Research Progress in lncRNA and Their Responses to Low Temperature Stress in Plant

doi:10.13560/j.cnki.biotech.bull.1985.2023-0051

Abstract

Abstract:

Low temperature is a major limiting factor for plant growth and production, affecting planting range, crop yield, quality, and even causing death. To cope with low-temperature stress, plants have evolved complex defense mechanisms. lncRNAs are a group of transcripts generated by genomic transcription and found in both the cytoplasm and nucleus of cells. In recent years, researches have shown that lncRNAs respond to low-temperature stress in plants through mechanisms such as polyadenylation, synergistic effects with specific proteases, and competitive binding with miRNAs. This review provides a summary of the definition, origin, and classification of lncRNAs, with a focus on their roles in low-temperature stress response in the model plant Arabidopsis thaliana and agro-economic crops. The findings presented in this review will serve as a valuable reference for those studying plant low-temperature tolerance mechanisms and molecular breeding for cold-tolerance.

Key words: cold stress, lncRNA, miRNA, transcription factors

CHEN Xiao, YU Ming-lan, WU Long-kun, ZHENG Xiao-ming, PANG Hong-bo. Research Progress in lncRNA and Their Responses to Low Temperature Stress in Plant[J]. Biotechnology Bulletin, 2023, 39(7): 1-12.

Figures/Tables 4

References 77

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lncRNA的名称 Name of lncRNA	物种 Species	功能 Function	机制 Mechanism	参考文献 Reference
COLDAIR	拟南芥 A. thaliana	参与春化作用 Involved in vernalization	信号、引导分子，抑制FLC的表达 Signal, guide molecules, and inhibit the expression of FLC	[54]
COLDWRAP	拟南芥 A. thaliana	参与春化作用 Involved in vernalization	抑制FLC的表达 Inhibit the expression of FLC	[55]
COOLAIR	拟南芥 A. thaliana	参与春化作用 Involved in vernalization	增加H3K27me3和降低H3K36me3转录来抑制FLC Inhibition of FLC by increasing H3K27me3 and decreasing H3K36me3 transcription	[56-57]
Svalka	拟南芥 A. thaliana	参与冷胁迫 Involved in cold stress	Svalka-asCBF1级联控制CBF1表达 Svalka-asCBF1 cascade controls CBF1 expression	[48]
CIL1	拟南芥 A. thaliana	参与冷胁迫 Involved in cold stress	影响活性氧或渗透调节物质来响应冷胁迫 Responding to cold stress by affecting reactive oxygen species or osmotic regulators	[49]
APOLO	拟南芥 A. thaliana	寒冷条件调节根毛伸长 Regulates root hair elongation under cold conditions	与转录因子WRKY42相互作用 Interacting with the TF WRKY42	[44]
TE-lincRNA11195	拟南芥 A. thaliana	参与冷胁迫 Involved in cold stress	水杨酸刺激反应基因可能是潜在靶标 Salicylic acid-induced response genes may be potential targets	[50]
DPA lncRNAs	水稻 O. sativa	参与冷胁迫 Involved in cold stress	多聚腺苷酸化来响应冷胁迫 Polyadenylation in response to cold stress	[59]
lncRNA-Chr03G0008	水稻 O. sativa	参与冷胁迫 Involved in cold stress	在幼苗中表达响应冷胁迫 Expressing response to cold stress in seedlings	[60]
lncRNA-SVR	水稻 O. sativa	低温下与种子活力相关 Associated with seed viability under low temperature	顺式基因SAUR家族成员相互作用 Interacting with the cis-gene family member SAUR	[61]
lncR9A, lncR117, lncR616	东农冬麦1号 T. aestivum（Dn1）	参与冷胁迫 Involved in cold stress	竞争性结合miR398间接调节CSD1的表达 Indirectly regulates the expression of CSD1 by competitively binding miR398	[65]
Traes_2BS_7A04BF5D5	小麦 Durum wheat	参与冷胁迫 Involved in cold stress	以WCOR413冷驯化基因为靶标响应冷胁迫 Responding to cold stress targeting the cold acclimation gene WCOR413	[64]
CRR5	木薯 M. esculenta	参与冷胁迫 Involved in cold stress	与蛋白激酶基因协同表达响应低温胁迫 Co-expression with protein kinase gene in response to low temperature stress	[67]
CRIR1	木薯 M. esculenta	参与冷胁迫 Involved in cold stress	招募MeCSP5来提高mRNA的翻译效率 Recruit MeCSP5 to improve the translation efficiency of mRNA	[68]
XH123	棉花 G. hirsutum	参与冷胁迫 Involved in cold stress	基因沉默引起冷调控基因PIF3等差异表达 Gene silencing induced differential expression of cold-regulated genes such as PIF3	[70]
	苜蓿 M. truncatula	参与冷胁迫 Involved in cold stress	构成lncRNA- MtCBFs调控网络 Construct lncRNA-MtCBFs regulatory network	[72]
	番茄 S. lycopersicum	参与冷胁迫 Involved in cold stress	竞争与共享miRNA来调控mRNA的表达 Competition and sharing of miRNAs to regulate mRNA expression	[74]
DE-lncRNAs	甜椒 C. annuum	参与冷胁迫 Involved in cold stress	调控与冷损伤相关的靶基因作为miRNAs前体响应冷胁迫 Regulating target genes related to cold damage Responding to cold stress as precursors of miRNAs	[75] [76]
	葡萄 V. vinifera	参与冷胁迫 Involved in cold stress	作为miRNAs的靶标 Being targets of miRNAs	[77]
	香蕉 M. balbisiana	参与冷胁迫 Involved in cold stress	调节类黄酮、蛋白激酶的生物合成以及TCA循环、硫传递系统等途径 Regulating the biosynthesis of flavonoids and protein kinases, as well as pathways such as the TCA cycle and sulfur transfer system	[45]

lncRNA的名称 Name of lncRNA	物种 Species	功能 Function	机制 Mechanism	参考文献 Reference
COLDAIR	拟南芥 A. thaliana	参与春化作用 Involved in vernalization	信号、引导分子，抑制FLC的表达 Signal, guide molecules, and inhibit the expression of FLC	[54]
COLDWRAP	拟南芥 A. thaliana	参与春化作用 Involved in vernalization	抑制FLC的表达 Inhibit the expression of FLC	[55]
COOLAIR	拟南芥 A. thaliana	参与春化作用 Involved in vernalization	增加H3K27me3和降低H3K36me3转录来抑制FLC Inhibition of FLC by increasing H3K27me3 and decreasing H3K36me3 transcription	[56-57]
Svalka	拟南芥 A. thaliana	参与冷胁迫 Involved in cold stress	Svalka-asCBF1级联控制CBF1表达 Svalka-asCBF1 cascade controls CBF1 expression	[48]
CIL1	拟南芥 A. thaliana	参与冷胁迫 Involved in cold stress	影响活性氧或渗透调节物质来响应冷胁迫 Responding to cold stress by affecting reactive oxygen species or osmotic regulators	[49]
APOLO	拟南芥 A. thaliana	寒冷条件调节根毛伸长 Regulates root hair elongation under cold conditions	与转录因子WRKY42相互作用 Interacting with the TF WRKY42	[44]
TE-lincRNA11195	拟南芥 A. thaliana	参与冷胁迫 Involved in cold stress	水杨酸刺激反应基因可能是潜在靶标 Salicylic acid-induced response genes may be potential targets	[50]
DPA lncRNAs	水稻 O. sativa	参与冷胁迫 Involved in cold stress	多聚腺苷酸化来响应冷胁迫 Polyadenylation in response to cold stress	[59]
lncRNA-Chr03G0008	水稻 O. sativa	参与冷胁迫 Involved in cold stress	在幼苗中表达响应冷胁迫 Expressing response to cold stress in seedlings	[60]
lncRNA-SVR	水稻 O. sativa	低温下与种子活力相关 Associated with seed viability under low temperature	顺式基因SAUR家族成员相互作用 Interacting with the cis-gene family member SAUR	[61]
lncR9A, lncR117, lncR616	东农冬麦1号 T. aestivum（Dn1）	参与冷胁迫 Involved in cold stress	竞争性结合miR398间接调节CSD1的表达 Indirectly regulates the expression of CSD1 by competitively binding miR398	[65]
Traes_2BS_7A04BF5D5	小麦 Durum wheat	参与冷胁迫 Involved in cold stress	以WCOR413冷驯化基因为靶标响应冷胁迫 Responding to cold stress targeting the cold acclimation gene WCOR413	[64]
CRR5	木薯 M. esculenta	参与冷胁迫 Involved in cold stress	与蛋白激酶基因协同表达响应低温胁迫 Co-expression with protein kinase gene in response to low temperature stress	[67]
CRIR1	木薯 M. esculenta	参与冷胁迫 Involved in cold stress	招募MeCSP5来提高mRNA的翻译效率 Recruit MeCSP5 to improve the translation efficiency of mRNA	[68]
XH123	棉花 G. hirsutum	参与冷胁迫 Involved in cold stress	基因沉默引起冷调控基因PIF3等差异表达 Gene silencing induced differential expression of cold-regulated genes such as PIF3	[70]
	苜蓿 M. truncatula	参与冷胁迫 Involved in cold stress	构成lncRNA- MtCBFs调控网络 Construct lncRNA-MtCBFs regulatory network	[72]
	番茄 S. lycopersicum	参与冷胁迫 Involved in cold stress	竞争与共享miRNA来调控mRNA的表达 Competition and sharing of miRNAs to regulate mRNA expression	[74]
DE-lncRNAs	甜椒 C. annuum	参与冷胁迫 Involved in cold stress	调控与冷损伤相关的靶基因作为miRNAs前体响应冷胁迫 Regulating target genes related to cold damage Responding to cold stress as precursors of miRNAs	[75] [76]
	葡萄 V. vinifera	参与冷胁迫 Involved in cold stress	作为miRNAs的靶标 Being targets of miRNAs	[77]
	香蕉 M. balbisiana	参与冷胁迫 Involved in cold stress	调节类黄酮、蛋白激酶的生物合成以及TCA循环、硫传递系统等途径 Regulating the biosynthesis of flavonoids and protein kinases, as well as pathways such as the TCA cycle and sulfur transfer system	[45]