植物lncRNA及其对低温胁迫响应的研究进展

doi:10.13560/j.cnki.biotech.bull.1985.2023-0051

生物技术通报 ›› 2023, Vol. 39 ›› Issue (7): 1-12.doi: 10.13560/j.cnki.biotech.bull.1985.2023-0051

• 综述与专论 • 下一篇

植物lncRNA及其对低温胁迫响应的研究进展

陈晓¹(), 于茗兰¹, 吴隆坤², 郑晓明³^,⁴^,⁵, 逄洪波¹()

1.沈阳师范大学生命科学学院，沈阳 110034
2.沈阳师范大学粮食学院，沈阳 110034
3.中国农业科学院作物科学研究所农业农村部粮食作物基因资源评价利用重点实验室，北京 100081
4.海南三亚中国农业科学院国家南繁研究院，三亚 571700
5.国际水稻研究所，菲律宾马尼拉 DAPO box 7777

收稿日期:2023-01-19 出版日期:2023-07-26 发布日期:2023-08-17
通讯作者: 逄洪波，女，博士，副教授，研究方向：植物逆境分子生物学；E-mail: panghb@synu.edu.cn
作者简介:陈晓，女，硕士研究生，研究方向：生物化学与分子生物学；E-mail: 19861602091@163.com
基金资助:
国际地区合作与交流项目(32261143465);国家自然科学基金项目(31970237);辽宁省自然科学基金面上项目(2022-MS-309);沈阳师范大学“百人计划”拔尖人才项目(SSDBRJH2002012);沈阳师范大学重大项目孵化工程(ZD202104)

Research Progress in lncRNA and Their Responses to Low Temperature Stress in Plant

CHEN Xiao¹(), YU Ming-lan¹, WU Long-kun², ZHENG Xiao-ming³^,⁴^,⁵, PANG Hong-bo¹()

1. College of Life Science, Shenyang Normal University, Shenyang 110034
2. College of Grain Science and Technology, Shenyang Normal University, Shenyang 110034
3. Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Key Laboratory of Gene Resource Evaluation and Utilization of Food Crops, Ministry of Agriculture and Rural Affairs, Beijing 100081
4. Sanya National Research Institute of Breeding in Hainan, Chinese Academy of Agricultural Sciences, Sanya 571700
5. International Rice Research Institute, Metro Manila DAPO box 7777, Philippines

Received:2023-01-19 Published:2023-07-26 Online:2023-08-17

摘要/Abstract

摘要：

低温限制植物生长区域，决定种植范围；导致作物产量和品质下降，严重可能造成植株死亡。为了抵抗低温胁迫，植物进化出了复杂的防御机制。lncRNA是存在于细胞核和细胞质中、由体内基因组转录产生的一类转录本。近年来，已证实lncRNA可以通过多聚腺苷酸化、与某些蛋白酶协同作用、与miRNA竞争性结合等方式来响应植物低温胁迫。本文就lncRNA的定义、来源、分类以及低温条件下lncRNA在模式植物拟南芥和农经作物中的研究进展进行了总结，期望为植物耐低温机理研究及植物耐冷分子育种提供参考。

关键词: 低温胁迫, lncRNA, miRNA, 转录因子

Abstract:

Low temperature is a major limiting factor for plant growth and production, affecting planting range, crop yield, quality, and even causing death. To cope with low-temperature stress, plants have evolved complex defense mechanisms. lncRNAs are a group of transcripts generated by genomic transcription and found in both the cytoplasm and nucleus of cells. In recent years, researches have shown that lncRNAs respond to low-temperature stress in plants through mechanisms such as polyadenylation, synergistic effects with specific proteases, and competitive binding with miRNAs. This review provides a summary of the definition, origin, and classification of lncRNAs, with a focus on their roles in low-temperature stress response in the model plant Arabidopsis thaliana and agro-economic crops. The findings presented in this review will serve as a valuable reference for those studying plant low-temperature tolerance mechanisms and molecular breeding for cold-tolerance.

Key words: cold stress, lncRNA, miRNA, transcription factors

陈晓, 于茗兰, 吴隆坤, 郑晓明, 逄洪波. 植物lncRNA及其对低温胁迫响应的研究进展[J]. 生物技术通报, 2023, 39(7): 1-12.

CHEN Xiao, YU Ming-lan, WU Long-kun, ZHENG Xiao-ming, PANG Hong-bo. Research Progress in lncRNA and Their Responses to Low Temperature Stress in Plant[J]. Biotechnology Bulletin, 2023, 39(7): 1-12.

图/表 4

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lncRNA的名称 Name of lncRNA	物种 Species	功能 Function	机制 Mechanism	参考文献 Reference
COLDAIR	拟南芥 A. thaliana	参与春化作用 Involved in vernalization	信号、引导分子，抑制FLC的表达 Signal, guide molecules, and inhibit the expression of FLC	[54]
COLDWRAP	拟南芥 A. thaliana	参与春化作用 Involved in vernalization	抑制FLC的表达 Inhibit the expression of FLC	[55]
COOLAIR	拟南芥 A. thaliana	参与春化作用 Involved in vernalization	增加H3K27me3和降低H3K36me3转录来抑制FLC Inhibition of FLC by increasing H3K27me3 and decreasing H3K36me3 transcription	[56-57]
Svalka	拟南芥 A. thaliana	参与冷胁迫 Involved in cold stress	Svalka-asCBF1级联控制CBF1表达 Svalka-asCBF1 cascade controls CBF1 expression	[48]
CIL1	拟南芥 A. thaliana	参与冷胁迫 Involved in cold stress	影响活性氧或渗透调节物质来响应冷胁迫 Responding to cold stress by affecting reactive oxygen species or osmotic regulators	[49]
APOLO	拟南芥 A. thaliana	寒冷条件调节根毛伸长 Regulates root hair elongation under cold conditions	与转录因子WRKY42相互作用 Interacting with the TF WRKY42	[44]
TE-lincRNA11195	拟南芥 A. thaliana	参与冷胁迫 Involved in cold stress	水杨酸刺激反应基因可能是潜在靶标 Salicylic acid-induced response genes may be potential targets	[50]
DPA lncRNAs	水稻 O. sativa	参与冷胁迫 Involved in cold stress	多聚腺苷酸化来响应冷胁迫 Polyadenylation in response to cold stress	[59]
lncRNA-Chr03G0008	水稻 O. sativa	参与冷胁迫 Involved in cold stress	在幼苗中表达响应冷胁迫 Expressing response to cold stress in seedlings	[60]
lncRNA-SVR	水稻 O. sativa	低温下与种子活力相关 Associated with seed viability under low temperature	顺式基因SAUR家族成员相互作用 Interacting with the cis-gene family member SAUR	[61]
lncR9A, lncR117, lncR616	东农冬麦1号 T. aestivum（Dn1）	参与冷胁迫 Involved in cold stress	竞争性结合miR398间接调节CSD1的表达 Indirectly regulates the expression of CSD1 by competitively binding miR398	[65]
Traes_2BS_7A04BF5D5	小麦 Durum wheat	参与冷胁迫 Involved in cold stress	以WCOR413冷驯化基因为靶标响应冷胁迫 Responding to cold stress targeting the cold acclimation gene WCOR413	[64]
CRR5	木薯 M. esculenta	参与冷胁迫 Involved in cold stress	与蛋白激酶基因协同表达响应低温胁迫 Co-expression with protein kinase gene in response to low temperature stress	[67]
CRIR1	木薯 M. esculenta	参与冷胁迫 Involved in cold stress	招募MeCSP5来提高mRNA的翻译效率 Recruit MeCSP5 to improve the translation efficiency of mRNA	[68]
XH123	棉花 G. hirsutum	参与冷胁迫 Involved in cold stress	基因沉默引起冷调控基因PIF3等差异表达 Gene silencing induced differential expression of cold-regulated genes such as PIF3	[70]
	苜蓿 M. truncatula	参与冷胁迫 Involved in cold stress	构成lncRNA- MtCBFs调控网络 Construct lncRNA-MtCBFs regulatory network	[72]
	番茄 S. lycopersicum	参与冷胁迫 Involved in cold stress	竞争与共享miRNA来调控mRNA的表达 Competition and sharing of miRNAs to regulate mRNA expression	[74]
DE-lncRNAs	甜椒 C. annuum	参与冷胁迫 Involved in cold stress	调控与冷损伤相关的靶基因作为miRNAs前体响应冷胁迫 Regulating target genes related to cold damage Responding to cold stress as precursors of miRNAs	[75] [76]
	葡萄 V. vinifera	参与冷胁迫 Involved in cold stress	作为miRNAs的靶标 Being targets of miRNAs	[77]
	香蕉 M. balbisiana	参与冷胁迫 Involved in cold stress	调节类黄酮、蛋白激酶的生物合成以及TCA循环、硫传递系统等途径 Regulating the biosynthesis of flavonoids and protein kinases, as well as pathways such as the TCA cycle and sulfur transfer system	[45]

lncRNA的名称 Name of lncRNA	物种 Species	功能 Function	机制 Mechanism	参考文献 Reference
COLDAIR	拟南芥 A. thaliana	参与春化作用 Involved in vernalization	信号、引导分子，抑制FLC的表达 Signal, guide molecules, and inhibit the expression of FLC	[54]
COLDWRAP	拟南芥 A. thaliana	参与春化作用 Involved in vernalization	抑制FLC的表达 Inhibit the expression of FLC	[55]
COOLAIR	拟南芥 A. thaliana	参与春化作用 Involved in vernalization	增加H3K27me3和降低H3K36me3转录来抑制FLC Inhibition of FLC by increasing H3K27me3 and decreasing H3K36me3 transcription	[56-57]
Svalka	拟南芥 A. thaliana	参与冷胁迫 Involved in cold stress	Svalka-asCBF1级联控制CBF1表达 Svalka-asCBF1 cascade controls CBF1 expression	[48]
CIL1	拟南芥 A. thaliana	参与冷胁迫 Involved in cold stress	影响活性氧或渗透调节物质来响应冷胁迫 Responding to cold stress by affecting reactive oxygen species or osmotic regulators	[49]
APOLO	拟南芥 A. thaliana	寒冷条件调节根毛伸长 Regulates root hair elongation under cold conditions	与转录因子WRKY42相互作用 Interacting with the TF WRKY42	[44]
TE-lincRNA11195	拟南芥 A. thaliana	参与冷胁迫 Involved in cold stress	水杨酸刺激反应基因可能是潜在靶标 Salicylic acid-induced response genes may be potential targets	[50]
DPA lncRNAs	水稻 O. sativa	参与冷胁迫 Involved in cold stress	多聚腺苷酸化来响应冷胁迫 Polyadenylation in response to cold stress	[59]
lncRNA-Chr03G0008	水稻 O. sativa	参与冷胁迫 Involved in cold stress	在幼苗中表达响应冷胁迫 Expressing response to cold stress in seedlings	[60]
lncRNA-SVR	水稻 O. sativa	低温下与种子活力相关 Associated with seed viability under low temperature	顺式基因SAUR家族成员相互作用 Interacting with the cis-gene family member SAUR	[61]
lncR9A, lncR117, lncR616	东农冬麦1号 T. aestivum（Dn1）	参与冷胁迫 Involved in cold stress	竞争性结合miR398间接调节CSD1的表达 Indirectly regulates the expression of CSD1 by competitively binding miR398	[65]
Traes_2BS_7A04BF5D5	小麦 Durum wheat	参与冷胁迫 Involved in cold stress	以WCOR413冷驯化基因为靶标响应冷胁迫 Responding to cold stress targeting the cold acclimation gene WCOR413	[64]
CRR5	木薯 M. esculenta	参与冷胁迫 Involved in cold stress	与蛋白激酶基因协同表达响应低温胁迫 Co-expression with protein kinase gene in response to low temperature stress	[67]
CRIR1	木薯 M. esculenta	参与冷胁迫 Involved in cold stress	招募MeCSP5来提高mRNA的翻译效率 Recruit MeCSP5 to improve the translation efficiency of mRNA	[68]
XH123	棉花 G. hirsutum	参与冷胁迫 Involved in cold stress	基因沉默引起冷调控基因PIF3等差异表达 Gene silencing induced differential expression of cold-regulated genes such as PIF3	[70]
	苜蓿 M. truncatula	参与冷胁迫 Involved in cold stress	构成lncRNA- MtCBFs调控网络 Construct lncRNA-MtCBFs regulatory network	[72]
	番茄 S. lycopersicum	参与冷胁迫 Involved in cold stress	竞争与共享miRNA来调控mRNA的表达 Competition and sharing of miRNAs to regulate mRNA expression	[74]
DE-lncRNAs	甜椒 C. annuum	参与冷胁迫 Involved in cold stress	调控与冷损伤相关的靶基因作为miRNAs前体响应冷胁迫 Regulating target genes related to cold damage Responding to cold stress as precursors of miRNAs	[75] [76]
	葡萄 V. vinifera	参与冷胁迫 Involved in cold stress	作为miRNAs的靶标 Being targets of miRNAs	[77]
	香蕉 M. balbisiana	参与冷胁迫 Involved in cold stress	调节类黄酮、蛋白激酶的生物合成以及TCA循环、硫传递系统等途径 Regulating the biosynthesis of flavonoids and protein kinases, as well as pathways such as the TCA cycle and sulfur transfer system	[45]

植物lncRNA及其对低温胁迫响应的研究进展

Research Progress in lncRNA and Their Responses to Low Temperature Stress in Plant

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