Biotechnology Bulletin ›› 2020, Vol. 36 ›› Issue (10): 80-87.doi: 10.13560/j.cnki.biotech.bull.1985.2020-0479
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ZHANG Ting-ting1,3(), TENG Li1,2, CAI Xiao-yao1, LONG Hui1, LI Sheng-yu1, LIU Hong-mei1()
Received:
2020-04-23
Online:
2020-10-26
Published:
2020-11-02
Contact:
LIU Hong-mei
E-mail:ztt-gd@163.com;hmliu@gmc.edu.cn
ZHANG Ting-ting, TENG Li, CAI Xiao-yao, LONG Hui, LI Sheng-yu, LIU Hong-mei. Genomic Characterization of a Totiviridae from the Ustilaginoidea virens Strain GZ-14-07[J]. Biotechnology Bulletin, 2020, 36(10): 80-87.
Virus names | Complete genome | Overlapping motif | 5'UTR motif | 3'UTR motif | Identity(CP) | Identity(RdRp) | H- type pseudoknot or stem-loop structure | Citation |
---|---|---|---|---|---|---|---|---|
U. virens RNA virus 6 | 5043 | AUGA | GGGCU | CAUCG | / | / | GAUGCggccAcagcCACUgcugggccUGCGC- CGCAAGUAUGA(stem-loop structure) | This study |
U. virens RNA virus 5 | 5221 | UAAUG | UGAAA | UCAAA | 38% | 38% | GAAGGggcgACcggccGCCGAGAGCCUggc- cgcgccGAAUAAUG(stem-loop structure) | [ |
U. virens RNA virus L | 5654 | UAAUG | CGAAA | UUUUU | 40% | 32% | CCCCAagcgCUgccccgcuGAGCgggcCGACU- CAAUCGUAAUG(H- type pseudoknot) | [ |
U. virens RNA virus 3 | 5075 | UAAUG | CGAAA | GCCAA | 73% | 75% | ggacACggcCACUGCCGguccUGCgccCAGG- AUAUAAUG(H- type pseudoknot) | [ |
U. virens RNA virus 1 strain Uv0901 | 5220 | UAAUG | UGAAA | GGCAA | 39% | 31% | UAGCGcugccccgcagAGUgggCCGACCCC- CGAGUAAUG(H- type pseudoknot) | [ |
U. virens RNA virus 1 strain JYH-ZT | 5567 | UAAUG | UGAAA | GGCAA | 39% | 31% | ACCUAgcgCUGccccgcAGAGUgggCCGAC- CCCCGAGUAAUG(H- type pseudoknot) | [ |
U. virens RNA virus 1 strain HNHS-1 | 5142 | UAAUG | AAGAU | ACAAA | 39% | 31% | UCAGUcgcugcUGCUCCgcaGgcgGGUGCU- GCUCAGUAAUG(stem-loop structure) | [ |
Virus names | Complete genome | Overlapping motif | 5'UTR motif | 3'UTR motif | Identity(CP) | Identity(RdRp) | H- type pseudoknot or stem-loop structure | Citation |
---|---|---|---|---|---|---|---|---|
U. virens RNA virus 6 | 5043 | AUGA | GGGCU | CAUCG | / | / | GAUGCggccAcagcCACUgcugggccUGCGC- CGCAAGUAUGA(stem-loop structure) | This study |
U. virens RNA virus 5 | 5221 | UAAUG | UGAAA | UCAAA | 38% | 38% | GAAGGggcgACcggccGCCGAGAGCCUggc- cgcgccGAAUAAUG(stem-loop structure) | [ |
U. virens RNA virus L | 5654 | UAAUG | CGAAA | UUUUU | 40% | 32% | CCCCAagcgCUgccccgcuGAGCgggcCGACU- CAAUCGUAAUG(H- type pseudoknot) | [ |
U. virens RNA virus 3 | 5075 | UAAUG | CGAAA | GCCAA | 73% | 75% | ggacACggcCACUGCCGguccUGCgccCAGG- AUAUAAUG(H- type pseudoknot) | [ |
U. virens RNA virus 1 strain Uv0901 | 5220 | UAAUG | UGAAA | GGCAA | 39% | 31% | UAGCGcugccccgcagAGUgggCCGACCCC- CGAGUAAUG(H- type pseudoknot) | [ |
U. virens RNA virus 1 strain JYH-ZT | 5567 | UAAUG | UGAAA | GGCAA | 39% | 31% | ACCUAgcgCUGccccgcAGAGUgggCCGAC- CCCCGAGUAAUG(H- type pseudoknot) | [ |
U. virens RNA virus 1 strain HNHS-1 | 5142 | UAAUG | AAGAU | ACAAA | 39% | 31% | UCAGUcgcugcUGCUCCgcaGgcgGGUGCU- GCUCAGUAAUG(stem-loop structure) | [ |
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