Biotechnology Bulletin ›› 2019, Vol. 35 ›› Issue (3): 151-163.doi: 10.13560/j.cnki.biotech.bull.1985.2018-0759
Previous Articles Next Articles
QIAO Yu-chen, ZHOU Si-jing, SONG Mei-fang, WANG Ping, LIU Gui-jun
Received:
2018-08-30
Online:
2019-03-26
Published:
2019-04-03
QIAO Yu-chen, ZHOU Si-jing, SONG Mei-fang, WANG Ping, LIU Gui-jun. Research Progress on Molecular Genetics and Multi-omics of Dendrobium officinale[J]. Biotechnology Bulletin, 2019, 35(3): 151-163.
[1] 国家药典委员会. 中华人民共和国药典[M]. 2015年版. 北京:中国医药科技出版社, 2015. [2] 钱瑶. 铁皮石斛的食用方法[J]. 食品与健康, 2015, 2015(8):48. [3] 殷维, 黄晓聪. 铁皮石斛中华九大仙草之首[J]. 中南药学(用药与健康), 2017, 2017(3):8-13. [4] 国务院. 野生药材资源保护管理条例[J]. 药学实践杂志, 1988, 2:80-81. [5] 傅立国. 中国植物红皮书[M]. 北京:科学出版社, 1991. [6] 斯金平, 董洪秀, 廖新艳, 等. 一种铁皮石斛立体栽培方法的研究[J]. 中国中药杂志, 2014, 39(23):4576-4579. [7] Ni Z, Chen Z, Bai R, et al.Determination of trace elements in Dendrobium officinale cultivated in various conditions[J]. Analytical Letters, 2018, 51(5):648-658. [8] 王美娜. 绘制铁皮石斛全基因组图谱积极开展药用开发研究[J]. 科技成果管理与研究, 2016, 4:81-81. [9] Huang K, Li Y, Tao S, et al.Purification, characterization and biological activity of polysaccharides from Dendrobium officinale[J]. Molecules, 2016, 21(6):701. [10] He T, Huang Ya, Yang L, et al.Structural characterization and immunomodulating activity of polysaccharide from Dendrobium officinale[J]. Int J Biol Macromol, 2015, 83(10):34-41. [11] 杨宗鑫, 周敏, 陈春辉, 等. 一种铁皮石斛悬浮凝胶的制造方法:中国, CN105495570A[P].2016-04-20. [12] 邹晖, 林江波, 李海明, 等. 铁皮石斛人工栽培技术[J]. 福建农业科技, 2016, 47(5):38-40. [13] Mosher JJ, Bowman B, Bernberg E, et al.Improved performance of the PacBio SMRT technology for 16S rDNA sequencing[J]. Journal of Microbiological Methods, 2014, 104:59-60. [14] Zhang F, Wen Y, Guo X.CRISPR/Cas9 for genome editing:progress, implications and challenges[J]. Human Molecular Genetics, 2014, 23(R1):R40-46. [15] 丁鸽, 丁小余, 沈洁, 等. 铁皮石斛野生居群遗传多样性的RAPD分析与鉴别[J]. 药学学报, 2005, 40(11):1028-1032. [16] Ding G, Zhang D, Ding X, et al.Genetic variation and conservation of the endangered Chinese endemic herb Dendrobium officinale based on SRAP analysis[J]. Plant Systematics and Evolution, 2008, 276(3):149-156. [17] 包英华, 潘超美, 白音, 等. 铁皮石斛种质资源遗传多样性的SRAP分析[J]. 北京中医药大学学报, 2014, 37(5):349-353. [18] 丁鸽, 丁小余, 沈洁, 等. 铁皮石斛野生居群遗传多样性的RAPD分析与保护策略[C]. 全国药用植物和植物药学学术研讨会, 2005:184-188. [19] Borba E, Semir J, Shepherd GJ.Self-incompatibility, inbreeding depression and crossing potential in five Brazilian Pleurothallis(Orchidaceae)Species[J]. Annals of Botany, 2001, 88(1):89-99. [20] Hamrick JLM, Godt MJW.Effects of life history traits on genetic diversity in plant species[J]. Philosophical Transactions Biological Sciences, 1996, 351(1345):1291-1298. [21] 张铭, 黄华荣, 廖苏梅, 等. 石斛属RAPD分析及鉴定铁皮石斛的特异性引物设计[J]. 中国中药杂志, 2001, 26(7):442-447. [22] 王慧中, 卢江杰, 施农农, 等. 利用RAPD分析13种石斛属植物的遗传多样性和亲缘关系[J]. 中草药, 2006, 37(4):588-592. [23] 金波, 蒋福升, 余静, 等. 铁皮石斛的SCAR标记研究[J]. 中药材, 2010, 33(3):343-346. [24] 李怀志, 刘士辉, 沈若刚, 等. 铁皮石斛种质资源遗传多样性的SRAP分析及指纹图谱构建[J]. 安徽农业科学, 2017, 45(14):126-128. [25] 郭长奎, 于静, 罗淑萍. 新型分子标记TRAP应用研究进展[J]. 生命科学研究, 2009, 13(4):366-369. [26] 刘玲, 吴睿, 牛志韬, 等. 基于TRAP分子标记的铁皮石斛野生居群的分析与鉴别[J]. 药学学报, 2016, 51(12):1926-1933. [27] Akagi H, Yokozeki Y, Inagaki A, et al.Microsatellite DNA markers for rice chromosomes[J]. Theoretical & Applied Genetics, 1996, 93(7):1071-1077. [28] 陈士林, 宋经元. 本草基因组学[J]. 中国中药杂志, 2016, 41(21):3881-3889. [29] 谢明璐, 侯北伟, 韩丽, 等. 珍稀铁皮石斛SSR标记的开发及种质纯度鉴定[J]. 药学学报, 2010, 5:667-672. [30] 徐蕾, 刘莉, 彭少丹, 等. 利用SSR标记研究铁皮石斛的遗传多样性[J]. 分子植物育种, 2015, 13(7):1616-1622. [31] Hou B, Tian M, Luo J, et al.Genetic diversity assessment and ex situ conservation strategy of the endangered Dendrobium officinale(Orchidaceae)using new trinucleotide microsatellite markers[J]. Plant Systematics & Evolution, 2012, 298(8):1483-1491. [32] Xu W, Zhang F, Lu B, et al.Development of novel chloroplast microsatellite markers for Dendrobium officinale, and cross-amplification in other Dendrobium species(Orchidaceae)[J]. Scientia Horticulturae, 2011, 128(4):485-489. [33] Xu M, Liu X, Wang J, et al.Transcriptome sequencing and development of novel genic SSR markers for Dendrobium officinale[J]. Molecular Breeding, 2017, 37(2):18. [34] Shen J, Ding X, Liu D, et al.Intersimple sequence repeats(ISSR)molecular fingerprinting markers for authenticating populations of Dendrobium officinale Kimura et Migo[J]. Biological & Pharmaceutical Bulletin, 2006, 29(3):420-422. [35] Ding G, Li X, Ding X, et al.Genetic diversity across natural populations of Dendrobium officinale, the endangered medicinal herb endemic to China, revealed by ISSR and RAPD markers[J]. Genetika, 2009, 45(3):327-334. [36] 周娜, 李丹丹, 陶伟林, 等. 萝卜种质遗传多样性的ISSR, RAPD与RAMP分析[J]. 西南农业学报, 2015, 28(2):704-712. [37] 沈洁, 徐慧君, 袁英惠, 等. 铁皮石斛野生居群基于RAMP标记的遗传多样性评价[J]. 药学学报, 2011, 9:1156-1160. [38] Zabeau M, Vos P. Selective restriction fragment amplification:a general method for DNA fingerprinting:WO93006239[P].1993-04-01. [39] 王慧中, 卢江杰, 施农农, 等. 13种石斛属植物遗传多样性的AFLP分析[J]. 分子细胞生物学报, 2007, 40(3):205-210. [40] Li X, Ding X, Chu B, et al.Genetic diversity analysis and conservation of the endangered Chinese endemic herb Dendrobium officinale Kimura et Migo(Orchidaceae)based on AFLP[J]. Genetica, 2008, 133(2):159-166. [41] 李雅婷, 王红娟, 向增旭. 铁皮石斛同源四倍体与二倍体基因组及甲基化差异分析[J]. 核农学报, 2015, 29(10):1901-1908. [42] 关蕾, 樊洪泓, 陈沙沙, 等. 强光下H2S对石斛DNA甲基化及抗氧化系统的影响[J]. 核农学报, 2013, 27(8):1090-1098. [43] Collard BCY, Mackill DJ.Start codon targeted(SCoT)polymorphism:a simple, novel DNA marker technique for generating gene-targeted markers in plants[J]. Plant Molecular Biology Reporter, 2009, 27(1):86-93. [44] 袁王俊, 马寅峰, 董美芳, 等. 桂花SCoT标记体系的建立及其在遗传多样性分析中的应用[J]. 园艺学报, 2015, 34(3):569-575. [45] 赵瑞强, 高燕会, 章晓玲, 等. 铁皮石斛SCoT-PCR反应体系构建及优化[J]. 核农学报, 2012, 26(4):648-655. [46] 徐旭栋, 蒋瑞彬, 蓝小明, 等. 铁皮石斛SCoT-PCR反应体系的优化[J]. 中草药, 2012, 12:2481-2484. [47] 徐旭栋, 蒋瑞彬, 蓝小明, 等. 人工栽培铁皮石斛种质资源遗传多样性的SCoT分析[J]. 中华中医药杂志, 2013, 7:2123-2125. [48] Dalma-weiszhausz DD, Warrington J, Tanimoto EY, et al. The affymetrix GeneChip platform:an overview[J]. Methods Enzymol, 2006, 410:3-28. [49] Zhang Y, Wang J, Wang Z, et al.DNA microarray for identification of the herb of dendrobium species from Chinese medicinal formulations[J]. Planta Medica, 2003, 69(12):1172-1174. [50] Sze SCW, Zhang KYB, Shaw PC, et al.A DNA microarray for differentiation of(Fengdou Shihu)by its 5 S ribosomal DNA intergenic spacer region[J]. Biotechnology & Applied Biochemistry, 2011, 49(2):149-154. [51] 应依, 徐红, 王峥涛. DNA分子标记技术在中药石斛类药材鉴定中的应用[J]. 世界科学技术, 2006, 8(3):65-70. [52] 杨一令, 来平凡, 蒋士鹏. 铁皮石斛的研究进展[J]. 山东中医药大学学报, 2008, 32(1):82-85. [53] 丁小余, 王峥涛, 徐红, 等. 枫斗类石斛rDNA ITS区的全序列数据库及其序列分析鉴别[J]. 药学学报, 2002, 37(7):567-573. [54] Ding X, Wang Z, Zhou K, et al.Allele-specific primers for diagnostic PCR authentication of Dendrobium officinale[J]. Planta Medica, 2003, 69(6):587-588. [55] 滕艳芬, 吴晓俊, 徐红, 等. 石斛及其常见混淆品的matK基因序列比较[J]. 中国药科大学学报, 2002, 33(4):280-283. [56] Ding G, Xu G, Zhang W, et al.Preliminary geoherbalism study of Dendrobium officinale food by DNA molecular markers[J]. European Food Research & Technology, 2008, 227(4):1283-1286. [57] 武荣花, 康莹莹, 王洁琼, 等. 农杆菌介导的ACO反义基因对铁皮石斛的遗传转化[J]. 华北农学报, 2015, 30(2):17-21. [58] 崔波, 刘佳, 王洁琼, 等. 农杆菌介导的铁皮石斛遗传转化体系研究[J]. 河南农业大学学报, 2015, 49(2):208-212. [59] Kuehnle AR, Sugii N.Transformation of Dendrobium orchid using particle bombardment of protocorms[J]. Plant Cell Reports, 1992, 11(9):484-488. [60] Chia TF, Chan YS, Chua NH.The firefly luciferase gene as a non-invasive reporter for Dendrobium transformation[J]. Plant Journal, 1994, 6(3):441-446. [61] 杨雪飞, 王瑛, 罗建平. 铁皮石斛外源lea3基因的转化及耐盐性分析[J]. 应用与环境生物学报, 2010, 16(5):622-626. [62] Yan L, Wang X, Liu H, et al.The genome of Dendrobium officinale illuminates the biology of the important traditional Chinese orchid herb[J]. Molecular Plant, 2015, 8(6):922-934. [63] 严亮. 中国传统兰科药用植物铁皮石斛基因组及其生物学特性研究[D]. 长春:吉林大学, 2014. [64] Zhang G, Xu Q, Bian C, et al.The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution[J]. Scientific Reports, 2016, 6(19029):1-10. [65] 刘仲健, 张玉婷, 王玉, 等. 铁皮石斛(Dendrobium catenatum)快速繁殖的研究进展——兼论其学名与中名的正误[J]. 植物科学学报, 2011, 29(6):763-772. [66] Li X, Yang F, Henry RJ, et al.Plant DNA barcoding:from gene to genome[J]. Biological Reviews of the Cambridge Philosophical Society, 2015, 90(1):157-166. [67] Graham SW, Reeves PA, Burns ACE, et al.Microstructural changes in noncoding chloroplast DNA:interpretation, evolution, and utility of indels and inversions in basal angiosperm phylogenetic inference[J]. International Journal of Plant Sciences, 2000, 161(S6):83-96. [68] Luo J, Hou B, Niu Z, et al.Comparative chloroplast genomes of photosynthetic orchids:insights into evolution of the Orchidaceae and development of molecular markers for phylogenetic applications[J]. PLoS One, 2014, 9(6):e99016. [69] Yang P, Zhou H, Qian J, et al.The complete chloroplast genome sequence of Dendrobium officinale:Part A[C]//. National Symposium on Traditional Chinese Medicine and Natural Medicine, 2014, 27(2):1262-1264. [70] 吴超, 彭娟, 向林, 等. 基于高通量测序的铁皮石斛叶片转录组分析[J]. 分子植物育种, 2016, 14(12):3334-3346. [71] Meng Y, Yu D, Xue J, et al.A transcriptome-wide, organ-specific regulatory map of Dendrobium officinale, an important traditional Chinese orchid herb[J]. Scientific Reports, 2016, 6:18864. [72] 聂少平, 蔡海兰. 铁皮石斛活性成分及其功能研究进展[J]. 食品科学, 2012, 33(23):356-361. [73] Tang H, Zhao T, Sheng Y, et al.Dendrobium officinale Kimura et Migo:a review on its ethnopharmacology, phytochemistry, pharmacology, and industrialization[J]. Evidence-based Complementary and Alternative Medicine, 2017, 2017(5):1-19. [74] 王亚芸, 任建武. 石斛碱的研究进展[J]. 山东农业大学学报:自然科学版, 2015, 1:152-158. [75] Guo X, Li Y, Li C, et al.Analysis of the Dendrobium officinale transcriptome reveals putative alkaloid biosynthetic genes and genetic markers[J]. Gene, 2013, 527(1):131-138. [76] 罗慧玲, 蔡体育, 陈巧伦, 等. 石斛多糖增强脐带血和肿瘤病人外周血LAK细胞体外杀伤作用的研究[J]. 癌症, 2000, 19(12):1124-1126. [77] 周思静, 刘桂君, 周敏, 等. 石斛多糖的研究进展[J/OL]. 食品科学, 1-9[2018-08-21]. http://kns. cnki. net/kcms/detail/11.2206. TS. 20171212. 1550. 072. html. [78] Zhang J, He C, Wu K, et al.Transcriptome analysis of Dendrobium officinale and its application to the identification of genes associated with polysaccharide synthesis[J]. Frontiers in Plant Science, 2016, 7:5. [79] He C, Zhang J, Liu X, et al.Identification of genes involved in biosynthesis of mannan polysaccharides in Dendrobium officinale by RNA-seq analysis[J]. Plant Molecular Biology, 2015, 88(3):219-231. [80] Shen C, Guo H, Chen H, et al.Identification and analysis of genes associated with the synthesis of bioactive constituents in Dendrobium officinale using RNA-Seq[J]. Scientific Reports, 2017, 7(1):187. [81] He L, Fu S, Xu Z, et al.Hybrid sequencing of full-length cDNA transcripts of stems and leaves in Dendrobium officinale[J]. Genes, 2017, 8(10):257. [82] Chen L.SWEET sugar transporters for phloem transport and pathogen nutrition[J]. New Phytologist, 2014, 201(4):1150-1155. [83] Lemoine R.Sucrose transporters in plants:update on function and structure[J]. Biochimica et Biophysica Acta, 2000, 1465(1-2):246-262. [84] Wu Z, Jiang W, Chen S, et al.Insights from the cold transcriptome and metabolome of Dendrobium officinale:global reprogramming of metabolic and gene regulation networks during cold acclimation[J]. Frontiers in Plant Science, 2016, 7:1653. [85] Feng S, Jiao K, Guo H, et al.Succinyl-proteome profiling of Dendrobium officinale, an important traditional Chinese orchid herb, revealed involvement of succinylation in the glycolysis pathway[J]. BMC Genomics, 2017, 18(1):598. [86] Jin Q, Jiao C, Sun S, et al.Metabolic analysis of medicinal Dendrobium officinale and Dendrobium huoshanense during different growth years[J]. PLoS One, 2016, 11(1):e0146607. [87] 石丽敏, 卢华兵, 胡贤女. 主要环境因子对铁皮石斛生长发育的影响[J]. 浙江农业科学, 2014, 1(10):1528-1529. [88] Jin Z, Li D, Liu T, et al.Cultural endophytic fungi associated with Dendrobium officinale:identification, diversity estimation and their antimicrobial potential[J]. Current Science, 2017, 112(8):1690-1697. |
[1] | LIN Hong-yan, GUO Xiao-rui, LIU Di, LI Hui, LU Hai. Molecular Mechanism of Transcriptional Factor AtbHLH68 in Regulating Cell Wall Development by Transcriptome Analysis [J]. Biotechnology Bulletin, 2023, 39(9): 105-116. |
[2] | WANG Teng-hui, GE Wen-dong, LUO Ya-fang, FAN Zhen-yu, WANG Yu-shu. Gene Mapping of Kale White Leaves Based on Whole Genome Re-sequencing of Extreme Mixed Pool(BSA) [J]. Biotechnology Bulletin, 2023, 39(9): 176-182. |
[3] | MIAO Yong-mei, MIAO Cui-ping, YU Qing-cai. Properties of Bacillus subtilis Strain BBs-27 Fermentation Broth and the Inhibition of Lipopeptides Against Fusarium culmorum [J]. Biotechnology Bulletin, 2023, 39(9): 255-267. |
[4] | LI Xue-qi, ZHANG Su-jie, YU Man, HUANG Jin-guang, ZHOU Huan-bin. Establishment of CRISPR/CasX-based Genome Editing Technology in Rice [J]. Biotechnology Bulletin, 2023, 39(9): 40-48. |
[5] | FU Yu, JIA Rui-rui, HE He, WANG Liang-gui, YANG Xiu-lian. Growth Differences Among Grafted Seedlings with Two Rootstocks of Catalpa bungei and Comparative Analysis of Transcriptome [J]. Biotechnology Bulletin, 2023, 39(8): 251-261. |
[6] | FANG Lan, LI Yan-yan, JIANG Jian-wei, CHENG Sheng, SUN Zheng-xiang, ZHOU Yi. Isolation, Identification and Growth-promoting Characteristics of Endohyphal Bacterium 7-2H from Endophytic Fungi of Spiranthes sinensis [J]. Biotechnology Bulletin, 2023, 39(8): 272-282. |
[7] | RAO Zi-huan, XIE Zhi-xiong. Isolation and Identification of a Cellulose-degrading Strain of Olivibacter jilunii and Analysis of Its Degradability [J]. Biotechnology Bulletin, 2023, 39(8): 283-290. |
[8] | GUO Shao-hua, MAO Hui-li, LIU Zheng-quan, FU Mei-yuan, ZHAO Ping-yuan, MA Wen-bo, LI Xu-dong, GUAN Jian-yi. Whole Genome Sequencing and Comparative Genome Analysis of a Fish-derived Pathogenic Aeromonas Hydrophila Strain XDMG [J]. Biotechnology Bulletin, 2023, 39(8): 291-306. |
[9] | ZHANG Dao-lei, GAN Yu-jun, LE Liang, PU Li. Epigenetic Regulation of Yield-related Traits in Maize and Epibreeding [J]. Biotechnology Bulletin, 2023, 39(8): 31-42. |
[10] | SHI Jia-xin, LIU Kai, ZHU Jin-jie, QI Xian-tao, XIE Chuan-xiao, LIU Chang-lin. Gene Editing Reshaping Maize Plant Type for Increasing Hybrid Yield [J]. Biotechnology Bulletin, 2023, 39(8): 62-69. |
[11] | DU Dong-dong, QIAN Jing, LI Si-qi, LIU Wen-fei, WEI Xiang-li, LIU Chang-yong, LUO Rui-feng, KANG Li-chao. Whole Genome Sequencing and Analysis of Listeria monocytogenes Strain LMXJ15 [J]. Biotechnology Bulletin, 2023, 39(7): 298-306. |
[12] | LI Yu-zhen, MEI Tian-xiu, LI Zhi-wen, WANG Qi, LI Jun, ZOU Yue, ZHAO Xin-qing. Advances in Genomic Studies and Metabolic Engineering of Red Yeasts [J]. Biotechnology Bulletin, 2023, 39(7): 67-79. |
[13] | KONG De-zhen, DUAN Zhen-yu, WANG Gang, ZHANG Xin, XI Lin-qiao. Physiological Characteristics and Transcriptome Analysis of Sorghum bicolor × S. Sudanense Seedlings Under Salt-alkali Stress [J]. Biotechnology Bulletin, 2023, 39(6): 199-207. |
[14] | YIN Ming-hua, YU Huan-yuan, XIAO Xin-yi, WANG Yu-ting. Chloroplast Genomic Characterization and Phylogenetic Analysis of Colocasia esculenta L. Schoot var. cormosus cv. ‘Hongyayu’ from Jiangxi Yanshan [J]. Biotechnology Bulletin, 2023, 39(6): 233-247. |
[15] | ZHANG Lu-yang, HAN Wen-long, XU Xiao-wen, YAO Jian, LI Fang-fang, TIAN Xiao-yuan, ZHANG Zhi-qiang. Identification and Expression Analysis of the Tobacco TCP Gene Family [J]. Biotechnology Bulletin, 2023, 39(6): 248-258. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||