Biotechnology Bulletin ›› 2024, Vol. 40 ›› Issue (2): 172-182.doi: 10.13560/j.cnki.biotech.bull.1985.2023-0812
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LU Yu-dan1,2,3(), LIU Xiao-chi1,2,3, FENG Xin2,3(), CHEN Gui-xin1, CHEN Yi-ting2,3()
Received:
2023-08-20
Online:
2024-02-26
Published:
2024-03-13
Contact:
FENG Xin, CHEN Yi-ting
E-mail:1303922912@qq.com;fengxin1506@163.com;chyiting@163.com
LU Yu-dan, LIU Xiao-chi, FENG Xin, CHEN Gui-xin, CHEN Yi-ting. Identification of the Kiwifruit BBX Gene Family and Analysis of Their Transcriptional Characteristics[J]. Biotechnology Bulletin, 2024, 40(2): 172-182.
Fig. 1 Phylogenetic analysis of the BBX genes between kiwifruit and Arabidopsis I-V: Five groups of AcBBX. Kiwifruit AcBBXs are in red, Arabidopsis AtBBXs are in black
Fig. 4 Intraspecific collinearity of AcBBX genes and their chromosome density and locations ①: Gene chromosome locations. ②: Gene chromosome density heatmap. ③: Gene chromosome density line map. ④: Intra-species collinearity map
Fig. 6 Expression patterns of the AcBBX genes under different storage treatments CK: Mature fruits(160 d post flowering); RT_1W: mature fruits stored at 25℃ for 1 week; ABA_1W: mature fruits soaked with 50 mg/L ABA for 2 min and then stored at 25℃ for 1 weeks; Four_1W: mature fruits stored at 4℃ for 1 week; Four_2W: mature fruits stored at 4℃ for 2 weeks; Four_3W: mature fruits stored at 4℃ for 3 weeks
[1] |
Kumagai T, Ito S, Nakamichi N, et al. The common function of a novel subfamily of B-Box zinc finger proteins with reference to circadian-associated events in Arabidopsis thaliana[J]. Biosci Biotechnol Biochem, 2008, 72(6): 1539-1549.
doi: 10.1271/bbb.80041 URL |
[2] |
Khanna R, Kronmiller B, Maszle DR, et al. The Arabidopsis B-box zinc finger family[J]. Plant Cell, 2009, 21(11): 3416-3420.
doi: 10.1105/tpc.109.069088 URL |
[3] | 戴亚青. 苹果B-boxl(MdBBXl)蛋白响应非生物胁迫的研究[D]. 泰安: 山东农业大学, 2019. |
Dai YQ. Investigation on B-box protein 1(MdBBX1)from apple in response to abiotic stress[D]. Tai'an: Shandong Agricultural University, 2019. | |
[4] | 叶洋. PtBBX8和PtBBX38在开花调控和干旱胁迫响应中的功能研究[D]. 杨凌: 西北农林科技大学, 2022. |
Ye Y. Functional studies of PtBBX8 and PtBBX38 in flowering regulation and drought stress response[D]. Yangling: Northwest A & F University, 2022. | |
[5] | 刘庆家. 狗尾草在远红光和低温胁迫下的转录组动态变化[D]. 泰安: 山东农业大学, 2021. |
Liu QJ. Dynamic changes of transcriptome in Setaria viridis under far red light and low temperature stress[D]. Tai'an: Shandong Agricultural University, 2021. | |
[6] |
王园, 王晶, 李淑霞. 紫花苜蓿MsBBX24基因的克隆及耐盐性分析[J]. 草业学报, 2023, 32(3): 107-117.
doi: 10.11686/cyxb2022104 |
Wang Y, Wang J, Li SX. Cloning of MsBBX24 from alfalfa(Medic-ago sativa)and determination of its role in salt tolerance[J]. Acta Prataculturae Sin, 2023, 32(3): 107-117. | |
[7] | 符真珠, 蒋卉, 王锐, 等. 矮牵牛BBX基因家族成员鉴定及对不同光质的表达响应[J]. 植物生理学报, 2021, 57(1): 50-58. |
Fu ZZ, Jiang H, Wang R, et al. BBX gene family members in Petunia: comparative genome analysis and expression pattern under different light quality conditions[J]. Plant Physiol J, 2021, 57(1): 50-58. | |
[8] | 叶云天. 草莓BBX家族鉴定及FaBBX28cl调控草莓开花时间的分子机制研究[D]. 雅安: 四川农业大学, 2022. |
Ye YT. Identification of the BBX family in strawberry and the molecular mechanism of FaBBX28c1 in regulating flowering time of strawberry[D]. Ya'an: Sichuan Agricultural University, 2022. | |
[9] | 朱珍珍. 光诱导基因MdBBX21促进苹果果皮花青苷合成机制研究[D]. 杨凌: 西北农林科技大学, 2020. |
Zhu ZZ. The research of light-induced MdBBX21 promoteing anthocyanin synthesis in apple peel[D]. Yangling: Northwest A & F University, 2020. | |
[10] |
Ma J, Dai JX, Liu XW, et al. Genome-wide and expression analysis of B-box gene family in pepper[J]. BMC Genomics, 2021, 22(1): 883.
doi: 10.1186/s12864-021-08186-w pmid: 34872495 |
[11] |
Xu D, Wang HK, Feng XT, et al. Genome-wide identification, phylogenetic and expression analysis of the B-box gene family in the woodland strawberry(Fragaria vesca)[J]. Horticulturae, 2023, 9(7): 842.
doi: 10.3390/horticulturae9070842 URL |
[12] | 张翼. 月季BBX28基因调节H2O2昼夜动态影响花瓣衰老的分子机制[D]. 北京: 中国农业大学, 2018. |
Zhang Y. RhBBX28 regulates petal senescence by controlling H2O2 homeostasis in rose(Rosa hybrida)[D]. Beijing: China Agricultural University, 2018. | |
[13] |
Wei HR, Wang PP, Chen JQ, et al. Genome-wide identification and analysis of B-BOX gene family in grapevine reveal its potential functions in berry development[J]. BMC Plant Biol, 2020, 20(1): 72.
doi: 10.1186/s12870-020-2239-3 pmid: 32054455 |
[14] | 路喻丹, 刘晓驰, 冯新, 等. 猕猴桃的营养成分、生物活性及其综合利用研究进展[J]. 东南园艺, 2022, 10(2): 137-144. |
Lu YD, Liu XC, Feng X, et al. Progress in nutritional composition, bioactivity and its comprehensive utilization of kiwi fruit[J]. Southeast Hortic, 2022, 10(2): 137-144. | |
[15] | 方宝华, 王伟平, 赵杨, 等. 水稻BBX基因家族生物信息学及表达模式分析[J]. 分子植物育种, 2020, 18(20): 6586-6594. |
Fang BH, Wang WP, Zhao Y, et al. Bioinformatics and expression pattern analysis of BBX gene family in rice[J]. Mol Plant Breed, 2020, 18(20): 6586-6594. | |
[16] |
马文婧, 刘震, 李志涛, 等. 马铃薯BBX基因家族的全基因组鉴定及表达分析[J]. 作物学报, 2022, 48(11): 2797-2812.
doi: 10.3724/SP.J.1006.2022.14199 |
Ma WJ, Liu Z, Li ZT, et al. Genome-wide identification and expression analysis of BBX gene family in potato(Solanum tuberosum L.)[J]. Acta Agron Sin, 2022, 48(11): 2797-2812. | |
[17] |
王艳朋, 凌磊, 张文睿, 等. 小麦B-box基因家族全基因组鉴定与表达分析[J]. 作物学报, 2021, 47(8): 1437-1449.
doi: 10.3724/SP.J.1006.2021.01077 |
Wang YP, Ling L, Zhang WR, et al. Genome-wide identification and expression analysis of B-box gene family in wheat[J]. Acta Agron Sin, 2021, 47(8): 1437-1449. | |
[18] | 赵长江, 徐尚缘, 都梦翔, 等. 玉米BBX基因家族鉴定及表达分析[J]. 西北农业学报, 2022, 31(6): 677-689. |
Zhao CJ, Xu SY, Du MX, et al. Identification and expression analysis of BBX gene family in maize[J]. Acta Agric Boreali Occidentalis Sin, 2022, 31(6): 677-689. | |
[19] | 张梓浩, 唐佳美, 张春渝, 等. 香蕉MaBBX基因家族的鉴定、进化及表达[J]. 应用与环境生物学报, 2022, 28(3): 606-613. |
Zhang ZH, Tang JM, Zhang CY, et al. Genome-wide identification, evolution, and expression analysis of MaBBX gene family in banana[J]. Chin J Appl Environ Biol, 2022, 28(3): 606-613. | |
[20] |
葛孟清, 刘众杰, 朱旭东, 等. 葡萄BBX基因家族的鉴定与表达分析[J]. 核农学报, 2021, 35(1): 18-30.
doi: 10.11869/j.issn.100-8551.2021.01.0018 |
Ge MQ, Liu ZJ, Zhu XD, et al. Bioinformatics identification and analysis of BBX gene family in grape[J]. J Nucl Agric Sci, 2021, 35(1): 18-30.
doi: 10.11869/j.issn.100-8551.2021.01.0018 |
|
[21] | 储转南. 番茄锌指蛋白家族基因分析与功能研究[D]. 武汉: 华中农业大学, 2016. |
Chu ZN. The study of zinc finger gene family and gene function analysis[D]. Wuhan: Huazhong Agricultural University, 2016. | |
[22] |
牛娜, 刘震, 黄鹏翔, 等. 马铃薯GAUT基因家族的全基因组鉴定及表达分析[J]. 作物学报, 2021, 47(12): 2348-2361.
doi: 10.3724/SP.J.1006.2021.04268 |
Niu N, Liu Z, Huang PX, et al. Genome-wide identification and expression analysis of potato GAUT gene family[J]. Acta Agron Sin, 2021, 47(12): 2348-2361.
doi: 10.3724/SP.J.1006.2021.04268 |
|
[23] |
赖瑞联, 冯新, 高敏霞, 等. 猕猴桃过氧化氢酶基因家族全基因组鉴定与表达分析[J]. 生物技术通报, 2023, 39(4): 136-147.
doi: 10.13560/j.cnki.biotech.bull.1985.2022-0533 |
Lai RL, Feng X, Gao MX, et al. Genome-wide identification of catalase family genes and expression analysis in kiwifruit[J]. Biotechnol Bull, 2023, 39(4): 136-147. | |
[24] | Schilling S, Kennedy A, Pan SR, et al. Genome-wide analysis of MIKC-type MADS-box genes in wheat: pervasive duplications may have facilitated adaptation to different environmental conditions[J]. bioRxiv, 2019. DOI: 10.1101/585232. |
[25] |
Song ZQ, Bian YT, Liu JJ, et al. B-box proteins: pivotal players in light-mediated development in plants[J]. J Integr Plant Biol, 2020, 62(9): 1293-1309.
doi: 10.1111/jipb.12935 |
[26] | 房鸿成. B-box转录因子介导UV-B和温度调控苹果果实着色的机理[D]. 泰安: 山东农业大学, 2019. |
Fang HC. Mechanisms of B-box transcription factor mediated UV-B and temperature regulation on apple fruit coloring[D]. Tai'an: Shandong Agricultural University, 2019. | |
[27] | 刘亚男, 谢小燕, 吴杨, 等. 油茶CoBBX22基因负调控转基因拟南芥耐旱性[J]. 植物生理学报, 2023, 59(2): 383-392. |
Liu YN, Xie XY, Wu Y, et al. CoBBX22 from Camellia oleifera negatively regulates drought stress tolerance in transgenic Arabidopsis thaliana[J]. Plant Physiol J, 2023, 59(2): 383-392. | |
[28] | 于文杰. PpBBX24-like和PpWRKY22L调控红梨花青苷合成的分子机制[D]. 杭州: 浙江大学, 2021. |
Yu WJ. Molecular mechanism of PpBBX24-like and PpWRKY22L transcription factors regulating anthocyanin biosynthesis in red pear[D]. Hangzhou: Zhejiang University, 2021. | |
[29] |
Wu HF, Wang X, Cao YZ, et al. CpBBX19, a B-box transcription factor gene of Chimonanthus praecox, improves salt and drought tolerance in Arabidopsis[J]. Genes, 2021, 12(9): 1456.
doi: 10.3390/genes12091456 URL |
[30] |
Cao YP, Meng DD, Han YH, et al. Comparative analysis of B-BOX genes and their expression pattern analysis under various treatments in Dendrobium officinale[J]. BMC Plant Biol, 2019, 19(1): 245.
doi: 10.1186/s12870-019-1851-6 |
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