Biotechnology Bulletin ›› 2015, Vol. 31 ›› Issue (11): 9-17.doi: 10.13560/j.cnki.biotech.bull.1985.2015.11.005
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Yan Jun1, Guo Xingqi2, Cao Xuecheng1
Received:
2015-01-14
Online:
2015-11-26
Published:
2015-11-26
Yan Jun, Guo Xingqi, Cao Xuecheng. Progress of Genome-wide Researches on WRKY Transcription Factors[J]. Biotechnology Bulletin, 2015, 31(11): 9-17.
[1] Ishiguro S, Nakamura K. Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 5' upstream regions of genes coding for sporamin and beta-amylase from sweet potato[J]. Mol Gen Genet, 1994, 244(6): 563-571. [2] Eulgem T, Somssich IE. Networks of WRKY transcription factors in defense signaling[J]. Curr Opin Plant Biol, 2007, 10(4): 366-371. [3] 余迪求, 陈利钢, 张利平. 转录调控因子WRKY 超级家族[J]. 云南植物研究, 2006, 28(1): 69-77. [4] Eulgem T, Rushton PJ, et al. The WRKY superfamily of plant trans-cription factors[J]. Trends Plant Sci, 2000, 5(5): 199-206. [5] Jiang Y, Duan Y, Yin J, et al. Genome-wide identification and characterization of the Populus WRKY transcription factor family and analysis of their expression in response to biotic and abiotic stresses[J]. J Exp Bot, 2014, 65(22): 6629-6644. [6] Bakshi M, Oelmuller R. WRKY transcription factors: Jack of many trades in plants[J]. Plant Signal Behav, 2014, 9: e27700. [7] Rushton PJ, Somssich IE, Ringler P, et al. WRKY transcription factors[J]. Trends Plant Sci, 2010, 15(5): 247-258. [8] Ulker B, Somssich IE. WRKY transcription factors: from DNA binding towards biological function[J]. Curr Opin Plant Biol, 2004, 7(5): 491-498. [9] Zhang Y, Wang L. The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants[J]. BMC Evol Biol, 2005, 5: 1. [10] Wu KL, Guo ZJ, Wang HH, et al. The WRKY family of transcription factors in rice and Arabidopsis and their origins[J]. DNA Res, 2005, 12(1): 9-26. [11] Analysis of the genome sequence of the flowering plant Arabidopsis thaliana[J]. Nature, 2000, 408(6814): 796-815. [12] Yu J, Hu S, et al. A draft sequence of the rice genome(Oryza sativa L. ssp. indica)[J]. Science, 2002, 296(5565): 79-92. [13] Dong J, Chen C, Chen Z. Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response[J]. Plant Mol Biol, 2003, 51(1): 21-37. [14] Tosti N, Pasqualini S, Borgogni A, et al. Gene expression profiles of O3-treated Arabidopsis plants[J]. Plant Cell Environ, 2006, 29(9): 1686-1702. [15] Wang Q, Wang M, Zhang X, et al. WRKY gene family evolution in Arabidopsis thaliana[J]. Genetica, 2011, 139(8): 973-983. [16] Xie Z, Zhang ZL, Zou X, et al. Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells[J]. Plant Physiol, 2005, 137(1): 176-189. [17] Ryu HS, Han M, Lee SK, et al. A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response[J]. Plant Cell Rep, 2006, 25(8): 836-847. [18] Ramamoorthy R, Jiang SY, Kumar N, et al. A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments[J]. Plant Cell Physiol, 2008, 49(6): 865-879. [19] Berri S, Abbruscato P, Faivre-Rampant O, et al. Characterization of WRKY co-regulatory networks in rice and Arabidopsis[J]. BMC Plant Biol, 2009, 9: 120. [20] Nuruzzaman M, Sharoni AM, Satoh K, et al. Comparative transcriptome profiles of the WRKY gene family under control, hormone-treated, and drought conditions in near-isogenic rice lines reveal differential, tissue specific gene activation[J]. J Plant Physiol, 2014, 171(1): 2-13. [21] Mangelsen E, Kilian J, Berendzen KW, et al. Phylogenetic and comparative gene expression analysis of barley(Hordeum vulgare)WRKY transcription factor family reveals putatively retained functions between monocots and dicots[J]. BMC Genomics, 2008, 9: 194. [22] Liu D, Leib K, Zhao P, et al. Phylogenetic analysis of barley WRKY proteins and characterization of HvWRKY1 and -2 as repressors of the pathogen-inducible gene HvGER4c[J]. Mol Genet Genomics, 2014, 289(6): 1331-1345. [23] Wei KF, Chen J, Chen YF, et al. Molecular phylogenetic and expression analysis of the complete WRKY transcription factor family in maize[J]. DNA Res, 2012, 19(2): 153-164. [24] 李修善. 玉米WRKY基因聚类分析[J]. 曲阜师范大学学报, 2012, 38(3): 93-97. [25] Okay S, Derelli E, Unver T. Transcriptome-wide identification of bread wheat WRKY transcription factors in response to drought stress[J]. Mol Genet Genomics, 2014, 289(5): 765-781. [26] Satapathy L, Singh D, Ranjan P, et al. Transcriptome-wide analysis of WRKY transcription factors in wheat and their leaf rust responsive expression profiling[J]. Mol Genet Genomics, 2014, 289(6): 1289-1306. [27] Tripathi P, Rabara RC, Langum TJ, et al. The WRKY transcription factor family in Brachypodium distachyon[J]. BMC Genomics, 2012, 13: 270. [28] Wen F, Zhu H, Li P, et al. Genome-wide evolutionary characteriza-tion and expression analyses of WRKY family genes in Brachypod-ium distachyon[J]. DNA Res, 2014, 21(3): 327-339. [29] Yang B, Jiang Y, Rahman MH, et al. Identification and expression analysis of WRKY transcription factor genes in canola(Brassica napus L. )in response to fungal pathogens and hormone treatments[J]. BMC Plant Biol, 2009, 9: 68. [30] Tang J, Wang F, Wang Z, et al. Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi(Brassica campestris ssp. chinensis)[J]. BMC Plant Biol, 2013, 13: 188. [31] Kayum MA, Jung HJ, Park JI, et al. Identification and expression analysis of WRKY family genes under biotic and abiotic stresses in Brassica rapa[J]. Mol Genet Genomics, 2014. [32] Tang J, Wang F, Hou X, et al. Genome-wide fractionation and identification of WRKY transcription factors in chinese cabbage(Brassica rapa ssp. pekinensis)reveals collinearity and their expression patterns under abiotic and biotic stresses[J]. Plant Molecular Biology Reporter, 2014, 32(4): 781-795. [33] 蒋明, 苗立祥, 张豫超, 等. 大白菜WRKY转录因子的全基因组鉴定与分析[J]. 浙江农业学报, 2013, 25(5): 980-986. [34] Li HL, Zhang LB, Guo D, et al. Identification and expression profiles of the WRKY transcription factor family in Ricinus communis[J]. Gene, 2012, 503(2): 248-253. [35] 邹智. 蓖麻WRKY转录因子的全基因组鉴定及其进化分析[J]. 中国油料作物学报, 2013, 35(1): 36-42. [36] Xiong W, Xu X, Zhang L, et al. Genome-wide analysis of the WRKY gene family in physic nut(Jatropha curcas L. )[J]. Gene, 2013, 524(2): 124-132. [37] Li HL, Guo D, Yang ZP, et al. Genome-wide identification and characterization of WRKY gene family in Hevea brasiliensis[J]. Genomics, 2014, 104(1): 14-23. [38] Ding M, Chen J, Jiang Y, et al. Genome-wide investigation and tran-scriptome analysis of the WRKY gene family in Gossypium[J]. Mol Genet Genomics, 2015, 290(1): 151-171. [39] Dou L, Zhang X, Pang C, et al. Genome-wide analysis of the WRKY gene family in cotton[J]. Mol Genet Genomics, 2014, 289(6): 1103-1121. [40] Huang S, Gao Y, Liu J, et al. Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum[J]. Mol Genet Genomics, 2012, 287(6): 495-513. [41] 黄胜雄, 刘永胜. 土豆WRKY转录因子家族的生物信息学分析[J]. 应用与环境生物学报, 2013, 19(2): 205-214. [42] 许瑞瑞, 张世忠, 曹慧, 等. 苹果WRKY转录因子家族基因生物信息学分析[J]. 园艺学报, 2012, 39(10): 2049-2060. [43] 苗立祥, 张豫超, 等. 森林草莓全基因组WRKY转录因子基因的鉴定与分析[J]. 核农学报, 2012, 26(8): 1124-1131. [44] Ling J, Jiang W, et al. Genome-wide analysis of WRKY gene family in Cucumis sativus[J]. BMC Genomics, 2011, 12: 471. [45] He H, Dong Q, Shao Y, et al. Genome-wide survey and characteriz-ation of the WRKY gene family in Populus trichocarpa[J]. Plant Cell Rep, 2012, 31(7): 1199-1217. [46] Yin G, Xu H, Xiao S, et al. The large soybean(Glycine max)WRKY TF family expanded by segmental duplication events and subsequent divergent selection among subgroups[J]. BMC Plant Biol, 2013, 13: 148. [47] Bencke-Malato M, Cabreira C, Wiebke-Strohm B, et al. Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection[J]. BMC Plant Biol, 2014, 14(1): 236. [48] Pan LJ, Jiang L. Identification and expression of the WRKY transcription factors of Carica papaya in response to abiotic and biotic stresses[J]. Mol Biol Rep, 2014, 41(3): 1215-1225. [49] 李成慧, 蔡斌. 葡萄 WRKY 转录因子家族全基因组分析[J]. 经济林研究, 2013, 31(4): 127-131. [50] Wang L, Zhu W, Fang L, et al. Genome-wide identification of WRKY family genes and their response to cold stress in Vitis vinifera[J]. BMC Plant Biol, 2014, 14: 103. [51] Schluttenhofer C, Pattanaik S, Patra B, et al. Analyses of Catharanthus roseus and Arabidopsis thaliana WRKY transcription factors reveal involvement in jasmonate signaling[J]. BMC Genomics, 2014, 15: 502. [52] 李学鑫, 白志川, 岳欢, 等. 甜橙WRKY转录因子序列的生物信息学分析[J]. 北方园艺, 2013, 2013(1): 119-123. [53] Song A, Li P, Jiang J, et al. Phylogenetic and transcription analysis of chrysanthemum WRKY transcription factors[J]. Int J Mol Sci, 2014, 15(8): 14442-14455. [54] Meerow AW, Noblick L, Borrone JW, et al. Phylogenetic analysis of seven WRKY genes across the palm subtribe Attaleinae(Arecaceae)[corrected]identifies Syagrus as sister group of the coconut[J]. PLoS One, 2009, 4(10): e7353. [55] Wang S, Wang J, Yao W, et al. Expression patterns of WRKY genes in di-haploid Populus simonii×P. nigra in response to salinity stress revealed by quantitative real-time PCR and RNA sequencing[J]. Plant Cell Rep, 2014, 33(10): 1687-1696. [56] Yan DH, Fenning T, Tang S, et al. Genome-wide transcriptional response of Populus euphratica to long-term drought stress[J]. Plant Sci, 2012, 195: 24-35. [57] Huang G, Li T, Li X, et al. Comparative transcriptome analysis of climacteric fruit of chinese pear(Pyrus ussuriensis)reveals new insights into fruit ripening[J]. PLoS One, 2014, 9(9): e107562. |
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