Biotechnology Bulletin ›› 2019, Vol. 35 ›› Issue (10): 111-118.doi: 10.13560/j.cnki.biotech.bull.1985.2019-0394
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QI Jia-ming1, 2, 3, 4, SUN Shan-shan1, 2, 3, ZHANG Dong-xu1, 2, 3, XU Zhi-wen1, 2, 3, 4, XU Yan-ping1, 2, 3, 4
Received:
2019-05-08
Online:
2019-10-26
Published:
2019-09-30
QI Jia-ming, SUN Shan-shan, ZHANG Dong-xu, XU Zhi-wen, XU Yan-ping. Identification and Biocontrol Activity Analysis of Bacillus sp. BS-6 Based on Genome-wide Data[J]. Biotechnology Bulletin, 2019, 35(10): 111-118.
[1] Meinken C, Blencke HM, Ludwig H, et al.Expression of the glycolytic gapA operon in Bacillus subtilis:differential syntheses of proteins encoded by the operon[J]. Microbiology, 2003, 149(3):751-761. [2] Mukherjee S, Das P, Sen R.Towards commercial production of microbial surfactants[J]. Trends in Biotechnology, 2006, 24(11):509-515. [3] 赵朋超, 王建华, 权春善, 等. 枯草芽孢杆菌抗菌肽生物合成的研究进展[J]. 中国生物工程杂志, 2010, 30(10):108-113. [4] Leclère V, Béchet M, Adam A, et al.Mycosubtilin overproduction by Bacillus subtilis BBG100 enhances the organism's antagonistic and biocontrol activities[J]. Appl Environ Microbiol. , 2005, 71(8):4577-4584. [5] Stein T.Bacillus subtilis antibiotics:structures, syntheses and specific functions[J]. Molecular Microbiology, 2005, 56(4):845-857. [6] Nguyen ATV, Nguyen DV, Tran MT, et al.Isolation and characterization of Bacillus subtilis CH16 strain from chicken gastrointestinal tracts for use as a feed supplement to promote weight gain in broilers[J]. Letters in Applied Microbiology, 2015, 60(6):580-588. [7] Kim B, Lee S, Lyu M, et al.Identification of mycobacterial species by comparative sequence analysis of the RNA polymerase gene(rpoB)[J]. Journal of Clinical Microbiology, 1999, 37(6):1714-1720. [8] Wang LT, Lee FL, Tai CJ, et al.Comparison of gyrB gene sequences, 16S rRNA gene sequences and DNA-DNA hybridization in the Bacillus subtilis group[J]. International Journal of Systematic and Evolutionary Microbiology, 2007, 57(8):1846-1850. [9] Rosselló-Mora R.Updating prokaryotic taxonomy[J]. J Bacteriol, 2005, 187(18):6255-6257. [10] Richter M, Rosselló-Móra R.Shifting the genomic gold standard for the prokaryotic species definition[J]. Proceedings of the National Academy of Sciences of the United States of America, 2009, 106(45):19126-19131. [11] Konstantinidis KT, Tiedje J M.Genomic insights that advance the species definition for prokaryotes[J]. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102(7):2567-2572. [12] McCarthy BJ, Bolton ET. An approach to the measurement of genetic relatedness among organisms[J]. Proceedings of the National Academy of Sciences of the United States of America, 1963, 50(1):156. [13] Adamek M, Spohn M, Stegmann E, et al.Antibiotics[M]. New York:Humana Press, 2017. [14] Richter M, Rosselló-Móra R, Oliver Glöckner F, et al.JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison[J]. Bioinformatics, 2016, 32(6):929-931. [15] Meier-Kolthoff JP, Auch AF, Klenk HP, et al.Genome sequence-based species delimitation with confidence intervals and improved distance functions[J]. BMC Bioinformatics, 2013, 14(1):60-74. [16] Weber T, Blin K, Duddela S, et al.antiSMASH 3. 0-a comprehen-sive resource for the genome mining of biosynthetic gene clusters[J]. Nucleic Acids Research, 2015, 43(W1):W237-W243. [17] 冯兴, 潘康成, 张顺泉. 一株益生芽孢杆菌Pab02的16S rDNA测序鉴定[J]. 中国饲料, 2008(18):4-7. [18] Fukushima M, Kakinuma K, Kawaguchi R.Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence[J]. Journal of Clinical Microbiology, 2002, 40(8):2779-2785. [19] Nagao JI.Properties and applications of lantibiotics, a class of bacteriocins produced by Gram-positive bacteria[J]. Journal of Oral Biosciences, 2009, 51(3):158-164. [20] Spieβ T, Korn SM, Kötter P, et al.Autoinduction specificities of the lantibiotics subtilin and nisin[J]. Appl Environ Microbiol. , 2015, 81(22):7914-7923. [21] Fuchs SW, Jaskolla TW, Bochmann S, et al.Entianin, a novel subtilin-like lantibiotic from Bacillus subtilis subsp. spizizenii DSM 15029T with high antimicrobial activity[J]. Appl Environ Microbiol, 2011, 77(5):1698-1707. [22] Babasaki K, Takao T, Shimonishi Y, et al.Subtilosin A, a new antibiotic peptide produced by Bacillus subtilis 168:isolation, structural analysis, and biogenesis[J]. The Journal of Biochemistry, 1985, 98(3):585-603. [23] Liu Q, Gao G, Xu H, et al.Identification of the bacteriocin subtilosin A and loss of purL results in its high-level production in Bacillus amyloliquefaciens[J]. Research in Microbiology, 2012, 163(6-7):470-478. [24] Jasim B, Sreelakshmi KS, Mathew J, et al.Surfactin, iturin, and fengycin biosynthesis by endophytic Bacillus sp. from Bacopa monnieri[J]. Microbial Ecology, 2016, 72(1):106-119. [25] Singh P, Cameotra SS.Potential applications of microbial surfactants in biomedical sciences[J]. Trends in Biotechnology, 2004, 22(3):142-146. [26] Jain RM, Mody K, Joshi N, et al.Effect of unconventional carbon sources on biosurfactant production and its application in bioremediation[J]. International Journal of Biological Macromolecules, 2013, 62:52-58. [27] Al-Ajlani MM, Sheikh MA, Ahmad Z, et al.Production of surfactin from Bacillus subtilis MZ-7 grown on pharmamedia commercial medium[J]. Microbial Cell Factories, 2007, 6(1):17-25. [28] Chen WC, Juang RS, Wei YH.Applications of a lipopeptide biosurfactant, surfactin, produced by microorganisms[J]. Biochemical Engineering Journal, 2015, 103:158-169. [29] Banat IM, De Rienzo MAD, Quinn GA.Microbial biofilms:biosurfactants as antibiofilm agents[J]. Applied Microbiology and Biotechnology, 2014, 98(24):9915-9929. [30] Mnif I, Hammami I, Triki MA, et al.Antifungal efficiency of a lipopeptide biosurfactant derived from Bacillus subtilis SPB1 versus the phytopathogenic fungus, Fusarium solani[J]. Environmental Science and Pollution Research, 2015, 22(22):18137-18147. [31] Hotta K, Kim CY, Fox DT, et al.Siderophore-mediated iron acquisition in Bacillus anthracis and related strains[J]. Microbiology, 2010, 156(7):1918-1925. [32] Müller S, Strack SN, Hoefler BC, et al.Bacillaene and sporulation protect Bacillus subtilis from predation by Myxococcus xanthus[J]. Appl Environ Microbiol, 2014, 80(18):5603-5610. [33] Butcher RA, Schroeder FC, Fischbach MA, et al.The identification of bacillaene, the product of the PksX megacomplex in Bacillus subtilis[J]. Proceedings of the National Academy of Sciences, 2007, 104(5):1506-1509. [34] Besson F, Michel G.Action of mycosubtilin, an antifungal antibiotic of Bacillus subtilis, on the cell membrane of Saccharomyces cerevisiae[J]. Microbios, 1989, 59(239):113-121. [35] Thimon L, Peypoux F, Dana Maget R, et al.Interactions of bioactive lipopeptides, iturin A and surfactin from Bacillus subtilis[J]. Biotechnology and Applied Biochemistry, 1992, 16(2):144-151. [36] Borisova SA, Circello BT, Zhang JK, et al.Biosynthesis of rhizocticins, antifungal phosphonate oligopeptides produced by Bacillus subtilis ATCC6633[J]. Chemistry & Biology, 2010, 17(1):28-37. [37] Hourdou ML, Besson F.Surfactine et antibiotiques ituriniques:structure, propriétés et biosynthèse des lipopeptides de Bacillus subtilis[J]. Regard sur la biochimie, 1994(1):35-42. [38] Besson F, Peypoux F, Michel G, et al.Antifungal activity upon Saccharomyces cerevisiae of iturin A, mycosubtilin, bacillomycin L and of their derivatives;inhibition of this antifungal activity by lipid antagonists[J]. The Journal of Antibiotics, 1979, 32(8):828-833. |
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