Biotechnology Bulletin ›› 2023, Vol. 39 ›› Issue (4): 81-92.doi: 10.13560/j.cnki.biotech.bull.1985.2022-0771
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HAN Hui(
), ZHANG Jian, REN Yu-hong(
)
Received:2022-06-25
Online:2023-04-26
Published:2023-05-16
HAN Hui, ZHANG Jian, REN Yu-hong. Molecular Modification of the Short-chain Dehydrogenase Lvchun and Its Application in the Synthesis of Chloromycetin[J]. Biotechnology Bulletin, 2023, 39(4): 81-92.
| 引物名称 Primer name | 引物序列 Primer sequence(5'-3') | 大小 Size/bp |
|---|---|---|
| P1 | CGCGGATCCAAGGAGATATACATATGAAGATTGTCTTAGTTCTTTATGAT | 50 |
| P2 | CGGCTCGAGTTTCTTATCGTGTTTACCGTAAGCTTTAGTAACGTA | 45 |
| P3 | ACCACCACCACCACCACTGAAAGGAGATATACATATGGGCAGCA | 44 |
| P4 | GCTTTGTTAGCAGCCGGATCTCAGACCTGGCTGAAGCCG | 39 |
| P5 | GATCCGGCTGCTAACAAAGC | 20 |
| P6 | TCAGTGGTGGTGGTGGTGGT | 20 |
Table 1 Primer sequences of co-expression genes
| 引物名称 Primer name | 引物序列 Primer sequence(5'-3') | 大小 Size/bp |
|---|---|---|
| P1 | CGCGGATCCAAGGAGATATACATATGAAGATTGTCTTAGTTCTTTATGAT | 50 |
| P2 | CGGCTCGAGTTTCTTATCGTGTTTACCGTAAGCTTTAGTAACGTA | 45 |
| P3 | ACCACCACCACCACCACTGAAAGGAGATATACATATGGGCAGCA | 44 |
| P4 | GCTTTGTTAGCAGCCGGATCTCAGACCTGGCTGAAGCCG | 39 |
| P5 | GATCCGGCTGCTAACAAAGC | 20 |
| P6 | TCAGTGGTGGTGGTGGTGGT | 20 |
| 短肽名称 Short peptide name | 氨基酸序列 Amino acid sequence | 大小 Size/aa |
|---|---|---|
| L1 | GGGGSGGGGS | 10 |
| L2 | GGGGSGGGGSGGGGS | 15 |
| L3 | EEEEKKKKEEEEKKKK | 15 |
| L4 | KAKLKEEEERKQREEEERIKRLEELAKRKEEERK | 34 |
| L5 | EEEEKKKQQEEEAERLRRIQEEMEKERKRREEDEERRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRKKK | 51 |
Table 2 Amino acid sequences of linkers to short peptides
| 短肽名称 Short peptide name | 氨基酸序列 Amino acid sequence | 大小 Size/aa |
|---|---|---|
| L1 | GGGGSGGGGS | 10 |
| L2 | GGGGSGGGGSGGGGS | 15 |
| L3 | EEEEKKKKEEEEKKKK | 15 |
| L4 | KAKLKEEEERKQREEEERIKRLEELAKRKEEERK | 34 |
| L5 | EEEEKKKQQEEEAERLRRIQEEMEKERKRREEDEERRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRKKK | 51 |
Fig. 4 Molecular docking of Lvchun and substrate AHNA Yellow indicates coenzyme NADH, blue indicates amino acid residue, and green indicates substrate AHNA
Fig. 6 Expression and purification of mut-V112Y in E. coli BL21(DE3) M: Marker. 1: Crude enzyme solution. 2: Wear-off solution. 3: 50 mmol/L imidazole eluent. 4: 200 mmol/L imidazole eluent. 5: 500 mmol/L imidazole eluent
| 酶 Enzyme | 比活力Specific activity/(U·mg-1) | 米氏常数Km/(mmol·L-1) | 转换数kcat/(s-1) | 催化效率常数kcat/Km/(mmol·L-1·s-1) |
|---|---|---|---|---|
| Lvchun | 5.64 | 2.45 | 68.22 | 27.84 |
| mut-V112Y | 10.06 | 1.57 | 85.18 | 54.25 |
Table 3 Specific activity and kinetic parameters of Lvchun and mut-V112Y
| 酶 Enzyme | 比活力Specific activity/(U·mg-1) | 米氏常数Km/(mmol·L-1) | 转换数kcat/(s-1) | 催化效率常数kcat/Km/(mmol·L-1·s-1) |
|---|---|---|---|---|
| Lvchun | 5.64 | 2.45 | 68.22 | 27.84 |
| mut-V112Y | 10.06 | 1.57 | 85.18 | 54.25 |
| 重组菌株名称 Name of recombinant strain | 羰基还原酶 mut-V112Y | 甲酸脱氢酶 CbFDH | 融合蛋白 Fusion proteins | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| T | S | P | T | S | P | T | S | P | ||||
| mut-V112Y-CbFDH | + + + + | + + + + | - | + + + | + + + | - | - | - | - | |||
| CbFDH-mut-V112Y | + + + | + + + | - | + + | + + | - | - | - | - | |||
| F-L1-LY | - | - | - | - | - | - | + + + | + + | + + | |||
| F-L2-LY | - | - | - | - | - | - | + + + | + + | + + | |||
| F-L3-LY | - | - | - | - | - | - | + + | + + | - | |||
| F-L4-LY | - | - | - | - | - | - | + | + | - | |||
| F-L5-LY | - | - | - | - | - | - | + | + | - | |||
| LY-L1-F | - | - | - | - | - | - | + + + | + + | + + | |||
| LY-L2-F | - | - | - | - | - | - | + + + | + + | + + | |||
| LY-L3-F | - | - | - | - | - | - | + + + | + + + | + | |||
| LY-L4-F | - | - | - | - | - | - | + + + | + + + | + | |||
| LY-L5-F | - | - | - | - | - | - | + + + | + + + | + | |||
Table 4 Expressions of recombinant proteins in E. coli BL21(DE3)
| 重组菌株名称 Name of recombinant strain | 羰基还原酶 mut-V112Y | 甲酸脱氢酶 CbFDH | 融合蛋白 Fusion proteins | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| T | S | P | T | S | P | T | S | P | ||||
| mut-V112Y-CbFDH | + + + + | + + + + | - | + + + | + + + | - | - | - | - | |||
| CbFDH-mut-V112Y | + + + | + + + | - | + + | + + | - | - | - | - | |||
| F-L1-LY | - | - | - | - | - | - | + + + | + + | + + | |||
| F-L2-LY | - | - | - | - | - | - | + + + | + + | + + | |||
| F-L3-LY | - | - | - | - | - | - | + + | + + | - | |||
| F-L4-LY | - | - | - | - | - | - | + | + | - | |||
| F-L5-LY | - | - | - | - | - | - | + | + | - | |||
| LY-L1-F | - | - | - | - | - | - | + + + | + + | + + | |||
| LY-L2-F | - | - | - | - | - | - | + + + | + + | + + | |||
| LY-L3-F | - | - | - | - | - | - | + + + | + + + | + | |||
| LY-L4-F | - | - | - | - | - | - | + + + | + + + | + | |||
| LY-L5-F | - | - | - | - | - | - | + + + | + + + | + | |||
Fig. 9 Optimization of reaction conditions A: Substrate tolerance; B: pH; C: temperature; D: concentration of lyophilized cell; E: concentration of NAD+; F: concentration of HCOONa
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