Biotechnology Bulletin ›› 2016, Vol. 32 ›› Issue (4): 16-23.doi: 10.13560/j.cnki.biotech.bull.1985.2016.04.002
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ZHAO Qian, WANG Wei ,SUN Ye-qing
Received:
2015-08-08
Online:
2016-04-25
Published:
2016-04-26
ZHAO Qian, WANG Wei ,SUN Ye-qing. Review on the Correlation between DNA Methylation and Gene Expression in Plant[J]. Biotechnology Bulletin, 2016, 32(4): 16-23.
[1]Waddington CH. Canalization of development and the inheritance of acquired characters[J]. Nature, 1942, 150(3811):563-565. [2]Kumar S, Kumari R, Sharma V, et al. Roles, and establishment, maintenance and erasing of the epigenetic cytosine methylation marks in plants[J]. Journal of genetics, 2013, 92(3):629-666. [3]Bird A. DNA methylation patterns and epigenetic memory[J]. Genes Dev, 2002, 16(1):6-21. [4]Zilberman D, Gehring M, Tran RK, et al. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription[J]. Nat Genet, 2007, 39(1):61-69. [5]Vanyushin BF, Ashapkin VV. DNA methylation in higher plants:past, present and future[J]. Biochim Biophys Acta, 2011, 1809(8):360-368. [6]Saze H, Tsugane K, Kanno T, et al. DNA methylation in plants:relationship to small RNAs and histone modifications, and functions in transposon inactivation[J]. Plant Cell Physiol, 2012, 53(5):766-784. [7]Mahfouz MM. RNA-directed DNA methylation:mechanisms and functions[J]. Plant Signaling & Behavior, 2010, 5(7):806-816. [8]Matzke MA, Birchler JA. RNAi-mediated pathways in the nucleus[J]. Nat Rev Genet, 2005, 6(1):24-35. [9]Finnegan E, Kovac K. Plant DNA methyltransferases[J]. Plant Molecular Biology, 2000, 43(2-3):189-201. [10]Feng S, Cokus SJ, Zhang X, et al. Conservation and divergence of methylation patterning in plants and animals[J]. Proc Natl Acad Sci USA, 2010, 107(19):8689-8694. [11] Zhong S, Fei Z, Chen YR, et al. Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening[J]. Nat Biotechnol, 2013, 31(2):154-159. [12]Conde D, González-Melendi P, Allona I. Poplar stems show opposite epigenetic patterns during winter dormancy and vegetative growth[J]. Trees, 2012, 27(1):311-320. [13]Lister R, Pelizzola M, Dowen RH, et al. Human DNA methylomes at base resolution show widespread epigenomic differences[J]. Nature, 2009, 462(7271):315-322. [14]Laurent L, Wong E, Li G, et al. Dynamic changes in the human methylome during differentiation[J]. Genome Res, 2010, 20(3):320-331. [15]Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals[J]. Nat Rev Genet, 2010, 11(3):204-220. [16]Zemach A, McDaniel IE, Silva P, et al. Genome-wide evolutionary analysis of eukaryotic DNA methylation[J]. Science, 2010, 328(5980):916-919. [17]Akimoto K, Katakami H, Kim HJ, et al. Epigenetic inheritance in rice plants[J]. Ann Bot, 2007, 100(2):205-217. [18]Boyko A, Kovalchuk I. Genome instability and epigenetic modification--heritable responses to environmental stress?[J]. Curr Opin Plant Biol, 2011, 14(3):260-266. [19]Reik W, Dean W, Walter J. Epigenetic reprogramming in mammalian development[J]. Science, 2001, 293(5532):1089-1093. [20]史金铭. 空间和重离子辐射环境的诱变效应与DNA甲基化变化的关联[D]:哈尔滨:哈尔滨工业大学, 2010. [21]Attwood J, Yung R, Richardson B. DNA methylation and the regulation of gene transcription[J]. Cellular and Molecular Life Sciences CMLS, 2002, 59(2):241-257. [22]Goren A, Simchen G, Fibach E, et al. Fine tuning of globin gene expression by DNA methylation[J]. PLoS One, 2006, 1(1):e46. [23]Das PM, Singal R. DNA methylation and cancer[J]. J Clin Oncol, 2004, 22(22):4632-4642. [24]Tariq M, Paszkowski J. DNA and histone methylation in plants[J]. Trends Genet, 2004, 20(6):244-251. [25]Steward N, Ito M, Yamaguchi Y, et al. Periodic DNA methylation in maize nucleosomes and demethylation by environmental stress[J]. J Biol Chem, 2002, 277(40):37741-37746. [26]Choi CS, Sano H. Abiotic-stress induces demethylation and transcr-iptional activation of a gene encoding a glycerophosphodiesterase-like protein in tobacco plants[J]. Mol Genet Genomics, 2007, 277(5):589-600. [27]华扬, 陈学峰, 熊建华, 等. 水稻冷胁迫诱导的甲基化差异片段 CIDM7 的分离和分析[J]. 遗传, 2005, 27(4):595-600. [28]Naydenov M, Baev V, Apostolova E, et al. High-temperature effect on genes engaged in DNA methylation and affected by DNA methylation in Arabidopsis[J]. Plant Physiol Biochem, 2015, 87102-87108. [29] Finnegan EJ, Genger RK, Peacock WJ, et al. DNA methylation in plants[J]. Annual Review of Plant Biology, 1998, 49(1):223-247. [30]Takeno K. Epigenetic regulation of photoperiodic flowering[J]. Plant Signaling & Behavior, 2014, 5(7):788-791. [31]Dowen RH, Pelizzola M, Schmitz RJ, et al. Widespread dynamic DNA methylation in response to biotic stress[J]. Proc Natl Acad Sci USA, 2012, 109(32):E2183-E2191. [32]Yi H, Li L. DNA methylation changes in response to sulfur dioxide stress in Arabidopsis plants[J]. Procedia Environmental Sciences, 2013, 1837-42. [33]李利红, 仪慧兰, 王艺雯, 等. 二氧化硫胁迫诱导拟南芥NIT2基因DNA甲基化修饰[J]. 农业环境科学学报, 2012(4):685-690. [34]Li XL, Lin ZX, Nie YC, Zhang XL. MSAP analysis of epigenetic changes in cotton(Gossypium hirsutum L. )under salt stress[J]. Acta Agronomica Sinica, 2009, 35(4):588-596. [35]曹聪. 水稻早期盐胁迫生长调控中的DNA甲基化研究[D]. 北京:中国农业大学, 2014. [36]Ding H, Gao J, Qin C, et al. The dynamics of DNA methylation in maize roots under Pb stress[J]. Int J Mol Sci, 2014, 15(12):23537-23554. [37]Wada Y, Miyamoto K, Kusano T, et al. Association between up-regulation of stress-responsive genes and hypomethylation of genomic DNA in tobacco plants[J]. Mol Genet Genomics, 2004, 271(6):658-666. [38]王连嵋. 空间环境引起水稻DNA甲基化与蛋白质组变化及其关联分析[D]. 哈尔滨:哈尔滨工业大学, 2007. [39]Grativol C, Hemerly AS, Ferreira PC. Genetic and epigenetic regulation of stress responses in natural plant populations[J]. Biochim Biophys Acta, 2012, 1819(2):176-185. [40]Schmitz RJ, Zhang X. High-throughput approaches for plant epigenomic studies[J]. Curr Opin Plant Biol, 2011, 14(2):130-136. [41]Stirzaker C, Taberlay PC, Statham AL, et al. Mining cancer methylomes:prospects and challenges[J]. Trends Genet, 2014, 30(2):75-84. [42]Moreno-Risueno MA, Busch W, Benfey PN. Omics meet networks - using systems approaches to infer regulatory networks in plants[J]. Curr Opin Plant Biol, 2010, 13(2):126-131. [43]Zhang X, Yazaki J, Sundaresan A, et al. Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis[J]. Cell, 2006, 126(6):1189-1201. [44]Li X, Zhu J, Hu F, et al. Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression[J]. BMC Genomics, 2012, 13:300. [45]Liang D, Zhang Z, Wu H, et al. Single-base-resolution methylomes of Populus trichocarpa reveal the association between DNA methylation and drought stress[J]. BMC Genet, 2014, 15(Suppl1)1S9. [46]Song QX, Lu X, Li QT, et al. Genome-wide analysis of DNA methylation in soybean[J]. Mol Plant, 2013, 6(6):1961-1974. [47]解少俊. 玉米表观遗传组的研究[D]. 北京:中国农业大学, 2014. [48]Eichten SR, Briskine R, Song J, et al. Epigenetic and genetic influ-ences on DNA methylation variation in maize populations[J]. Plant Cell, 2013, 25(8):2783-2797. [49]Karan R, DeLeon T, Biradar H, et al. Salt stress induced variation in DNA methylation pattern and its influence on gene expression in contrasting rice genotypes[J]. PLoS One, 2012, 7(6):e40203. [50]Gutzat R, Mittelsten Scheid O. Epigenetic responses to stress:triple defense?[J]. Curr Opin Plant Biol, 2012, 15(5):568-573. |
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