Biotechnology Bulletin ›› 2020, Vol. 36 ›› Issue (3): 95-101.doi: 10.13560/j.cnki.biotech.bull.1985.2019-0956

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Development and Application of BE3 Cytidine Base Editor in Corynebacterium glutamicum

HUANG Hua-mei1, 2, 3, BAI Li-kuan1, 2, 3, LIU Ye2, 3, LI Jun-wei1, 2, 3, WANG Meng2, 3, HUA Er-bing1   

  1. 1. College of Biotechnology,Tianjin University of Science and Technology,Tianjin 300457;
    2. Key Laboratory of Systems Microbial Biotechnology,Chinese Academy of Sciences,Tianjin 300308;
    3. Tianjin Institute of Industrial Biotechnology,Chinese Academy of Sciences,Tianjin 300308
  • Received:2019-10-10 Online:2020-03-26 Published:2020-03-17

Abstract: The base editing technology,combining the targeted specificity of CRISPR/Cas system and the catalytic activity of cytidine deaminase,has been developed and widely applied in mammalian cells,plants and microorganism,due to not introducing double-stranded DNA break,a DNA template and relying on host homologous recombination repair pathway. In order to expand the application of base editing in Corynebacterium glutamicum,C to T conversion was achieved by fusing the cytidine deaminase(rAPOBEC1)and nCas9;however,the initial editing efficiency was low(0 to 20%). The base editor BE3 was then constructed by adding the UGI protein in the C terminus of the rAPOBEC1-nCas9 fusion,which inhibited the DNA base excise repair pathway and significantly improved the editing performance with the C to T conversion efficiency up to 90%. For convenience in future applications,the dual-plasmid base editing system was simplified to single-plasmid system,and the transformation efficiency was remarkably enhanced. Finally,by using other genomic loci as editing target,the single-plasmid based BE3 base editor was proved to be powerful with high editing efficiency and broad editing window(-11 to -19 positions upstream of the PAM sequence),which was beneficial to cover more target genomic loci and provided more tools for genome engineering of C. glutamicum.

Key words: base editing, Corynebacterium glutamicum, CRISPR/Cas9, cytidine deaminase