生物技术通报 ›› 2022, Vol. 38 ›› Issue (7): 109-118.doi: 10.13560/j.cnki.biotech.bull.1985.2021-0779
刘警鞠1(), 张雨森1, 陈娟2, 孙炳达3, 赵国柱1()
收稿日期:
2021-06-18
出版日期:
2022-07-26
发布日期:
2022-08-09
作者简介:
刘警鞠,女,硕士研究生,研究方向:真菌分类学;E-mail: 基金资助:
LIU Jing-ju1(), ZHANG Yu-sen1, CHEN Juan2, SUN Bing-da3, ZHAO Guo-zhu1()
Received:
2021-06-18
Published:
2022-07-26
Online:
2022-08-09
摘要:
曲霉属真菌的利用及发现命名历史悠久,分类体系不断变化,2011年7月通过的《国际藻类、菌物、植物命名法规》(墨尔本法规),规定了“一种真菌一个名称”条款在2013年1月1日生效,改变了原先真菌物种可以多名称,有性型优先代表全型的规则,对曲霉分类命名影响巨大。目前,国际上对曲霉属及相关的属种进行了大规模系统分类修订,更注重分子系统发育结果,推荐的曲霉标准现代多相分类方法主要包括:一、分子生物学测定通用DNA分子条形码ITS序列及特定的第二条形码基因(钙调蛋白,β-微管蛋白及RNA聚合酶II第二大亚基等);二、形态学特征(基物、标准培养基、培养条件、菌落、分生孢子头、子囊孢子等);三、代谢物谱(extrolite)分析(毒素、酶、有机酸、抗生素及其他次级代谢产物等)。新分类系统形成的曲霉属现代分类保留Aspergillus 为代表曲霉属唯一合法的名称,灰绿曲霉Aspergillus glaucus为模式种,属下包含6个亚属,27个组,75个系/族,446个接受种,原有性型属种(名称)据系统发育关系被废除、组合或独立。本文总结了曲霉分类历史,重点阐述墨尔本法规影响下曲霉属的修订变化、现代的分类系统、全基因组分析技术在曲霉研究中的应用,及我国曲霉属的研究现状及建议等,旨在为规范曲霉的分类、命名、合法名称的使用及曲霉真菌和基因资源挖掘等提供参考。
刘警鞠, 张雨森, 陈娟, 孙炳达, 赵国柱. 曲霉属的现代分类命名研究进展[J]. 生物技术通报, 2022, 38(7): 109-118.
LIU Jing-ju, ZHANG Yu-sen, CHEN Juan, SUN Bing-da, ZHAO Guo-zhu. Research Progress in Modern Taxonomy and Nomenclature of Aspergillus[J]. Biotechnology Bulletin, 2022, 38(7): 109-118.
原有性型及相关属Sexual and related genera | 处理方式Treatment | 处理后结果Current status |
---|---|---|
毛萨托菌属Chaetosartorya | 有性型异名Sexual synonym | =淡黄亚属Subgenus Cremei |
脊孢菌属Cristaspora | 有性型异名Sexual synonym | =淡黄亚属Subgenus Cremei |
分叉菌属Dichotomomyces | 有性型异名Sexual synonym | =棒状组Section Clavati |
裸胞壳属Emericella | 有性型异名Sexual synonym | =古铜组Section Aenei =巢状组Section Nidulantes =焦色组Section Usti |
散囊菌属Eurotium | 有性型异名Sexual synonym | =曲霉亚属Subgenus Aspergillus |
芬尼菌属Fennellia | 有性型异名Sexual synonym | =黄梗组Section Flavipedes |
半内果属Hemicarpenteles | 转至Transferred to | 青霉属Penicillium |
新内果属Neocarpenteles | 有性型异名Sexual synonym | =棒状组Section Clavati |
新石座菌属Neopetromyces | 有性型异名Sexual synonym | =环绕组Section Circumdati |
新萨托菌属Neosartorya | 有性型异名Sexual synonym | =烟色组Section Fumigati |
石座菌属Petromyces | 有性型异名Sexual synonym | =黄色组Section Flavi |
单瓶霉属Phialosimplex | 无性型异名Asexual synonym | =多拟青霉亚属Subgenus Polypaecilum |
多拟青霉属Polypaecilum | 无性型异名Asexual synonym | =Subgenus Polypaecilum |
核闭壳属Sclerocleista | 从曲霉属移除Excluded from Aspergillus | 独立Independent |
束梗丛霉属Stilbothamnium | 有性型异名Sexual synonym | 废弃异名Discarded synonym |
表1 曲霉原主要的有性型及相关属的处理
Table 1 Treatment of major teleomorph and related genera of Aspergillus
原有性型及相关属Sexual and related genera | 处理方式Treatment | 处理后结果Current status |
---|---|---|
毛萨托菌属Chaetosartorya | 有性型异名Sexual synonym | =淡黄亚属Subgenus Cremei |
脊孢菌属Cristaspora | 有性型异名Sexual synonym | =淡黄亚属Subgenus Cremei |
分叉菌属Dichotomomyces | 有性型异名Sexual synonym | =棒状组Section Clavati |
裸胞壳属Emericella | 有性型异名Sexual synonym | =古铜组Section Aenei =巢状组Section Nidulantes =焦色组Section Usti |
散囊菌属Eurotium | 有性型异名Sexual synonym | =曲霉亚属Subgenus Aspergillus |
芬尼菌属Fennellia | 有性型异名Sexual synonym | =黄梗组Section Flavipedes |
半内果属Hemicarpenteles | 转至Transferred to | 青霉属Penicillium |
新内果属Neocarpenteles | 有性型异名Sexual synonym | =棒状组Section Clavati |
新石座菌属Neopetromyces | 有性型异名Sexual synonym | =环绕组Section Circumdati |
新萨托菌属Neosartorya | 有性型异名Sexual synonym | =烟色组Section Fumigati |
石座菌属Petromyces | 有性型异名Sexual synonym | =黄色组Section Flavi |
单瓶霉属Phialosimplex | 无性型异名Asexual synonym | =多拟青霉亚属Subgenus Polypaecilum |
多拟青霉属Polypaecilum | 无性型异名Asexual synonym | =Subgenus Polypaecilum |
核闭壳属Sclerocleista | 从曲霉属移除Excluded from Aspergillus | 独立Independent |
束梗丛霉属Stilbothamnium | 有性型异名Sexual synonym | 废弃异名Discarded synonym |
基因片段 Gene fragment | 退火温度 Annealing temperature/℃ | 循环次数 Cycles | 引物 Primer | 引物方向 Direction | 引物序列 Primer sequence(5'-3') |
---|---|---|---|---|---|
核糖体内部转录间隔区ITS | 55 | 35 | ITS1 | 正向Forward | TCC GTA GGT GAA CCT GCG G |
ITS4 | 反向Reverse | TCC TCC GCT TAT TGA TAT GC | |||
β-微管蛋白基因BenA | 55 | 35 | Bt2a | 正向Forward | GGT AAC CAA ATC GGT GCT GCT TTC |
Bt2b | 反向Reverse | ACC CTC AGT GTA GTG ACC CTT GGC | |||
钙调蛋白基因CaM | 55 | 35 | CMD5 | 正向Forward | CCG AGT ACA AGG ARG CCT TC |
CMD6 | 反向Reverse | CCG ATR GAG GTC ATR ACG TGG | |||
RNA聚合酶II的第2大亚基 RPB2 | 梯度50-52-55 (alt.:48-50-52) | 5-5-30 | 5F | 正向Forward | GAY GAY MGW GAT CAY TTY GG |
7CR | 反向Reverse | CCC ATR GCT TGY TTR CCC AT |
表2 曲霉属真菌PCR基因片段,引物及相关参数
Table 2 Gene fragments,primers and related PCR parameters of Aspergillus fungi
基因片段 Gene fragment | 退火温度 Annealing temperature/℃ | 循环次数 Cycles | 引物 Primer | 引物方向 Direction | 引物序列 Primer sequence(5'-3') |
---|---|---|---|---|---|
核糖体内部转录间隔区ITS | 55 | 35 | ITS1 | 正向Forward | TCC GTA GGT GAA CCT GCG G |
ITS4 | 反向Reverse | TCC TCC GCT TAT TGA TAT GC | |||
β-微管蛋白基因BenA | 55 | 35 | Bt2a | 正向Forward | GGT AAC CAA ATC GGT GCT GCT TTC |
Bt2b | 反向Reverse | ACC CTC AGT GTA GTG ACC CTT GGC | |||
钙调蛋白基因CaM | 55 | 35 | CMD5 | 正向Forward | CCG AGT ACA AGG ARG CCT TC |
CMD6 | 反向Reverse | CCG ATR GAG GTC ATR ACG TGG | |||
RNA聚合酶II的第2大亚基 RPB2 | 梯度50-52-55 (alt.:48-50-52) | 5-5-30 | 5F | 正向Forward | GAY GAY MGW GAT CAY TTY GG |
7CR | 反向Reverse | CCC ATR GCT TGY TTR CCC AT |
曲霉种类Species | 功能特征Function and characteristics | 基因组Genomic |
---|---|---|
黑曲霉 A.niger | 制酱、酿酒、制醋,柠檬酸生产重要的发酵菌种,生物工程广泛应用 Important fermentation and bioengineering fungi,widely used in the producting of sauce,wine,vinegar,and citric acid | 34 Mb,8条染色体 34 Mb,8 chromosomes |
棒曲霉 A. clavatus | 产生棒曲霉素,对人和动物致病 Producing patulin,and it causes disease to human and animal | 35 Mb,5条染色体 35 Mb,5 chromosomes |
黄曲霉 A. flavus | 污染谷物、食品等,产生黄曲霉毒素 Contaminate grain,food,and produce aflatoxin | 约36 Mb,8条染色体 About 36 Mb,8 chromosomes |
烟曲霉 A. fumigatus | 条件致病真菌,超过念珠菌成为临床常见的真菌感染 Conditional pathogenic fungi,becoming clinical common fungal infections beyond Candida | 30 Mb,8个染色体 30 Mb,8 chromosomes |
费氏曲霉 A.fischeri = Neosartorya fischeri | 可引起角膜炎和移植病人肺部曲霉病 Cause keratitis and pulmonary Aspergillosis in clinical lung-transplant patients | 约35 Mb,5条染色体 About 35 Mb,5 chromosomes |
米曲霉 A. oryzae | 食品酿造工业广泛应用发酵菌株 Fermentation strains are widely used in food brewing industry | 37 Mb,8条染色体 37 Mb,8 chromosomes |
构巢曲霉 A. nidulans = Emericella nidulans | 遗传学和生物化学研究重要模式生物 Important model organism for genetics and biochemistry research | 约31 Mb,8条染色体 About 31 Mb,8 chromosomes |
土曲霉 A. terreus | 产生临床有关的次生代谢产物——洛伐他汀,具有降血脂功效 Produce a clinically relevant secondary metabolite,lovastatin,which has the effect of lowering blood lipid | 约35 Mb,8条染色体 About 35 Mb,8 chromosomes |
表3 曲霉重要种类的基因组分析情况
Table 3 Genomic analysis of important Aspergillus species
曲霉种类Species | 功能特征Function and characteristics | 基因组Genomic |
---|---|---|
黑曲霉 A.niger | 制酱、酿酒、制醋,柠檬酸生产重要的发酵菌种,生物工程广泛应用 Important fermentation and bioengineering fungi,widely used in the producting of sauce,wine,vinegar,and citric acid | 34 Mb,8条染色体 34 Mb,8 chromosomes |
棒曲霉 A. clavatus | 产生棒曲霉素,对人和动物致病 Producing patulin,and it causes disease to human and animal | 35 Mb,5条染色体 35 Mb,5 chromosomes |
黄曲霉 A. flavus | 污染谷物、食品等,产生黄曲霉毒素 Contaminate grain,food,and produce aflatoxin | 约36 Mb,8条染色体 About 36 Mb,8 chromosomes |
烟曲霉 A. fumigatus | 条件致病真菌,超过念珠菌成为临床常见的真菌感染 Conditional pathogenic fungi,becoming clinical common fungal infections beyond Candida | 30 Mb,8个染色体 30 Mb,8 chromosomes |
费氏曲霉 A.fischeri = Neosartorya fischeri | 可引起角膜炎和移植病人肺部曲霉病 Cause keratitis and pulmonary Aspergillosis in clinical lung-transplant patients | 约35 Mb,5条染色体 About 35 Mb,5 chromosomes |
米曲霉 A. oryzae | 食品酿造工业广泛应用发酵菌株 Fermentation strains are widely used in food brewing industry | 37 Mb,8条染色体 37 Mb,8 chromosomes |
构巢曲霉 A. nidulans = Emericella nidulans | 遗传学和生物化学研究重要模式生物 Important model organism for genetics and biochemistry research | 约31 Mb,8条染色体 About 31 Mb,8 chromosomes |
土曲霉 A. terreus | 产生临床有关的次生代谢产物——洛伐他汀,具有降血脂功效 Produce a clinically relevant secondary metabolite,lovastatin,which has the effect of lowering blood lipid | 约35 Mb,8条染色体 About 35 Mb,8 chromosomes |
机构名称 Name of institution | 曲霉属Aspergillus | 散囊菌属Eurotium | 裸胞壳属Emericella | 新萨托菌属Neosartorya | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
种数Number of species | 菌株数Number of strains | 种数Number of species | 菌株数Number of strains | 种数Number of species | 菌株数 Number of strains | 种数Number of species | 菌株数Number of strains | |||||
中国普通微生物菌种保藏管理中心CGMCC | 146 | 1 465 | 0 | 0 | 0 | 0 | 0 | 0 | ||||
中国工业微生物菌种保藏管理中心CICC | 71 | 1 440 | 5 | 20 | 1 | 1 | 1 | 1 | ||||
中国药学微生物菌种保藏管理中心CPCC | 31 | 612 | 2 | 2 | 2 | 15 | 2 | 36 | ||||
中国农业微生物菌种保藏管理中心ACCC | 58 | 343 | 7 | 24 | 4 | 20 | 4 | 5 | ||||
中国林业微生物菌种保藏管理中心CFCC | 28 | 226 | 1 | 3 | 1 | 1 | 0 | 0 | ||||
海洋微生物菌种保藏管理中心MCCC | 24 | 201 | 1 | 1 | 0 | 0 | 1 | 1 | ||||
中国典型培养物保藏中心CCTCC | 16 | 149 | 0 | 0 | 0 | 0 | 0 | 0 | ||||
广东省微生物菌种保藏中心GDMCC | 8 | 20 | 0 | 0 | 0 | 0 | 0 | 0 | ||||
中国兽医微生物菌种保藏管理中心CVCC | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
表4 我国主要菌种保藏机构收集曲霉及主要有性型属情况
Table 4 Information of Aspergillus and major related teleomorph by major strain collection institutions in China
机构名称 Name of institution | 曲霉属Aspergillus | 散囊菌属Eurotium | 裸胞壳属Emericella | 新萨托菌属Neosartorya | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
种数Number of species | 菌株数Number of strains | 种数Number of species | 菌株数Number of strains | 种数Number of species | 菌株数 Number of strains | 种数Number of species | 菌株数Number of strains | |||||
中国普通微生物菌种保藏管理中心CGMCC | 146 | 1 465 | 0 | 0 | 0 | 0 | 0 | 0 | ||||
中国工业微生物菌种保藏管理中心CICC | 71 | 1 440 | 5 | 20 | 1 | 1 | 1 | 1 | ||||
中国药学微生物菌种保藏管理中心CPCC | 31 | 612 | 2 | 2 | 2 | 15 | 2 | 36 | ||||
中国农业微生物菌种保藏管理中心ACCC | 58 | 343 | 7 | 24 | 4 | 20 | 4 | 5 | ||||
中国林业微生物菌种保藏管理中心CFCC | 28 | 226 | 1 | 3 | 1 | 1 | 0 | 0 | ||||
海洋微生物菌种保藏管理中心MCCC | 24 | 201 | 1 | 1 | 0 | 0 | 1 | 1 | ||||
中国典型培养物保藏中心CCTCC | 16 | 149 | 0 | 0 | 0 | 0 | 0 | 0 | ||||
广东省微生物菌种保藏中心GDMCC | 8 | 20 | 0 | 0 | 0 | 0 | 0 | 0 | ||||
中国兽医微生物菌种保藏管理中心CVCC | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
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