生物技术通报 ›› 2023, Vol. 39 ›› Issue (3): 89-100.doi: 10.13560/j.cnki.biotech.bull.1985.2022-0810
余世洲1(), 曹领改1, 王世泽1,2, 刘勇1,3, 边文杰4, 任学良1()
收稿日期:
2022-06-30
出版日期:
2023-03-26
发布日期:
2023-04-10
通讯作者:
任学良,男,博士,研究员,研究方向:烟草遗传育种;E-mail:renxl@126.com作者简介:
余世洲,男,博士,副研究员,研究方向:烟草遗传育种;E-mail:yusz@nwafu.edu.cn
基金资助:
YU Shi-zhou1(), CAO Ling-gai1, WANG Shi-ze1,2, LIU Yong1,3, BIAN Wen-jie4, REN Xue-liang1()
Received:
2022-06-30
Published:
2023-03-26
Online:
2023-04-10
摘要:
基于KASP(kompetitive allele specific PCR)技术平台,开发并验证可用于烟草核心种质基因分型的SNP(single nucleotide polymorphism)标记和对应检测引物,为烟草种质基因型鉴定评价、遗传多样性分析、核心种质筛选等提供技术和数据支持。利用Python和Perl脚本程序对覆盖烟草全基因组的1 179 154个SNP位点进行KASP引物设计和筛选,并通过试验验证其准确度和可用性。结果共有217 621个SNP位点完成了对应KASP引物设计,选择1 378个SNP位点进行试验验证,明确了732个可作为SNP标记,并确定48个SNP标记作为烟草种质资源基因分型的核心标记。这48个核心标记在烟草24条染色体上平均分布,平均PIC为0.36,平均MAF为0.39。利用确定的48个核心SNP标记,可以将各供试种质特别是将当前主栽烟草品种基因型进行区分,且标记具有极高的可靠性。
余世洲, 曹领改, 王世泽, 刘勇, 边文杰, 任学良. 烟草种质基因分型核心SNP标记的开发[J]. 生物技术通报, 2023, 39(3): 89-100.
YU Shi-zhou, CAO Ling-gai, WANG Shi-ze, LIU Yong, BIAN Wen-jie, REN Xue-liang. Development Core SNP Markers for Tobacco Germplasm Genotyping[J]. Biotechnology Bulletin, 2023, 39(3): 89-100.
序号 No. | 种质库编号 GenBank number | 种质名称 Accession name | 调制类型 Curing status | 序号 No. | 资源库编号 GenBank number | 种质名称 Accession name | 调制类型 Curing status | |
---|---|---|---|---|---|---|---|---|
1 | FD002 | 独山软杆Dushanruangan | 烤烟 Flue-cured | 76 | XZ018 | PX5 | 烤烟 Flue-cured | |
2 | FD011 | 福泉团叶摺烟 Fuquan tanyezheyan | 烤烟Flue-cured | 77 | XZ019 | PX6 | 烤烟 Flue-cured | |
3 | FD032 | 麻将大红花 Majiangdahonghua | 烤烟Flue-cured | 78 | XZ020 | PX7 | 烤烟 Flue-cured | |
4 | FD041 | 黔江一号Qianjiangyihao | 烤烟Flue-cured | 79 | XZ021 | PX8 | 烤烟 Flue-cured | |
5 | FD047 | 瓮安中坪烤烟 Wenganzhongpingkaoyan | 烤烟 Flue-cured | 80 | XZ022 | PX9 | 烤烟 Flue-cured | |
6 | FS054 | 柳叶尖0695 Liuyejian 0695 | 烤烟 Flue-cured | 81 | XZ023 | PX10 | 烤烟 Flue-cured | |
7 | FS070 | 胎里富1011 Tailifu 1011 | 烤烟 Flue-cured | 82 | XZ024 | PX11 | 烤烟 Flue-cured | |
8 | FS071 | 歪把子Waibazi | 烤烟 Flue-cured | 83 | XZ025 | PX12 | 烤烟 Flue-cured | |
9 | FY064 | 哲伍毛烟Zhewumaoyan | 烤烟 Flue-cured | 84 | XZ026 | PX13 | 烤烟 Flue-cured | |
10 | FY061 | 片片黄Pianpianhuang | 烤烟 Flue-cured | 85 | XZ027 | PX14 | 烤烟 Flue-cured | |
11 | FG015 | Coker86 | 烤烟 Flue-cured | 86 | XZ028 | PX15 | 烤烟 Flue-cured | |
12 | FG018 | Dixie Bright 101 | 烤烟 Flue-cured | 87 | XZ029 | PX17 | 烤烟 Flue-cured | |
13 | FG024 | Hicks | 烤烟 Flue-cured | 88 | XZ030 | PX19 | 烤烟 Flue-cured | |
14 | FG027 | K149 | 烤烟 Flue-cured | 89 | SG003 | 安龙护耳大柳叶 Anlonghuerdaliuye | 晒烟 Sun-cured | |
15 | FG029 | K346 | 烤烟 Flue-cured | 90 | SG009 | 安顺二吊枝 Anshunerdiaozhi | 晒烟 Sun-cured | |
16 | FG028 | K326 | 烤烟 Flue-cured | 91 | SG048 | 大方大红花 Dafangdahonghua | 晒烟 Sun-cured | |
17 | FG047 | NC567 | 烤烟 Flue-cured | 92 | SG052 | 大柳叶节骨密 Daliuyegumi | 晒烟 Sun-cured | |
18 | FG049 | NC729 | 烤烟 Flue-cured | 93 | SG069 | 德江中花烟(2) Dejiangzhonghuayan(2) | 晒烟 Sun-cured | |
19 | FG052 | NC82 | 烤烟 Flue-cured | 94 | SG079 | 光柄柳叶(罗) Guangbingliuye(luo) | 晒烟 Sun-cured | |
20 | FG053 | NC89 | 烤烟 Flue-cured | 95 | SG080 | 光柄柳叶(木) Guangbingliuye(mu) | 晒烟 Sun-cured | |
21 | FG054 | NC95 | 烤烟 Flue-cured | 96 | SG094 | 花溪大青杆 Huaxidaqinggan | 晒烟 Sun-cured | |
22 | FG061 | 牛津26 Oxford 26 | 烤烟 Flue-cured | 97 | SG102 | 惠水三都大白花 Huishuisandudabaihua | 晒烟 Sun-cured | |
23 | FG077 | RG11 | 烤烟 Flue-cured | 98 | SG112 | 凯里枇杷烟 Kailipipayan | 晒烟 Sun-cured | |
24 | FG079 | RG17 | 烤烟 Flue-cured | 99 | SG134 | 马耳烟Maeryan | 晒烟 Sun-cured | |
25 | FG080 | RG8 | 烤烟 Flue-cured | 100 | SG156 | 盘县大柳叶Panxiandaliuye | 晒烟 Sun-cured | |
26 | FG089 | Special 400 | 烤烟 Flue-cured | 101 | SG169 | 平塘中坝晒烟 Pingtangzhongbashaiyan | 晒烟 Sun-cured | |
27 | FG090 | Special 401 | 烤烟 Flue-cured | 102 | SG170 | 普安寸骨烟 Puancunguyan | 晒烟 Sun-cured | |
28 | FG094 | SpeightG-164 | 烤烟 Flue-cured | 103 | SG178 | 黔西红花吊把 Qianxihonghuadiaoba | 晒烟 Sun-cured | |
29 | FG095 | Speight G-28 | 烤烟 Flue-cured | 104 | SG248 | 贞丰柳叶烟 Zhenfengliuyeyan | 晒烟 Sun-cured | |
30 | FG099 | Speight G-80 | 烤烟 Flue-cured | 105 | SG258 | 镇远莲花烟(周) Zhenyuanlianhuayan(zhou) | 晒烟 Sun-cured | |
31 | FG100 | SPTG-172 | 烤烟 Flue-cured | 106 | SS006 | 81—26 | 晒烟 Sun-cured | |
32 | FG105 | Ti448A | 烤烟 Flue-cured | 107 | SS012 | Va309 | 晒烟 Sun-cured | |
33 | FG118 | Vesta 47 | 烤烟 Flue-cured | 108 | SS021 | 矮株一号Aizhuyihao | 晒烟 Sun-cured | |
34 | FG120 | 佛光Foguang | 烤烟 Flue-cured | 109 | SS027 | 把柄烟Babingyan | 晒烟 Sun-cured | |
35 | FG122 | Yellow mammoth | 烤烟 Flue-cured | 110 | SS045 | 大瓦垅Dawalong | 晒烟 Sun-cured | |
36 | FG071 | PVH06 | 烤烟 Flue-cured | 111 | SS053 | 风林一号Fenglinyihao | 晒烟 Sun-cured | |
37 | XZ001 | CV87 | 烤烟 Flue-cured | 112 | SS066 | 贺县公会晒烟 Hexiangonghuishaiyan | 晒烟 Sun-cured | |
38 | XZ002 | Cash | 烤烟 Flue-cured | 113 | SS075 | 护脖香1368 Huboxiang 1368 | 晒烟 Sun-cured | |
39 | XZ003 | Coker139 | 烤烟 Flue-cured | 114 | SS087 | 老山烟Laoshanyan | 晒烟 Sun-cured | |
40 | XZ004 | Gold doller | 烤烟 Flue-cured | 115 | SS091 | 马里村晒烟(二) Malicunshaiyan(2) | 晒烟 Sun-cured | |
41 | XZ005 | Mcnair 30 | 烤烟 Flue-cured | 116 | SS097 | 勐板晒烟 Mengbanshaiyan | 晒烟 Sun-cured | |
42 | XZ006 | Orinoco | 烤烟 Flue-cured | 117 | SS113 | 千层塔Qiancengta | 晒烟 Sun-cured | |
43 | XZ007 | Mammoth gold | 烤烟 Flue-cured | 118 | SS132 | 腾冲大柳叶 Tengchongdaliuye | 晒烟 Sun-cured | |
44 | XZ008 | Golden wilf | 烤烟 Flue-cured | 119 | SS142 | 小叶尖Xiaoyejian | 晒烟 Sun-cured | |
45 | XZ009 | CV91 | 烤烟 Flue-cured | 120 | SS146 | 一朵花Yiduohua | 晒烟 Sun-cured | |
46 | XZ010 | 云烟315Yunyan 315 | 烤烟 Flue-cured | 121 | SS164 | 大枇杷烟Dapipayan | 晒烟 Sun-cured | |
47 | FS027 | 大黄金5210 Dahuangjin 5210 | 烤烟 Flue-cured | 122 | SS169 | 金山乡旱烟 Jinshanxianghanyan | 晒烟 Sun-cured | |
48 | FS029 | 单育2号Danyu No.2 | 烤烟 Flue-cured | 123 | XZ031 | K17 | 晒烟 Sun-cured | |
49 | FS037 | 广黄55 Guanghuang 55 | 烤烟 Flue-cured | 124 | XZ032 | 寸三皮Cunsanpi | 晒烟 Sun-cured | |
50 | FS044 | 红星一号Hongxingyihao | 烤烟 Flue-cured | 125 | XZ033 | 九月寒Jiuyuehan | 晒烟 Sun-cured | |
51 | FS045 | 金星6007 Jinxing 6007 | 烤烟 Flue-cured | 126 | XZ034 | 三生烟Sanshengyan | 晒烟 Sun-cured | |
52 | FS050 | 净叶黄Jingyehuang | 烤烟 Flue-cured | 127 | BG012 | W.B68 | 白肋烟 Burley | |
53 | FS061 | 潘园黄Panyuanhuang | 烤烟 Flue-cured | 128 | BG018 | ky41A | 白肋烟Burley | |
54 | FS077 | 许金2号Xujin No. 2 | 烤烟 Flue-cured | 129 | BG023 | 半铁泡Bantiepao | 白肋烟Burley | |
55 | FS084 | 云烟87 Yunyan 87 | 烤烟 Flue-cured | 130 | BG029 | BY21 | 白肋烟Burley | |
56 | FS085 | 云烟2号Yunyan No.2 | 烤烟 Flue-cured | 131 | BG032 | KY10 | 白肋烟Burley | |
57 | FS089 | 中烟90 Zhongyan 90 | 烤烟 Flue-cured | 132 | BG033 | KY14 | 白肋烟Burley | |
58 | FY017 | 春雷三号 Chunlei No.3 | 烤烟 Flue-cured | 133 | AG002 | 从江塘洞烟 Congjiangtangdongyan | 晾烟Air-cured | |
59 | FY030 | 湄潭黑团壳 Meitanheituanke | 烤烟 Flue-cured | 134 | AG018 | 台江小柳叶 Taijiangxiaoliuye | 晾烟Air-cured | |
60 | FS083 | 云烟85 Yunyan 85 | 烤烟 Flue-cured | 135 | AG006 | 剑河乡洞土烟 Jianhexiangdongtuyan | 晾烟Air-cured | |
61 | XZ011 | 云烟97 Yunyan 97 | 烤烟 Flue-cured | 136 | GG001 | Ambale-ma | 雪茄烟 Cigar | |
62 | FY048 | 兴烟一号Xingyanyihao | 烤烟 Flue-cured | 137 | GG002 | Beinhart1000-1 | 雪茄烟 Cigar | |
63 | FT011 | 南江3号Nanjiang No.3 | 烤烟 Flue-cured | 138 | GG004 | Florida301 | 雪茄烟Cigar | |
64 | FY068 | 遵烟6号Zunyan No.6 | 烤烟 Flue-cured | 139 | GG005 | Pennbel 69 | 雪茄烟Cigar | |
65 | XZ012 | 中烟100 Zhongyan 100 | 烤烟 Flue-cured | 140 | XZ035 | 包皮Baopi | 雪茄烟Cigar | |
66 | FS032 | 贵烟3号Guiyan No.3 | 烤烟 Flue-cured | 141 | XZ036 | 坦桑尼亚烟 Tansangniyayan | 香料烟 Oriental | |
67 | FS087 | 中烟14 Zhongyan 14 | 烤烟 Flue-cured | 142 | TG002 | Adcook | 香料烟Oriental | |
68 | FS032 | 革新3号Gexin No.3 | 烤烟 Flue-cured | 143 | TG004 | Basma536 | 香料烟Oriental | |
69 | PG142 | K326LF | 烤烟 Flue-cured | 144 | TG006 | Cekpka | 香料烟Oriental | |
70 | FY094 | Q6 | 烤烟 Flue-cured | 145 | TG011 | xanthi-nc | 香料烟Oriental | |
71 | XZ013 | 瓮安2号Wengan No.2 | 烤烟 Flue-cured | 146 | XZ037 | YY1 | 药烟 Medicinal | |
72 | XZ014 | 2010A4 | 烤烟 Flue-cured | 147 | XZ038 | YY2 | 药烟Medicinal | |
73 | XZ015 | 兴烟2号Xingyan No.2 | 烤烟 Flue-cured | 148 | XZ039 | YY4 | 药烟Medicinal | |
74 | XZ016 | 99215-1 | 烤烟 Flue-cured | 149 | XZ040 | YY11 | 药烟Medicinal | |
75 | XZ017 | PX2 | 烤烟 Flue-cured | 150 | XZ041 | YY15 | 药烟Medicinal |
表1 烟草种质资源列表
Table 1 List of tobacco germplasm resources
序号 No. | 种质库编号 GenBank number | 种质名称 Accession name | 调制类型 Curing status | 序号 No. | 资源库编号 GenBank number | 种质名称 Accession name | 调制类型 Curing status | |
---|---|---|---|---|---|---|---|---|
1 | FD002 | 独山软杆Dushanruangan | 烤烟 Flue-cured | 76 | XZ018 | PX5 | 烤烟 Flue-cured | |
2 | FD011 | 福泉团叶摺烟 Fuquan tanyezheyan | 烤烟Flue-cured | 77 | XZ019 | PX6 | 烤烟 Flue-cured | |
3 | FD032 | 麻将大红花 Majiangdahonghua | 烤烟Flue-cured | 78 | XZ020 | PX7 | 烤烟 Flue-cured | |
4 | FD041 | 黔江一号Qianjiangyihao | 烤烟Flue-cured | 79 | XZ021 | PX8 | 烤烟 Flue-cured | |
5 | FD047 | 瓮安中坪烤烟 Wenganzhongpingkaoyan | 烤烟 Flue-cured | 80 | XZ022 | PX9 | 烤烟 Flue-cured | |
6 | FS054 | 柳叶尖0695 Liuyejian 0695 | 烤烟 Flue-cured | 81 | XZ023 | PX10 | 烤烟 Flue-cured | |
7 | FS070 | 胎里富1011 Tailifu 1011 | 烤烟 Flue-cured | 82 | XZ024 | PX11 | 烤烟 Flue-cured | |
8 | FS071 | 歪把子Waibazi | 烤烟 Flue-cured | 83 | XZ025 | PX12 | 烤烟 Flue-cured | |
9 | FY064 | 哲伍毛烟Zhewumaoyan | 烤烟 Flue-cured | 84 | XZ026 | PX13 | 烤烟 Flue-cured | |
10 | FY061 | 片片黄Pianpianhuang | 烤烟 Flue-cured | 85 | XZ027 | PX14 | 烤烟 Flue-cured | |
11 | FG015 | Coker86 | 烤烟 Flue-cured | 86 | XZ028 | PX15 | 烤烟 Flue-cured | |
12 | FG018 | Dixie Bright 101 | 烤烟 Flue-cured | 87 | XZ029 | PX17 | 烤烟 Flue-cured | |
13 | FG024 | Hicks | 烤烟 Flue-cured | 88 | XZ030 | PX19 | 烤烟 Flue-cured | |
14 | FG027 | K149 | 烤烟 Flue-cured | 89 | SG003 | 安龙护耳大柳叶 Anlonghuerdaliuye | 晒烟 Sun-cured | |
15 | FG029 | K346 | 烤烟 Flue-cured | 90 | SG009 | 安顺二吊枝 Anshunerdiaozhi | 晒烟 Sun-cured | |
16 | FG028 | K326 | 烤烟 Flue-cured | 91 | SG048 | 大方大红花 Dafangdahonghua | 晒烟 Sun-cured | |
17 | FG047 | NC567 | 烤烟 Flue-cured | 92 | SG052 | 大柳叶节骨密 Daliuyegumi | 晒烟 Sun-cured | |
18 | FG049 | NC729 | 烤烟 Flue-cured | 93 | SG069 | 德江中花烟(2) Dejiangzhonghuayan(2) | 晒烟 Sun-cured | |
19 | FG052 | NC82 | 烤烟 Flue-cured | 94 | SG079 | 光柄柳叶(罗) Guangbingliuye(luo) | 晒烟 Sun-cured | |
20 | FG053 | NC89 | 烤烟 Flue-cured | 95 | SG080 | 光柄柳叶(木) Guangbingliuye(mu) | 晒烟 Sun-cured | |
21 | FG054 | NC95 | 烤烟 Flue-cured | 96 | SG094 | 花溪大青杆 Huaxidaqinggan | 晒烟 Sun-cured | |
22 | FG061 | 牛津26 Oxford 26 | 烤烟 Flue-cured | 97 | SG102 | 惠水三都大白花 Huishuisandudabaihua | 晒烟 Sun-cured | |
23 | FG077 | RG11 | 烤烟 Flue-cured | 98 | SG112 | 凯里枇杷烟 Kailipipayan | 晒烟 Sun-cured | |
24 | FG079 | RG17 | 烤烟 Flue-cured | 99 | SG134 | 马耳烟Maeryan | 晒烟 Sun-cured | |
25 | FG080 | RG8 | 烤烟 Flue-cured | 100 | SG156 | 盘县大柳叶Panxiandaliuye | 晒烟 Sun-cured | |
26 | FG089 | Special 400 | 烤烟 Flue-cured | 101 | SG169 | 平塘中坝晒烟 Pingtangzhongbashaiyan | 晒烟 Sun-cured | |
27 | FG090 | Special 401 | 烤烟 Flue-cured | 102 | SG170 | 普安寸骨烟 Puancunguyan | 晒烟 Sun-cured | |
28 | FG094 | SpeightG-164 | 烤烟 Flue-cured | 103 | SG178 | 黔西红花吊把 Qianxihonghuadiaoba | 晒烟 Sun-cured | |
29 | FG095 | Speight G-28 | 烤烟 Flue-cured | 104 | SG248 | 贞丰柳叶烟 Zhenfengliuyeyan | 晒烟 Sun-cured | |
30 | FG099 | Speight G-80 | 烤烟 Flue-cured | 105 | SG258 | 镇远莲花烟(周) Zhenyuanlianhuayan(zhou) | 晒烟 Sun-cured | |
31 | FG100 | SPTG-172 | 烤烟 Flue-cured | 106 | SS006 | 81—26 | 晒烟 Sun-cured | |
32 | FG105 | Ti448A | 烤烟 Flue-cured | 107 | SS012 | Va309 | 晒烟 Sun-cured | |
33 | FG118 | Vesta 47 | 烤烟 Flue-cured | 108 | SS021 | 矮株一号Aizhuyihao | 晒烟 Sun-cured | |
34 | FG120 | 佛光Foguang | 烤烟 Flue-cured | 109 | SS027 | 把柄烟Babingyan | 晒烟 Sun-cured | |
35 | FG122 | Yellow mammoth | 烤烟 Flue-cured | 110 | SS045 | 大瓦垅Dawalong | 晒烟 Sun-cured | |
36 | FG071 | PVH06 | 烤烟 Flue-cured | 111 | SS053 | 风林一号Fenglinyihao | 晒烟 Sun-cured | |
37 | XZ001 | CV87 | 烤烟 Flue-cured | 112 | SS066 | 贺县公会晒烟 Hexiangonghuishaiyan | 晒烟 Sun-cured | |
38 | XZ002 | Cash | 烤烟 Flue-cured | 113 | SS075 | 护脖香1368 Huboxiang 1368 | 晒烟 Sun-cured | |
39 | XZ003 | Coker139 | 烤烟 Flue-cured | 114 | SS087 | 老山烟Laoshanyan | 晒烟 Sun-cured | |
40 | XZ004 | Gold doller | 烤烟 Flue-cured | 115 | SS091 | 马里村晒烟(二) Malicunshaiyan(2) | 晒烟 Sun-cured | |
41 | XZ005 | Mcnair 30 | 烤烟 Flue-cured | 116 | SS097 | 勐板晒烟 Mengbanshaiyan | 晒烟 Sun-cured | |
42 | XZ006 | Orinoco | 烤烟 Flue-cured | 117 | SS113 | 千层塔Qiancengta | 晒烟 Sun-cured | |
43 | XZ007 | Mammoth gold | 烤烟 Flue-cured | 118 | SS132 | 腾冲大柳叶 Tengchongdaliuye | 晒烟 Sun-cured | |
44 | XZ008 | Golden wilf | 烤烟 Flue-cured | 119 | SS142 | 小叶尖Xiaoyejian | 晒烟 Sun-cured | |
45 | XZ009 | CV91 | 烤烟 Flue-cured | 120 | SS146 | 一朵花Yiduohua | 晒烟 Sun-cured | |
46 | XZ010 | 云烟315Yunyan 315 | 烤烟 Flue-cured | 121 | SS164 | 大枇杷烟Dapipayan | 晒烟 Sun-cured | |
47 | FS027 | 大黄金5210 Dahuangjin 5210 | 烤烟 Flue-cured | 122 | SS169 | 金山乡旱烟 Jinshanxianghanyan | 晒烟 Sun-cured | |
48 | FS029 | 单育2号Danyu No.2 | 烤烟 Flue-cured | 123 | XZ031 | K17 | 晒烟 Sun-cured | |
49 | FS037 | 广黄55 Guanghuang 55 | 烤烟 Flue-cured | 124 | XZ032 | 寸三皮Cunsanpi | 晒烟 Sun-cured | |
50 | FS044 | 红星一号Hongxingyihao | 烤烟 Flue-cured | 125 | XZ033 | 九月寒Jiuyuehan | 晒烟 Sun-cured | |
51 | FS045 | 金星6007 Jinxing 6007 | 烤烟 Flue-cured | 126 | XZ034 | 三生烟Sanshengyan | 晒烟 Sun-cured | |
52 | FS050 | 净叶黄Jingyehuang | 烤烟 Flue-cured | 127 | BG012 | W.B68 | 白肋烟 Burley | |
53 | FS061 | 潘园黄Panyuanhuang | 烤烟 Flue-cured | 128 | BG018 | ky41A | 白肋烟Burley | |
54 | FS077 | 许金2号Xujin No. 2 | 烤烟 Flue-cured | 129 | BG023 | 半铁泡Bantiepao | 白肋烟Burley | |
55 | FS084 | 云烟87 Yunyan 87 | 烤烟 Flue-cured | 130 | BG029 | BY21 | 白肋烟Burley | |
56 | FS085 | 云烟2号Yunyan No.2 | 烤烟 Flue-cured | 131 | BG032 | KY10 | 白肋烟Burley | |
57 | FS089 | 中烟90 Zhongyan 90 | 烤烟 Flue-cured | 132 | BG033 | KY14 | 白肋烟Burley | |
58 | FY017 | 春雷三号 Chunlei No.3 | 烤烟 Flue-cured | 133 | AG002 | 从江塘洞烟 Congjiangtangdongyan | 晾烟Air-cured | |
59 | FY030 | 湄潭黑团壳 Meitanheituanke | 烤烟 Flue-cured | 134 | AG018 | 台江小柳叶 Taijiangxiaoliuye | 晾烟Air-cured | |
60 | FS083 | 云烟85 Yunyan 85 | 烤烟 Flue-cured | 135 | AG006 | 剑河乡洞土烟 Jianhexiangdongtuyan | 晾烟Air-cured | |
61 | XZ011 | 云烟97 Yunyan 97 | 烤烟 Flue-cured | 136 | GG001 | Ambale-ma | 雪茄烟 Cigar | |
62 | FY048 | 兴烟一号Xingyanyihao | 烤烟 Flue-cured | 137 | GG002 | Beinhart1000-1 | 雪茄烟 Cigar | |
63 | FT011 | 南江3号Nanjiang No.3 | 烤烟 Flue-cured | 138 | GG004 | Florida301 | 雪茄烟Cigar | |
64 | FY068 | 遵烟6号Zunyan No.6 | 烤烟 Flue-cured | 139 | GG005 | Pennbel 69 | 雪茄烟Cigar | |
65 | XZ012 | 中烟100 Zhongyan 100 | 烤烟 Flue-cured | 140 | XZ035 | 包皮Baopi | 雪茄烟Cigar | |
66 | FS032 | 贵烟3号Guiyan No.3 | 烤烟 Flue-cured | 141 | XZ036 | 坦桑尼亚烟 Tansangniyayan | 香料烟 Oriental | |
67 | FS087 | 中烟14 Zhongyan 14 | 烤烟 Flue-cured | 142 | TG002 | Adcook | 香料烟Oriental | |
68 | FS032 | 革新3号Gexin No.3 | 烤烟 Flue-cured | 143 | TG004 | Basma536 | 香料烟Oriental | |
69 | PG142 | K326LF | 烤烟 Flue-cured | 144 | TG006 | Cekpka | 香料烟Oriental | |
70 | FY094 | Q6 | 烤烟 Flue-cured | 145 | TG011 | xanthi-nc | 香料烟Oriental | |
71 | XZ013 | 瓮安2号Wengan No.2 | 烤烟 Flue-cured | 146 | XZ037 | YY1 | 药烟 Medicinal | |
72 | XZ014 | 2010A4 | 烤烟 Flue-cured | 147 | XZ038 | YY2 | 药烟Medicinal | |
73 | XZ015 | 兴烟2号Xingyan No.2 | 烤烟 Flue-cured | 148 | XZ039 | YY4 | 药烟Medicinal | |
74 | XZ016 | 99215-1 | 烤烟 Flue-cured | 149 | XZ040 | YY11 | 药烟Medicinal | |
75 | XZ017 | PX2 | 烤烟 Flue-cured | 150 | XZ041 | YY15 | 药烟Medicinal |
图2 开发的烟草SNP标记 A:KASP分型检测图,红色点是具有HEX/HEX型等位基因的种质材料,蓝色簇是具有FAM/FAM型等位基因的种质材料,绿色点表示具有HEX/FAM杂合基因型的种质材料, 灰色簇(NTC)是不含模版的空白对照;B:各染色体开发SNP标记数量统计;C:732个SNP位点在染色体上物理位置,右侧为SNP标记的编号,橘色表示该标记为确定的核心标记
Fig. 2 Developed tobacco SNP markers A: Genotyping map of KASP test, red dot is a germplasm with HEX/HEX allele, blue dot is a germplasm with FAM/FAM allele, green dot is a germplasm with HEX/FAM allele, and NTC: blank control without template. B: The number of the SNP marker on each chromosome. C: The physical location of 732 SNPs on chromosome, the numbers on the right are SNP markers ID, and the orange color shows that the SNP is core marker
图3 系统发育分析 A:150份供试材料基于48个核心SNP标记系统发育树分析;B:17份代表性烟草种质材料基于48个核心SNP标记系统发育树分析
Fig. 3 Phylogenetic analysis A: The phylogenetic tree of 150 tobacco germplasm based on 48 core SNP markers. B: The phylogenetic tree of 17 representative tobacco cultivars based on 48 core SNP markers
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