2013, 22：435-444.