Biotechnology Bulletin ›› 2024, Vol. 40 ›› Issue (5): 300-309.doi: 10.13560/j.cnki.biotech.bull.1985.2023-1006

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Prediction of H5Nx Avian Influenza Virus Cross-reactivity CD4+ T-cell Epitopes

XIE Shuang1(), CHEN Yao2, HUANG Jun-qiong1()   

  1. 1. Department of Laboratory Medicine, Affiliated Hospital of Zunyi Medical University, Zunyi 563000
    2. Laboratory Department, Longchang People's Hospital, Longchang 642150
  • Received:2023-10-30 Online:2024-05-26 Published:2024-04-25
  • Contact: HUANG Jun-qiong E-mail:1172143123@qq.com;junqiongh@aliyun.com

Abstract:

Objective】To evaluate preexisting H5Nx cross-reactivity immune memory and to provide theoretical data for the prevention and treatment of human H5 avian influenza viruses and the development of broad-spectrum vaccines.【Method】Bioinformatics methods were used to screen the common conserved cross-reactivity CD4+ T cell epitopes of human H5Nx avian influenza viruses and seasonal influenza viruses, and further analysis of the nested CD8+ T cell epitopes and B cell epitopes of conserved epitopes and their coverage among the Chinese population.【Result】92.3%(513/555)of H5Nx CD4+ T cell epitopes were cross-reactivity in seasonal influenza A viruses, of which 172 epitopes nested CD8+ T cell epitopes and 5 epitopes nested B cell epitopes. These epitopes and the corresponding HLA-DRB1 alleles have a strong coverage rate of 88.65% in the world population.【Conclusion】Due to repeated exposure to seasonal influenza A viruses, there is a certain level of H5Nx cross-reactivity immune memory in the population that may provide partial protection from H5Nx infection.

Key words: H5Nx influenza virus, co-conserved, cross-reactivity, CD4+ T-cell epitopes, nested epitopes