Biotechnology Bulletin ›› 2021, Vol. 37 ›› Issue (8): 65-74.doi: 10.13560/j.cnki.biotech.bull.1985.2021-0173
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LI Qi1(), WANG Yi-chao2, LIU Chang1, TAN He-xin1()
Received:
2021-02-09
Online:
2021-08-26
Published:
2021-09-10
Contact:
TAN He-xin
E-mail:liqi0121@163.com;hexintan@163.com
LI Qi, WANG Yi-chao, LIU Chang, TAN He-xin. Genome-wide Identification and Bioinformatics Analysis of R2R3-MYB Transcription Factors in Artemisia annua[J]. Biotechnology Bulletin, 2021, 37(8): 65-74.
Protein code | MYB name | Protein code | MYB name | Protein code | MYB name |
---|---|---|---|---|---|
PWA71644.1 | AaMYB2R1 | PWA99792.1 | AaMYB2R45 | PWA38419.1 | AaMYB2R89 |
PWA43204.1 | AaMYB2R2 | PWA41205.1 | AaMYB2R46 | PWA56935.1 | AaMYB2R90 |
PWA86000.1 | AaMYB2R3 | PWA96412.1 | AaMYB2R47 | PWA35205.1 | AaMYB2R91 |
PWA65390.1 | AaMYB2R4 | PWA50143.1 | AaMYB2R48 | PWA76413.1 | AaMYB2R92 |
PWA47067.1 | AaMYB2R5 | PWA95387.1 | AaMYB2R49 | PWA61358.1 | AaMYB2R93 |
PWA39356.1 | AaMYB2R6 | PWA87312.1 | AaMYB2R50 | PWA68967.1 | AaMYB2R94 |
PWA75916.1 | AaMYB2R7 | PWA72501.1 | AaMYB2R51 | PWA70735.1 | AaMYB2R95 |
PWA43649.1 | AaMYB2R8 | PWA88612.1 | AaMYB2R52 | PWA65469.1 | AaMYB2R96 |
PWA51649.1 | AaMYB2R9 | PWA71899.1 | AaMYB2R53 | PWA73667.1 | AaMYB2R97 |
PWA64888.1 | AaMYB2R10 | PWA60948.1 | AaMYB2R54 | PWA60339.1 | AaMYB2R98 |
PWA67214.1 | AaMYB2R11 | PWA66225.1 | AaMYB2R55 | PWA47768.1 | AaMYB2R99 |
PWA89491.1 | AaMYB2R12 | PWA35659.1 | AaMYB2R56 | PWA65296.1 | AaMYB2R100 |
PWA46461.1 | AaMYB2R13 | PWA98977.1 | AaMYB2R57 | PWA93717.1 | AaMYB2R101 |
PWA78544.1 | AaMYB2R14 | PWA87993.1 | AaMYB2R58 | PWA99549.1 | AaMYB2R102 |
PWA71245.1 | AaMYB2R15 | PWA63153.1 | AaMYB2R59 | PWA44719.1 | AaMYB2R103 |
PWA96367.1 | AaMYB2R16 | PWA70731.1 | AaMYB2R60 | PWA74420.1 | AaMYB2R104 |
PWA52706.1 | AaMYB2R17 | PWA90922.1 | AaMYB2R61 | PWA74110.1 | AaMYB2R105 |
PWA64358.1 | AaMYB2R18 | PWA56311.1 | AaMYB2R62 | PWA66731.1 | AaMYB2R106 |
PWA52104.1 | AaMYB2R19 | PWA81663.1 | AaMYB2R63 | PWA46401.1 | AaMYB2R107 |
PWA34289.1 | AaMYB2R20 | PWA75167.1 | AaMYB2R64 | PWA60446.1 | AaMYB2R108 |
PWA45135.1 | AaMYB2R21 | PWA64917.1 | AaMYB2R65 | PWA50364.1 | AaMYB2R109 |
PWA46713.1 | AaMYB2R22 | PWA54615.1 | AaMYB2R66 | PWA81967.1 | AaMYB2R110 |
PWA60682.1 | AaMYB2R23 | PWA50450.1 | AaMYB2R67 | PWA55616.1 | AaMYB2R111 |
PWA52704.1 | AaMYB2R24 | PWA55247.1 | AaMYB2R68 | PWA39801.1 | AaMYB2R112 |
PWA86815.1 | AaMYB2R25 | PWA78936.1 | AaMYB2R69 | PWA65860.1 | AaMYB2R113 |
PWA52975.1 | AaMYB2R26 | PWA48003.1 | AaMYB2R70 | PWA93789.1 | AaMYB2R114 |
PWA84715.1 | AaMYB2R27 | PWA84612.1 | AaMYB2R71 | PWA70975.1 | AaMYB2R115 |
PWA47058.1 | AaMYB2R28 | PWA98963.1 | AaMYB2R72 | PWA63331.1 | AaMYB2R116 |
PWA48985.1 | AaMYB2R29 | PWA85713.1 | AaMYB2R73 | PWA37853.1 | AaMYB2R117 |
PWA71307.1 | AaMYB2R30 | PWA67086.1 | AaMYB2R74 | PWA78715.1 | AaMYB2R118 |
PWA66224.1 | AaMYB2R31 | PWA47522.1 | AaMYB2R75 | PWA87301.1 | AaMYB2R119 |
PWA66489.1 | AaMYB2R32 | PWA96303.1 | AaMYB2R76 | PWA62998.1 | AaMYB2R120 |
PWA88884.1 | AaMYB2R33 | PWA74168.1 | AaMYB2R77 | PWA94056.1 | AaMYB2R121 |
PWA60694.1 | AaMYB2R34 | PWA80451.1 | AaMYB2R78 | PWA35582.1 | AaMYB2R122 |
PWA96157.1 | AaMYB2R35 | PWA60300.1 | AaMYB2R79 | PWA92852.1 | AaMYB2R123 |
PWA60193.1 | AaMYB2R36 | PWA72588.1 | AaMYB2R80 | PWA56697.1 | AaMYB2R124 |
PWA89756.1 | AaMYB2R37 | PWA60276.1 | AaMYB2R81 | PWA93922.1 | AaMYB2R125 |
PWA89743.1 | AaMYB2R38 | PWA77673.1 | AaMYB2R82 | PWA82717.1 | AaMYB2R126 |
PWA59700.1 | AaMYB2R39 | PWA70733.1 | AaMYB2R83 | PWA38555.1 | AaMYB2R127 |
PWA72169.1 | AaMYB2R40 | PWA56370.1 | AaMYB2R84 | PWA43034.1 | AaMYB2R128 |
PWA34017.1 | AaMYB2R41 | PWA50987.1 | AaMYB2R85 | PWA70165.1 | AaMYB2R129 |
PWA87210.1 | AaMYB2R42 | PWA88000.1 | AaMYB2R86 | PWA95682.1 | AaMYB2R130 |
PWA71841.1 | AaMYB2R43 | PWA85391.1 | AaMYB2R87 | PWA89358.1 | AaMYB2R131 |
PWA79178.1 | AaMYB2R44 | PWA71534.1 | AaMYB2R88 | PWA90842.1 | AaMYB2R132 |
Table 1 Screening result of R2R3-MYB transcription factors in A. annua
Protein code | MYB name | Protein code | MYB name | Protein code | MYB name |
---|---|---|---|---|---|
PWA71644.1 | AaMYB2R1 | PWA99792.1 | AaMYB2R45 | PWA38419.1 | AaMYB2R89 |
PWA43204.1 | AaMYB2R2 | PWA41205.1 | AaMYB2R46 | PWA56935.1 | AaMYB2R90 |
PWA86000.1 | AaMYB2R3 | PWA96412.1 | AaMYB2R47 | PWA35205.1 | AaMYB2R91 |
PWA65390.1 | AaMYB2R4 | PWA50143.1 | AaMYB2R48 | PWA76413.1 | AaMYB2R92 |
PWA47067.1 | AaMYB2R5 | PWA95387.1 | AaMYB2R49 | PWA61358.1 | AaMYB2R93 |
PWA39356.1 | AaMYB2R6 | PWA87312.1 | AaMYB2R50 | PWA68967.1 | AaMYB2R94 |
PWA75916.1 | AaMYB2R7 | PWA72501.1 | AaMYB2R51 | PWA70735.1 | AaMYB2R95 |
PWA43649.1 | AaMYB2R8 | PWA88612.1 | AaMYB2R52 | PWA65469.1 | AaMYB2R96 |
PWA51649.1 | AaMYB2R9 | PWA71899.1 | AaMYB2R53 | PWA73667.1 | AaMYB2R97 |
PWA64888.1 | AaMYB2R10 | PWA60948.1 | AaMYB2R54 | PWA60339.1 | AaMYB2R98 |
PWA67214.1 | AaMYB2R11 | PWA66225.1 | AaMYB2R55 | PWA47768.1 | AaMYB2R99 |
PWA89491.1 | AaMYB2R12 | PWA35659.1 | AaMYB2R56 | PWA65296.1 | AaMYB2R100 |
PWA46461.1 | AaMYB2R13 | PWA98977.1 | AaMYB2R57 | PWA93717.1 | AaMYB2R101 |
PWA78544.1 | AaMYB2R14 | PWA87993.1 | AaMYB2R58 | PWA99549.1 | AaMYB2R102 |
PWA71245.1 | AaMYB2R15 | PWA63153.1 | AaMYB2R59 | PWA44719.1 | AaMYB2R103 |
PWA96367.1 | AaMYB2R16 | PWA70731.1 | AaMYB2R60 | PWA74420.1 | AaMYB2R104 |
PWA52706.1 | AaMYB2R17 | PWA90922.1 | AaMYB2R61 | PWA74110.1 | AaMYB2R105 |
PWA64358.1 | AaMYB2R18 | PWA56311.1 | AaMYB2R62 | PWA66731.1 | AaMYB2R106 |
PWA52104.1 | AaMYB2R19 | PWA81663.1 | AaMYB2R63 | PWA46401.1 | AaMYB2R107 |
PWA34289.1 | AaMYB2R20 | PWA75167.1 | AaMYB2R64 | PWA60446.1 | AaMYB2R108 |
PWA45135.1 | AaMYB2R21 | PWA64917.1 | AaMYB2R65 | PWA50364.1 | AaMYB2R109 |
PWA46713.1 | AaMYB2R22 | PWA54615.1 | AaMYB2R66 | PWA81967.1 | AaMYB2R110 |
PWA60682.1 | AaMYB2R23 | PWA50450.1 | AaMYB2R67 | PWA55616.1 | AaMYB2R111 |
PWA52704.1 | AaMYB2R24 | PWA55247.1 | AaMYB2R68 | PWA39801.1 | AaMYB2R112 |
PWA86815.1 | AaMYB2R25 | PWA78936.1 | AaMYB2R69 | PWA65860.1 | AaMYB2R113 |
PWA52975.1 | AaMYB2R26 | PWA48003.1 | AaMYB2R70 | PWA93789.1 | AaMYB2R114 |
PWA84715.1 | AaMYB2R27 | PWA84612.1 | AaMYB2R71 | PWA70975.1 | AaMYB2R115 |
PWA47058.1 | AaMYB2R28 | PWA98963.1 | AaMYB2R72 | PWA63331.1 | AaMYB2R116 |
PWA48985.1 | AaMYB2R29 | PWA85713.1 | AaMYB2R73 | PWA37853.1 | AaMYB2R117 |
PWA71307.1 | AaMYB2R30 | PWA67086.1 | AaMYB2R74 | PWA78715.1 | AaMYB2R118 |
PWA66224.1 | AaMYB2R31 | PWA47522.1 | AaMYB2R75 | PWA87301.1 | AaMYB2R119 |
PWA66489.1 | AaMYB2R32 | PWA96303.1 | AaMYB2R76 | PWA62998.1 | AaMYB2R120 |
PWA88884.1 | AaMYB2R33 | PWA74168.1 | AaMYB2R77 | PWA94056.1 | AaMYB2R121 |
PWA60694.1 | AaMYB2R34 | PWA80451.1 | AaMYB2R78 | PWA35582.1 | AaMYB2R122 |
PWA96157.1 | AaMYB2R35 | PWA60300.1 | AaMYB2R79 | PWA92852.1 | AaMYB2R123 |
PWA60193.1 | AaMYB2R36 | PWA72588.1 | AaMYB2R80 | PWA56697.1 | AaMYB2R124 |
PWA89756.1 | AaMYB2R37 | PWA60276.1 | AaMYB2R81 | PWA93922.1 | AaMYB2R125 |
PWA89743.1 | AaMYB2R38 | PWA77673.1 | AaMYB2R82 | PWA82717.1 | AaMYB2R126 |
PWA59700.1 | AaMYB2R39 | PWA70733.1 | AaMYB2R83 | PWA38555.1 | AaMYB2R127 |
PWA72169.1 | AaMYB2R40 | PWA56370.1 | AaMYB2R84 | PWA43034.1 | AaMYB2R128 |
PWA34017.1 | AaMYB2R41 | PWA50987.1 | AaMYB2R85 | PWA70165.1 | AaMYB2R129 |
PWA87210.1 | AaMYB2R42 | PWA88000.1 | AaMYB2R86 | PWA95682.1 | AaMYB2R130 |
PWA71841.1 | AaMYB2R43 | PWA85391.1 | AaMYB2R87 | PWA89358.1 | AaMYB2R131 |
PWA79178.1 | AaMYB2R44 | PWA71534.1 | AaMYB2R88 | PWA90842.1 | AaMYB2R132 |
Fig.1 Conserved domain analysis result of R2R3-MYB transcription factors in A. annua A:Analysis result of R2 domain by Weblogo. B:Analysis result of R3 domain. C:Predicted structure of R2 domain by Swiss-Model.D:Predicted structure of R3 domain by Swiss-Model
Motif | Top scoring sequence | E-value | Site |
---|---|---|---|
1 | AGLQRCGKSCRLRWTNYLRPDJKRGNFTEEEEELIJQLHALLGNRWSAIA | 1.3e-4561 | 125 |
2 | HLPGRTDNEIKNYWNTHLKKK | 1.3e-1932 | 126 |
3 | KKGPWTPEEDQKLINYIZKHGHGN | 3.0e-1621 | 127 |
4 | MGRAPCCDKNG | 8.1e-356 | 60 |
5 | LLKMGIDPVTHKPK | 2.80E-228 | 37 |
6 | TNLSHMAQWENARLEAEARLVRQSRVVS | 6.00E-132 | 12 |
7 | WRSLPK | 3.00E-129 | 110 |
8 | INKSSVSSLLVPQPLCFDVLKAWQGJTLSKLSSL | 7.90E-35 | 5 |
9 | TMSKGQWERRLQTDIHMAKQALCDALSIDNKSI | 2.00E-32 | 4 |
10 | LDLSDLSSJLNSAIENLSNLLNLQSLVNP | 1.10E-30 | 7 |
11 | EFVDVMQEMIAKEVRNYI | 2.70E-29 | 7 |
12 | QLKCDVNSKQFKDTMRYLWMPRLLEKIZA | 4.40E-28 | 5 |
13 | SDLTDCYYPISESQNQNFLQINNTVGDEFDCPIISPTIYFNREMDFEGQM | 2.60E-27 | 3 |
14 | PLGLVNDLISQASCQDMIMDDDLLWSTJD | 2.80E-25 | 8 |
15 | NVVESVEPQTLKGMSTEYHMN | 9.10E-19 | 4 |
16 | KEEATQHTLEVNDMIYQDNYLAEAFTNHLVNDANCHGHLED | 6.80E-22 | 4 |
17 | YASSAENIARLLPNWMKSSSKSSQTSS | 8.70E-17 | 5 |
18 | PPSSYEPAGNFWTEPFLVDN | 5.90E-16 | 10 |
19 | FNSWDECATWLLDCQDFGIHDFGLDCFGZVEM | 1.50E-09 | 2 |
20 | KQKLGTKDSEPLQQHAKVSVIKPQPQTFSRIQNC | 6.40E-10 | 3 |
21 | DSIFSTPISSPTPLNSSSTLINSSSTEDERESYC | 2.20E-09 | 4 |
22 | TMWPCKLNPIQEKJMQNLQLLNESSNPLMMQHFSPSTPQKIEYY | 2.40E-19 | 3 |
23 | CSSMTNEEFNDFAVQQPLLKRSVSDGSGVP | 9.70E-13 | 3 |
24 | PGTIDDLQYFWDQLCPVENLELRNNHLD | 1.00E-07 | 3 |
25 | MAQDVARWWDTVSEDGLWGGFLWNQENDHPNKQAIEQSFSPCF | 1.30E-07 | 2 |
26 | EIEGFKDMDGAKDDMTWWSBEFDANSASSNSWDSBGVLDH | 1.10E-06 | 3 |
27 | TDDGVNNALDIPQGLISSPIESGDKIDEYLDELFNDEENEFEGEIDWTLD | 2.00E-06 | 2 |
28 | NHFNEDIDGKIKVEEVVGFENHWPGENFKIGEWDFEGFLANIPSJPYLDF | 2.10E-06 | 2 |
29 | FKFEIPESLEFDDFM | 5.70E-06 | 6 |
30 | DYFLRVWHSEVGESFR | 7.50E-05 | 4 |
31 | SSSETSSSSLSGSDYVVPSDV | 1.70E-04 | 7 |
32 | KRRVGRVSRRVAKKYNKDRV | 2.40E-04 | 3 |
33 | GMFMSMHDHDJMAICME | 2.90E-04 | 2 |
34 | FTKRKCRSKWPKPSPILQNYIKSLNLPRG | 4.80E-04 | 2 |
35 | ELQQFLAFQAEIDEFLS | 3.00E-05 | 3 |
36 | PFIDFLGVG | 4.90E-05 | 5 |
37 | VSVNDPPTSLSLSLPGV | 4.90E-04 | 7 |
38 | DSSDTQLQLFFDFPGPNDANF | 6.30E-04 | 4 |
39 | SGGEEDDQMNMMMD | 1.60E-03 | 4 |
40 | AAQVNKLPKILFADWLSLDEFH | 1.70E-03 | 3 |
41 | DSNYWSNILDKLGN | 3.50E-03 | 4 |
42 | YTRDNSSNTAVSPV | 1.30E-02 | 3 |
43 | WNMDDLWQFR | 4.20E-02 | 4 |
44 | FHLPDEVMWDF | 9.90E-02 | 3 |
45 | YDHGHHHHHHN | 4.50E-02 | 3 |
Table 2 Domain search result of R2R3-MYB transcription factors in Artemisia annua by MEME
Motif | Top scoring sequence | E-value | Site |
---|---|---|---|
1 | AGLQRCGKSCRLRWTNYLRPDJKRGNFTEEEEELIJQLHALLGNRWSAIA | 1.3e-4561 | 125 |
2 | HLPGRTDNEIKNYWNTHLKKK | 1.3e-1932 | 126 |
3 | KKGPWTPEEDQKLINYIZKHGHGN | 3.0e-1621 | 127 |
4 | MGRAPCCDKNG | 8.1e-356 | 60 |
5 | LLKMGIDPVTHKPK | 2.80E-228 | 37 |
6 | TNLSHMAQWENARLEAEARLVRQSRVVS | 6.00E-132 | 12 |
7 | WRSLPK | 3.00E-129 | 110 |
8 | INKSSVSSLLVPQPLCFDVLKAWQGJTLSKLSSL | 7.90E-35 | 5 |
9 | TMSKGQWERRLQTDIHMAKQALCDALSIDNKSI | 2.00E-32 | 4 |
10 | LDLSDLSSJLNSAIENLSNLLNLQSLVNP | 1.10E-30 | 7 |
11 | EFVDVMQEMIAKEVRNYI | 2.70E-29 | 7 |
12 | QLKCDVNSKQFKDTMRYLWMPRLLEKIZA | 4.40E-28 | 5 |
13 | SDLTDCYYPISESQNQNFLQINNTVGDEFDCPIISPTIYFNREMDFEGQM | 2.60E-27 | 3 |
14 | PLGLVNDLISQASCQDMIMDDDLLWSTJD | 2.80E-25 | 8 |
15 | NVVESVEPQTLKGMSTEYHMN | 9.10E-19 | 4 |
16 | KEEATQHTLEVNDMIYQDNYLAEAFTNHLVNDANCHGHLED | 6.80E-22 | 4 |
17 | YASSAENIARLLPNWMKSSSKSSQTSS | 8.70E-17 | 5 |
18 | PPSSYEPAGNFWTEPFLVDN | 5.90E-16 | 10 |
19 | FNSWDECATWLLDCQDFGIHDFGLDCFGZVEM | 1.50E-09 | 2 |
20 | KQKLGTKDSEPLQQHAKVSVIKPQPQTFSRIQNC | 6.40E-10 | 3 |
21 | DSIFSTPISSPTPLNSSSTLINSSSTEDERESYC | 2.20E-09 | 4 |
22 | TMWPCKLNPIQEKJMQNLQLLNESSNPLMMQHFSPSTPQKIEYY | 2.40E-19 | 3 |
23 | CSSMTNEEFNDFAVQQPLLKRSVSDGSGVP | 9.70E-13 | 3 |
24 | PGTIDDLQYFWDQLCPVENLELRNNHLD | 1.00E-07 | 3 |
25 | MAQDVARWWDTVSEDGLWGGFLWNQENDHPNKQAIEQSFSPCF | 1.30E-07 | 2 |
26 | EIEGFKDMDGAKDDMTWWSBEFDANSASSNSWDSBGVLDH | 1.10E-06 | 3 |
27 | TDDGVNNALDIPQGLISSPIESGDKIDEYLDELFNDEENEFEGEIDWTLD | 2.00E-06 | 2 |
28 | NHFNEDIDGKIKVEEVVGFENHWPGENFKIGEWDFEGFLANIPSJPYLDF | 2.10E-06 | 2 |
29 | FKFEIPESLEFDDFM | 5.70E-06 | 6 |
30 | DYFLRVWHSEVGESFR | 7.50E-05 | 4 |
31 | SSSETSSSSLSGSDYVVPSDV | 1.70E-04 | 7 |
32 | KRRVGRVSRRVAKKYNKDRV | 2.40E-04 | 3 |
33 | GMFMSMHDHDJMAICME | 2.90E-04 | 2 |
34 | FTKRKCRSKWPKPSPILQNYIKSLNLPRG | 4.80E-04 | 2 |
35 | ELQQFLAFQAEIDEFLS | 3.00E-05 | 3 |
36 | PFIDFLGVG | 4.90E-05 | 5 |
37 | VSVNDPPTSLSLSLPGV | 4.90E-04 | 7 |
38 | DSSDTQLQLFFDFPGPNDANF | 6.30E-04 | 4 |
39 | SGGEEDDQMNMMMD | 1.60E-03 | 4 |
40 | AAQVNKLPKILFADWLSLDEFH | 1.70E-03 | 3 |
41 | DSNYWSNILDKLGN | 3.50E-03 | 4 |
42 | YTRDNSSNTAVSPV | 1.30E-02 | 3 |
43 | WNMDDLWQFR | 4.20E-02 | 4 |
44 | FHLPDEVMWDF | 9.90E-02 | 3 |
45 | YDHGHHHHHHN | 4.50E-02 | 3 |
Fig.2 Phylogenetic tree of R2R3-MYB transcription factors in A. annua and Arabidopsis thaliana ○ Sequence of A. annua,● Sequence of Arabidopsis thaliana
GO term | Ontology | Description | Gene number |
---|---|---|---|
GO:0005634 | C | Nucleus | 128 |
GO:0043565 | F | Sequence-specific DNA binding | 95 |
GO:0044212 | F | Transcription regulatory region DNA binding | 84 |
GO:0003700 | F | DNA-binding transcription factor activity | 83 |
GO:0030154 | P | Cell differentiation | 80 |
GO:0006355 | P | Regulation of transcription,DNA-templated | 67 |
GO:0003677 | F | DNA binding | 36 |
GO:0009733 | P | Response to auxin | 4 |
GO:0010119 | P | Regulation of stomatal movement | 3 |
GO:0009751 | P | Response to salicylic acid | 2 |
GO:0048658 | P | Anther wall tapetum development | 2 |
GO:0005515 | F | Protein binding | 1 |
GO:0005524 | F | ATP binding | 1 |
GO:0016021 | C | Integral component of membrane | 1 |
GO:0009739 | P | Response to gibberellin | 1 |
GO:0009753 | P | Response to jasmonic acid | 1 |
GO:0048481 | P | Plant ovule development | 1 |
GO:0090377 | P | Seed trichome initiation | 1 |
GO:0004222 | F | Metalloendopeptidase activity | 1 |
GO:0006508 | P | Proteolysis | 1 |
GO:0003824 | F | Catalytic activity | 1 |
GO:0001101 | P | Response to acid chemical | 1 |
GO:1901700 | P | Response to oxygen-containing compound | 1 |
GO:0052545 | P | Callose localization | 1 |
GO:0055046 | P | Microgametogenesis | 1 |
GO:0050789 | P | Regulation of biological process | 1 |
GO:0010090 | P | Trichome morphogenesis | 1 |
GO:0048354 | P | Mucilage biosynthetic process involved in seed coat development | 1 |
GO:0048522 | P | Positive regulation of cellular process | 1 |
GO:0048523 | P | Negative regulation of cellular process | 1 |
GO:0050793 | P | Regulation of developmental process | 1 |
GO:0044839 | P | Cell cycle G2/M phase transition | 1 |
GO:0045893 | P | Positive regulation of transcription,DNA-templated | 1 |
GO:0048235 | P | Pollen sperm cell differentiation | 1 |
GO:0048555 | C | Generative cell nucleus | 1 |
GO:0055047 | P | Generative cell mitosis | 1 |
Table 3 GO annotation count result of R2R3-MYB transcription factors in A. annua
GO term | Ontology | Description | Gene number |
---|---|---|---|
GO:0005634 | C | Nucleus | 128 |
GO:0043565 | F | Sequence-specific DNA binding | 95 |
GO:0044212 | F | Transcription regulatory region DNA binding | 84 |
GO:0003700 | F | DNA-binding transcription factor activity | 83 |
GO:0030154 | P | Cell differentiation | 80 |
GO:0006355 | P | Regulation of transcription,DNA-templated | 67 |
GO:0003677 | F | DNA binding | 36 |
GO:0009733 | P | Response to auxin | 4 |
GO:0010119 | P | Regulation of stomatal movement | 3 |
GO:0009751 | P | Response to salicylic acid | 2 |
GO:0048658 | P | Anther wall tapetum development | 2 |
GO:0005515 | F | Protein binding | 1 |
GO:0005524 | F | ATP binding | 1 |
GO:0016021 | C | Integral component of membrane | 1 |
GO:0009739 | P | Response to gibberellin | 1 |
GO:0009753 | P | Response to jasmonic acid | 1 |
GO:0048481 | P | Plant ovule development | 1 |
GO:0090377 | P | Seed trichome initiation | 1 |
GO:0004222 | F | Metalloendopeptidase activity | 1 |
GO:0006508 | P | Proteolysis | 1 |
GO:0003824 | F | Catalytic activity | 1 |
GO:0001101 | P | Response to acid chemical | 1 |
GO:1901700 | P | Response to oxygen-containing compound | 1 |
GO:0052545 | P | Callose localization | 1 |
GO:0055046 | P | Microgametogenesis | 1 |
GO:0050789 | P | Regulation of biological process | 1 |
GO:0010090 | P | Trichome morphogenesis | 1 |
GO:0048354 | P | Mucilage biosynthetic process involved in seed coat development | 1 |
GO:0048522 | P | Positive regulation of cellular process | 1 |
GO:0048523 | P | Negative regulation of cellular process | 1 |
GO:0050793 | P | Regulation of developmental process | 1 |
GO:0044839 | P | Cell cycle G2/M phase transition | 1 |
GO:0045893 | P | Positive regulation of transcription,DNA-templated | 1 |
GO:0048235 | P | Pollen sperm cell differentiation | 1 |
GO:0048555 | C | Generative cell nucleus | 1 |
GO:0055047 | P | Generative cell mitosis | 1 |
Fig.3 Expression pattern clustering of artemisinin specific synthesis pathway genes and parts of R2R3-MYB genes in A. annua A:Analysis result of expression pattern according to transcriptome data of PRJNA416223. B:Analysis result of expression pattern according to transcriptome data of PRJNA39657
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