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    25 April 2016, Volume 32 Issue 4
    Research Progress on Cytoplasmic Male Sterility and Its Restorer of Fertility in Pepper
    WEI Bing-qiang,ZHANG Miao,WANG Lan-lan, CHEN Ling-zhi, ZHANG Ru, HOU Dong,ZHANG Jian-nong
    2016, 32(4):  1-5.  doi:10.13560/j.cnki.biotech.bull.1985.2016.03.001
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    It is the major way to produce hybrid seeds by cytoplasmic male sterile line because it does not need manual emasculation,thus not only the cost of breeding is reduced,but also the purity of hybrid seeds is ensured. In this paper,the developing period of male sterility,the differences of energies,substances and hormones between male sterile line and its maintaining line are reviewed. The mechanisms of male sterility and its restorer are summarized from the aspects of genetic analysis,quantitative trait loci and molecular biology.

    The Potential Application of microRNA-mediated Gene Regulation in Crop Improvement
    LIU Wei-can ,ZHOU Yong-gang, WANG Xing-chao, WANG Fa-wei, WANG Nan, DONG Yuan-yuan, LI Xiao-wei, LI Hai-yan
    2016, 32(4):  6-15.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.001
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    Plant microRNAs(miRNAs)are small RNAs of approximate 22 nt,endogenous,single-strand,and non-coding. They play regulatory roles at post-transcription level by inhibiting translation or promoting the degradation of target mRNAs. With the advances in high-throughput sequencing technology and a variety of research techniques,more and more microRNAs have been predicted and validated,which provide a rich candidate gene resources for crop improvement through genetic engineering. This review highlights the recent advances in studies of biotic stress,abiotic stress,as well as plant growth and development,and then analyzes the potential of miRNA-mediated gene regulation for crop improvement. In addition,several transgenic technologies for genetically modified crops in plant genetic engineering with miRNA-based gene regulation are introduced,including RNAi of target gene,artificial miRNAs(amiRNAs),target mimics(TM)and over-expressing miRNA-resistant targets. Also the potential risks and challenges of miRNA-based genetic modification technology are discussed.
    Review on the Correlation between DNA Methylation and Gene Expression in Plant
    ZHAO Qian, WANG Wei ,SUN Ye-qing
    2016, 32(4):  16-23.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.002
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    DNA methylation is one of the most important modification of eukaryotic genomes. This article reviews the patterns,establishment and maintaining mechanisms of plant DNA methylation,while focusing on the explanation of affecting mechanism of plant DNA methylation on gene expression and regulation. This article summarizes the effects on gene expression caused by the changes of DNA methylation in plant under adversity stress,and the correlation between plant DNA methylation in the whole genome and gene expression by high-throughput sequencing technologies.
    A Review on Properties,Production,and Application of Fungal Laccases
    LIU Jia-yang,, JIAO Guo-bao ,YOU Xiao-juan ,LIAO Xiang-ru, SUN Li-peng
    2016, 32(4):  24-33.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.003
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    As one of copper-containing oxidoreductases,fungal laccase shows better thermal stability,higher metal tolerance and catalytic oxidative to substrates than bacterial or plant ones,and thereby draws great attentions on applications in industry,agriculture and environmental protection. It is widely considered that the factors limiting the extensive application of laccase are production scale,process cost as well as its properties. Laccase can be produced via solid or liquid state fermentation,and the latter is usually adopted for industrial purposes. Recent progress has expanded the novel applications of laccase in addition to its conventional uses such as dye decolorization,treating wastewater of dyeing and paper pulp bleaching. This paper reviews the published literatures in recent years while focusing on the production,properties,and application of fungal laccase.
    Research Progress on Induced Pluripotent Stem Cells in Hematopoietic Diseases
    FAN Di ,SUN Xiao-fang
    2016, 32(4):  34-38.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.004
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    Hematopoietic stem cell transplantation for the treatment of blood system diseases has been had great progress. However,due to the issues of limited donor and matching efficiency is not high,which seriously hindered its wide application in clinic. It is imperative to seek more secure,economical and effective resources of hematopoietic stem cell. Induced pluripotent stem cells can be differentiated into a variety of cells in vitro,especially deeper research on induced differentiation into hematopoietic stem cells in vitro. In this paper,iPS cells directed differentiation to hematopoietic stem cells in vitro and research progress on transplant are reviewed.
    Research Progress on miRNA Detection Techniques with High Sensitivity and High Selectivity
    CHEN Zhen-zhu, LI Rui, TIAN Fei ,SHEN Yan-ting, GE Qin-yu
    2016, 32(4):  39-47.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.005
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    microRNAs(miRNAs),a class of small,endogenous and non-coding RNAs,play critical regulatory functions in many cell processes such as cell development,fat metabolism,organs generation,cell differentiation and apoptosis,etc. Researchers have discovered that the dysregulation of miRNA expression is closely associated with various diseases including human cancers and diabetes. Therefore,the prompt and accurate detection of miRNA expression is the prerequisite for the further researches on it. Many assays for miRNA detection have recently been developed,but the detection techniques for polymorphism and mutation of miRNA are not so mature. Furthermore,the sensitivity for detection technology of microscale miRNA in biological samples also needs further development and breakthroughs. The new developed miRNA detection techniques with high selectivity and high sensitivity are reviewed in this paper,and then this may provide important assistance for further study on the related detection technologies.
    Application Progress of Aptamers in the Detection of Food-borne Pathogenic Bacteria
    XIE Pei-yan ,ZHU Long-jiao, XU Wen-tao,
    2016, 32(4):  48-62.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.006
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    Aptamers are artificial DNA/RNA oligonucleotides binding target ligands with high affinities,and they are selected from the libraries of single-strand nucleic acid random sequence in vitro by SELEX. Compared with the traditional methods,application of aptamers has the obvious advantages of high specificity,chemical stability and simplicity of modification in the detection of food-borne pathogenic bacteria,thus it draws attentions and applications in this field. However,the combination principle of aptamers to the target has not been understood clearly yet,and summaries on the selection of aptamers against food-borne pathogenic bacteria and its application are still deficient. Combined with the characteristics of food-borne pathogenic bacteria,this article describes the selection characteristics of aptamers against them,and the latest progress in the detection field. Finally,the existing problems and development trend are proposed.
    Research Progress on Phytoremediation of Wastewater Containing Bisphenol A
    WANG Lin SUI ,Chun-xiao,, WANG Jin
    2016, 32(4):  63-67.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.007
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    Bisphenol A,as an important production material,has been increasing dramatically in the environment in recent decades. Bisphenol A is one of the endocrine-disrupting compounds and hormone-like substances,which simulates,strengthens and inhibits the effects of hormone;in some cases,bisphenol A induces the proliferation and tumor of tissues or organs. Phytoremediation is a new environmental remediation technology developed in recent years,and is becoming promising in the field of bioremediation. Based on reading all related literatures,the selection of plants for remediation of bisphenol A was summarized,also the mechanism of phytoremediation of bisphenol A was discussed from three aspects:glycosylation effect of plant,degradation of rhizosphere enzyme,and joint metabolism of rhizosphere and microorganisms. Moreover,applications and researches of the phytoremediation of wastewater containing bisphenol A were reviewed,aiming at providing the references for phytoremediation of bisphenol A wastewater.
    The Optimization of Isolation Method for Mesophyll Protoplast from Common Wheat(Triticum aestivum)Seedlings
    XI Hai-xiu, AI Ke-jun, TONG Shao-ming
    2016, 32(4):  68-73.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.008
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    By orthogonal test,we analyzed the effects of concentrations of cellulose,macerozyme,and mannitiol as well as the time of enzyme digestion on the productivity and vitality during the isolation of protoplast from 7 days of wheat seedling mesophyll. Further,the transient expression technology was employed to analyze the effects of PEG concentration on the transformation efficiency by PEG-Ca2+-mediated transformation of mesophyll. The results showed that the optimal condition for isolating the mesophyll from wheat leaves was:1.5% of cellulase,0.75% of macerozyme,0.4 mol/L mannitol,and 3 h of enzyme digestion;the protoplast yield was 7.2×106 cells/g·FW,the vitality was more than 95%. The results from the transient expression technology revealed that transformation efficiency was the highest under 25% PEG.
    The Optimization of Chromosome Preparation and Immunofluorescence Staining for Root Tip of Nelumbo nucifera
    WANG Hai-yan,, ZHU Zhi-xuan, JIN Jing ,DING Yi
    2016, 32(4):  74-79.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.009
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    It is difficult to prepare lotus’s(Nelumbo nucifera)root tip chromosome in the cytogenetic study. Therefore,some related factors were studied,such as selecting the proper length of root tip,mitotic index,pretreatment medicament and time,the fixing time,the time of enzyme hydrolysis,and low osmosis in the chromosome preparation from the root tip cells of lotus,and then the immunofluorescence staining was also carried out to validate the chromosome preparation. The results showed that the mitotic index was the highest and morphology was clear when the root tips length was approximately 1.5 cm and the root tips was treated with ice water for 24 hours. The chromosome morphology was solid while root tips was for 1 h fixing with 4% paraformaldehyde. The enzyme hydrolysis was complete,the residue of cytoplasm was little,and the chromosome scattered well while the tips were digesting 30 min with combination of 2.5% cellulase and 2.5% pectinase at 37℃. The chromosome morphology was fine under 30 min low osmosis treatment by 1×PBS. Strong signals were detected after the immunofluorescence staining. This study set up the foundation for the relevant researches on cytogenetic and epigenetic studies of N. nucifera.
    Cloning and Bioinformatics Analysis of Gene GbHCT from Gossypium barbadense
    CUI Xue,JIADELA·Tuliuhan, YU Yue-hua, CHEN Quan-jia,SHEN Li-jie, YE Jia-li, YANG Ju-li,TAO Shun,NI Zhi-yong,
    2016, 32(4):  80-86.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.010
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    This study is to isolate full-length cDNA of a key enzyme gene GbHCT related to lignin metabolism in cotton(Gossypium barbadense L.),and analyze the expression of GbHCT in the different developing stages of cotton’s fiber. The primers were designed according to the HCT sequence in transcriptome data of sea island cotton,then the gene was cloned using RT-PCR,and the cDNA sequence and the amino acid sequence of GbHCT were analyzed by bioinformatics methods. The expressions of gene GbHCT in developing fibers of cotton were analyzed from the transcriptome data of sea island cotton. A gene encoding HCT,designated as GbHCT,was isolated from G. barbadense. The full-length of the GbHCT consisted of a 1,311 bp open reading frame(ORF)encoding 436 amino acids. The molecular weight of protein was 48.58 kD,with an isoelectric point(pI)of 6.03. The deduced amino acid sequence of the GbHCT had two conservative motifs HTLGD and DFGWG. The deduced amino acid sequence had a high homology with HCT from Gossypium hirsutum,Gossypium arboretum and Gossypium raimondii,however,it showed 55.7%-60.7% identities with HCTs of other plants. Analyzing the transcriptome data of sea island cotton revealed that gene GbHCT was expressed in all different development stages of fiber,and the peak of expression reached in 5 days post anthers(DPA)fiber cells,suggesting that this gene may be involved in fiber development.

    Polymorphism and Bioinformatics Analysis of Gene MC4R in 3 Sheep Populations
    LIU Jiao-jiao,, MA You-ji,
    2016, 32(4):  87-93.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.011
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    To investigate the molecular mechanism of Melanocortin-4 receptor(MC4R),PCR-SSCP was used to detect the polymorphism and analyze the bioinformatics of gene MC4R exon in 3 sheep populations(Gansu meat sheep new breeding population,Small Tail Han sheep,and Hu sheep). The results showed that 3 genotypes of AA,AB and BB existed in 3 populations,and the dominant genotype was BB,the preponderant allele was B. The sequencing analysis indicated that comparing wild BB and mutated AB,G→A mutation in locus 511 and T→C mutation in locus 495 happened in AB;G→A mutation in locus 511 with AA homozygosity and T→C mutation in locus 495 with CC homozygosity happened in AA. The PIC of Small Tail Han sheep was moderately polymorphic(0.25 < PIC < 0.50),Gansu meat sheep new breeding population and Hu sheep belonged to low polymorphism(PIC < 0.25). Except the Hu sheep,the other 2 sheep breeds were in Hardy-Weinberg equilibrium by χ2 test. Bioinformatics analysis showed that the amino acid sequence of MC4R had hydrophobic region significantly,7 transmembrane helical regions and signal peptide. The main elements in the second structure of the encoded protein were the α helix and random coil. Homology analysis demonstrated that the similarity of gene MC4R in sheep with goat,cattle,pig,human,and gorilla was 97%,94%,81%,83% and 83% respectively,indicating that MC4R was an evolutionarily conserved protein,and played an important role in growth o f sheep.
    Cloning and Expression Analysis of Gene nm23 during Ovarian Development of Portunus trituberculatus
    XU Qing ZHU ,Dong-fa, XIE Xi ,QIU Xi-er, SHEN Xi-quan
    2016, 32(4):  94-101.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.012
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    Nm23 is a family of genes encoding the nucleoside diphosphate(NDP)kinase,which functions in a wide variety of biological processes,including growth,development,differentiation,and tumor metastasis. In this study,based on the nm23 homologous sequence in the transcriptome dataset of Portunus trituberculatus,the full-length cDNA of P. trituberculatus nm23 was obtained using the rapid amplification of cDNA ends(RACE). The full-length cDNA(GenBank accession number KP027331)was 777 bp,encoding for a protein of 151 amino acids with one typical NDP kinase domain that harbored all the crucial residues for nucleotide binding and enzymatic activity. The deduced amino acid sequence of P. trituberculatus nm23 exhibited more than 90% identities with that of other crustaceans,and more than 70% identities with the nm23 of group I of vertebrates. The phylogenic tree constructed based on nm23’s amino acid sequences indicated that the crustacean nm23 belonged to the group I(nm23-1),which was separated from the nm23 of group II(nm23-2),moreover,the nm23-1 and nm23-2 were close. The expression levels of P. trituberculatus nm23 in different tissues and during the ovarian development were detected by quantitative real-time PCR(qPCR). The results showed that nm23 was ubiquitously expressed in all tissues examined,its mRNA level was the most abundant in eyestalk,muscle and Y-organs,and second in ovary and hepatopancreas. During the ovarian development,the nm23 was mostly expressed at stage I,then declined along with the development of ovaries,and to the minimum at stage V,suggesting that the nm23 had the potential role in the ovarian development of P. trituberculatus.
    Cloning and Expression Analysis of Temperature Induced Lipocalin Gene AhTIL1 of Peanut(Arachis hypogaea)
    ZHONG Rui-chun ,LI Ting-ting, ,TANG Rong-hua, WANG Xing-jun,, LI Cui ,HOU Lei,ZHAO Chuan-zhi,
    2016, 32(4):  102-109.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.013
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    The temperature-induced lipocalins(TILs)is correlated with the stability of plant under stress environment of hot,cold,lighting,and oxidizing. This study intended to clone the TIL gene from peanut and analyze its function in response to temperature stress. A gene encoding TIL,designated as AhTIL1,was screened from the peanut cDNA library. The relative expressions of the gene in the different tissues of peanuts,at the different stages of seeds,and under the temperature stress were detected by quantitative PCR. The results of sequence analysis showed that the length of the ORF of AhTIL1 was 558 bp,encoding 185 amino acids. The bioinformatics analysis indicated that the predicted molecular mass of encoded protein was 21.4 kD,ad pI was 6.78. Sequence alignment displayed that the amino acids of AhTIL1 were in high homology with TIL of other species. The predicted results of candidate promoter showed that the candidate gene promoter contained regulatory elements associated with the light reaction such as ACE,Box4,G-box,GAG-motif etc.,and other related cis regulatory elements such as ABA,salicylic acid,gibberellin,anaerobic etc. Microarray and RNA-seq results showed that AhTIL1 expressed in roots,stems,leaves,flowers,peg,and seeds,the highest in the flowers,second highest in the stems,and the least in the roots. After the peg penetrating into soil,the expression level of AhTIL1 decreased immediately,and then increased gradually with the enlarging and maturing of seeds. Real time quantitative PCR result proved that the expression level of AhTIL1 increased after low or high temperature treatment for 3,6,12 and 24 h,however,decreased after 48 h. These results indicated that AhTIL1 may play an important role in peanut response to temperature stress.
    Cloning,Subcellular Localization and Prokaryotic Expression of Gene TsGPX3 from Thellungiella salsuginea
    WANG Ning, CHEN Jing,, GAO Fei ,LI Hua-yun ,SUI Xin, ZHOU Yi-jun
    2016, 32(4):  110-115.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.014
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    A cDNA of TsGPX3(Thellungiella salsuginea GPX3)was isolated from T. salsuginea,and it contained a complete ORF with 591 bp encoding 196 amino acid residues. The three conservative domains of TsGPX3 protein in GPXs family was predicted by bioinformatics analysis. Phylogenetic analysis discovered that TsGPX3 was in high homology with RsGPX3 of Raphanus sativus,BnGPX3 of Brassica napus,and BoGPX3 of B. oleracea etc.,all belonging to Brassicaceae. The plant-expressed vector pRTL2-TsGPX3-GFP was transiently expressed by transforming the protoplasts of Arabidopsis thaliana via PEG method,and it was discovered that the TsGPX3 protein was mainly located in the plasma membrane. The constructed prokaryotic vector pET-TsGPX3 was transferred into Escherichia coli strain BL21(DE3)for induced expression under different concentration of IPTG,and a 27 kD recombinant protein was highly expressed after induced for 5 h at 37℃.
    Sequence Analysis and Prokaryotic Expression of GmGS1γ Gene from Nodules of Glycine soja
    YANG Mei-ying, YUE Sheng-tian ,HAN Hong ,SUN He-mei, LIU Jing-jing, LU Dong-xue
    2016, 32(4):  116-120.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.015
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    In order to clarify the structures and functions of the members of the glutamine synthetase(GS)gene family,the GmGS1 gene was cloned from Glycine soja by homologous cloning. The bioinformatics analysis showed that,the ORF was 1 071 bp,and the similarity was 100% and 99% with the partial sequence of soybean GS1γ(AF363022.1)and X81700.1,respectively. The sequence had two conserved domains of plant GS,beta-Grasp GS functional area(17-97 aa),and GS catalytic functional area(103-350 aa). Phylogenetic tree showed that GS encoded by the gene GmGS1 probably belonged to glutamine synthetase cytosolic isozyme 2. The gene was expressed in Escherichia coli DE3.0,and the molecular weight of the protein was 44 kD.
    High-level Expression of a Type 2 Metallothionein Protein(HcMT)from Halostachys caspica in Escherichia coli and Its Metal-binding Ability
    MENG Hong-en, DU Rong-feng, XU Xin,LIU Zhong-yuan
    2016, 32(4):  121-127.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.016
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    This study aims to evaluate the prokaryotic expression and metal-binding ability of metallothionein protein in Halostachys caspica(HcMT). HcMT cloned from H. caspica was transferred to prokaryotic expression vector pGEX-6p-2 and expressed in Escherichia coli BL21. Then the glutathione S-transferase(GST)fusion protein(GST-HcMT)was isolated and purified. Using atomic absorption spectrometry,the metal-binding ability of the GST-HcMT was determined by measuring the amount of metal ions it bound with. The results showed that the molecular weight of expressed fusion protein GST-HcMT was about 34 kD,which was as expected and confirmed by Western blot. Furthermore,GST-HcMT bound 25,10,4,2 folds of Cu2+,Zn2+,Pb2+,and Cd2+ separately as GST alone,and the binding ability of GST-HcMT was as follows:Cu2+ > Cd2+ > Zn2+ > Pb2+.
    Cloning and Expression Analysis of Gene Encoding 1-Deoxy-D-xylulose 5-Phosphate Synthase in Gentiana rigescens
    ZHANG Hai-chen, LI Cai-xia, WANG Yuan-zhong, ZHANG Xiao-dong
    2016, 32(4):  128-136.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.017
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    The aims of this study are to clone the gene GrDXS encoding 1-deoxy-D-xylulose 5-phosphate synthase from Gentiana rigescens,and to analyze its expression. Based on the transcriptome of G. rigescens,a GrDXS gene was cloned from young leaves of G. rigescens by RT-PCR technology,and its prokaryotic and tissue-specific expression were also performed. The GrDXS gene(GenBank accession number:KJ624995)had a length of 2 145 bp coding for 714 amino acids,and the relative molecular weight of GrDXS protein was 76.75 kD with its pI of 6.93. GrDXS protein belonged to the member of DXS superfamily,and may localize in chloroplast,GrDXS protein composed of mainly random coil(47.06%)and α-helix(34.45%). Four kinds of conserved domains: Thiamin diphosphate-binding fold(IPR029061,69-425,366-555,87-268,315-407,407-558),Transketolase-like,pyrimidine-binding domain(IPR005475,394-559,394-555),Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase,domain II(IPR009014,568-704,572-704),and Transketolase binding site(IPR020826,500-516),were all existing in GrDXS protein. GrDXS protein was the closest with CrDXS in Catharanthus roseus. The recombinant protein of GrDXS gene in Escherichia coli was approximately 100.00 kD(containing GST tag protein 26 kD),which was consistent with the anticipated size. GrDXS gene was primarily expressed in leaf.
    Molecular ID Establishment of 13 Chinese Newly-developed Grape Cultivars
    WANG Hui-ling, ,YAN Ai-ling, ,SUN Lei, ,ZHANG Guo-jun, WANG Xiao-yue ,XU Hai-ying
    2016, 32(4):  137-142.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.018
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    Using 13 newly-developed grape cultivars as experimental materials,the phylogenetic relationship among them were analyzed and their molecular IDs were established,which aimed to provide the references for identifying the grape cultivar and protecting the new ones. SSR analysis was carried out on the tested grape cultivars with the international commonly-used 9 pairs of primers,and the codes of each cultivar was assigned according to the molecular weight of the amplified band of different cultivar by the primer. The results showed:a total of 48 alleles and an average of 5.3 alleles per primer were detected by 9 pairs of primers. The expected heterozygosity varied between 0.435-0.811,and the information content of polymorphism ranged from 0.401 to 0.784. After alleles assignment and coded,the molecular IDs of cultivars were established,by which the 13 grape cultivars can be identified. According to the clustering analysis,13 cultivars showed clear separations due to their different parents.
    DNA Extraction,Optimization of SSR-PCR Reaction System and Primer Screening of Persea americana
    ZHOU Hai-lan, LI Shao-peng, LI Wei-liang, HE Jun-hu ,BAO Dong-hong, LI Mao-fu
    2016, 32(4):  143-150.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.019
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    This study is to establish a stable and reliable DNA extraction method,optimize the SSR-PCR reaction system,and screen the stable polymorphism primers for avocado(Persea americana Mill)SSR for providing the genetic foundation to conduct the SSR molecular marker of germplasm in avocados. Taking avocado’ leaves as the study material,3 avocado DNA extraction methods were compared,based on the L16(45)orthogonal experiment design,the SSR-PCR reaction system in avocados was optimized,and then by optimized reaction system the SSR primers were screened. To further test the stability of the optimized SSR-PCR system,the germplasms in 45 pieces of avocados were amplified by PCR using 5 pairs of polymorphism primers. The results showed that:among 3 DNA extraction methods of conventional 2×CTAB method,improved 2×CTAB method,and plant DNA kit method,the improved 2×CTAB method was the best regarding the extraction effect of avocado genomic DNA. The optimal SSR-PCR reaction system in avocados was:a total volume of 20 μL containing 40 ng of genomic DNA,1.5 mmol/L Mg2+,0.15 mmol/L dNTPs,0.5 U Taq DNA polymerase,0.5 μmol/L primer. Based on the above optimized reaction system,30 pairs of polymorphism primers with clear bands were screened from 73 SSR primers of avocados,indicating that the reaction system can be used for the further study of SSR markers in avocados. The bands of stability test were clear,showing that the optimized system was stable and reliable. Thus,improved 2×CTAB method can be used in DNA extraction of plentiful samples,and the optimized SSR-PCR reaction system and the 30 polymorphism primers can be utilized for the further study of SSR markers in avocados.
    RAPD Analysis of Genetic Diversity in Saccharina japonica Germplasm Resources
    LI Yan, LIU Yan-ling, CUI Cui-ju ,LI Xiao-jie, LIANG Guang-jin ,PENG Jie ,TIAN Ping-ping
    2016, 32(4):  151-158.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.020
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    The genetic diversity of 36 gametophytes of 19 varieties(or lines)of Saccharina japonica was analyzed with RAPD(random amplified polymorphic DNA)markers. Sixteen primers with clear bands were selected out from 100 primers for diversity analysis. These primers amplified 362 DNA bands from 36 gametophytes,and 99.45% of the bands were polymorphic. The genetic similarity of the 36 gametophytes ranged from 0.682-0.978. The 36 gametophytes germplasm were clustered into 6 groups while 0.756 was as the minimum genetic similarity coefficient. The UPGMA cluster results indicated that the male and female gametophyte of the same species were clustered together,and genetic diversity among species was high.
    Genetic Diversity Analysis of Populus yunnanensis by SRAP Markers
    YAN Lu-xi,, LI Jia-man,, YUAN Tao, ,ZHOU An-pei, ,ZONG Dan,, LI Dan, XIN Pei-yao,, ,HE Cheng-zhong,,
    2016, 32(4):  159-167.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.021
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    To figure out the genetic diversity and genetic structure of Populus yunnanensis,208 samples from 7 populations were analyzed by sequence-related amplified polymorphism(SRAP)markers. With selected 7 pairs of primers,146 bands were obtained,in which 73 fragments(50%)were polymorphic. The values at the species level were 1.500 0 for observed alleles number(Na),1.230 9 for effective alleles number(Ne),0.136 6 for Nei’s genetic diversity index(H),and 0.210 0 for Shannon’s information index(I). The genetic differentiation coefficient(Gst)was 0.529 4 and gene flow(Nm)was 0.444 4 and on intermediate stage,indicating that genetic variability of P. yunnanensis mainly took place among populations. Similarly,AMOVA showed that the genetic diversity among populations accounted for 55.61% of total. Clustering analysis by UPGMA,PCoA and Bayesian constantly revealed that population Lijiang and Qujing were in close relationship,and the same for population Chuxiong and Zhaotong. In addition,no correlation between the genetic distance and geographical distance was found by Mantel Test.
    Screening and Growth Characteristics of a Heterotrophic Nitrification Bacterium
    HAO Minghui ,YU Lu-ji,, LI Ting-mei, LIU Pan-long
    2016, 32(4):  168-174.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.022
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    The objective of this study is to isolate a strain of heterotrophic nitrification bacterium with high efficiency of removing ammonia-nitrogen from Jialu River of collecting wastewater at Zhengzhou City of Henan Province,and to study its growth characteristics. The collected samples were screened by the traditional methods of microorganism separation and purification,the strain was identified using molecular biology methods,and the culture conditions of the strain were optimized by single factor experiment. Based on 16S rDNA sequence analysis,it was identified as Pseudoxanthomonas sp.,designated as C2. The strain C2 had heterotrophic nitrification and grew rapidly while organic substances existed. C2 entered the logarithmic phase after 4 hours of culturing when the inoculation quantity was 10%. The optimal condition for heterotrophic nitrification was as follows:the inoculation quantity was 3%,the sodium succinate was taken as the only carbon source,the initial pH was 6-9,and the incubation temperature ranged from 25-30℃;the shaking speed had little effect on the activity of removing ammonia-nitrogen in this experiment. In conclusion,the removal rate of ammonia-nitrogen is relatively high,which demonstrates that it is promising to be applied in removing ammonia-nitrogen from practical water bodies.
    The Isolation and Identification of an Efficient Fe/Mn-oxidizing Bacterial Strain P1,and the Optimization of Its Oxidizing Conditions
    FAN Xing ,WANG Shu-ting, LI Chun-yan
    2016, 32(4):  175-183.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.023
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    By enrichment culture,a Fe/Mn-oxidizing bacterial strain P1 was isolated from the sludge samples of groundwater well that was rich in Fe/Mn. According to morphologic and physiological-biochemical characteristics as well as 16S rDNA sequence analysis,strain P1 was identified as Bacillus cereus. Concurrently,single factor test was used to study the growth of strain P1 and its oxidation characteristics;and the response surface methodology(RSM)was employed to explore the effects of inoculation size,temperature and pH on the oxidation characteristics of strain P1 and further optimize the oxidation conditions. The results showed that the optimal oxidation conditions were temperature 28.54℃,pH 7.23,and inoculation size 4.35 %. At the optimal conditions,the removal ratios of Mn and Fe were 93 % and 100 % respectively in the selective medium containing 200 mg/L Fe and 800 mg/L Mn after strain P1 was cultured for 3 d.
    Isolation and Identification of Endophytic Bacteria in Red Grape,and Screening of Antagonistic Bacteria Against Botrytis cinerea
    ZHOU Ling-xuan,LIU Ya
    2016, 32(4):  184-189.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.024
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    This experiment aims to separate the endophytic bacteria,which have the strongly antagonistic effect on Botrytis cinerea,from different parts of red grape in Xinjiang. The tissue isolation was adopted to separate the endophytic bacteria from different parts of red grape,and concurrently 16S rDNA sequence determination and homology analysis were carried out. Meanwhile,the antagonistic effect of endophytic bacteria on B. cinerea was analyzed by confrontation culture method and disc diffusion assay method. The results showed that 5 of 18 strains of endophytic bacteria had solid antagonistic effect,they were NR4-1,NR5-1,NG4-1,NP1-1,and PG1 respectively,and the bacteriostasis rate reached 68.7%.

    Functional Complement Between General Nitrogen Regulator GlnG in Escherichia coli and General Nitrogen Regulator NtrC in Pseudomonas
    KE Qi, ,CHEN Qing-hua, ZHAN Yu-hua, LU Wei, YAN Yong-liang
    2016, 32(4):  190-197.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.025
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    This study aims to investigate whether or not there is functional complement in general nitrogen-regulation network between nitrogen metabolism regulator GlnG from Escherichia coli DH10B and NtrC from Pseudomonas stutzeri A1501. Using gene glnG of DH10B to complement gene ntrC of A1501 or vice versa,the physiological and biochemical phenotypes of the obtained functionally complementary strains were measured. The results showed that while nitrate or urea as the sole nitrogen source,DH10B’s glnG complemented the nitrogen-utilizing ability and partially restored the nitrogenase activity(about 45% of wild type)of mutant A1501’s ntrC. Comparing with DH10B’s glnG,A1501’s ntrC only complemented mutant DH10B glnG while arginine as sole nitrogen source. Above results revealed that not only was there close phylogenetical relationship,but also the functional complement in the tested nitrogen metabolism between DH10B’s GlnG and A1501’s NtrC.
    The Construction of the Gene Transfer System of Strain Streptomyces sp. 211726 Producing Azalomycin F
    MA Yan-ling, LIU Fu-lai, ZHANG Min, SUN Yu-hui, HONG Kui
    2016, 32(4):  198-202.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.026
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    The objective of this study is to establish the gene transfer system of strain Streptomyces sp. 211726 producing azalomycin F,which can be used for genetic manipulations such as gene knock-out and expression of foreign genes. Intergeneric genetic transfer system of Streptomyces sp. 211726 producing azalomycin F was constructed by conjugating integrative plasmid pSET152 with pIB139. Results showed that 25 mg/mL apramycin may be used to efficiently screen conjugants. PCR verification revealed that exogenous plasmid was successfully integrated in the chromosomal DNA of Streptomyces sp. 211726. The continuous passage culture experiment demonstrated that transformed pSET152 and pIB139 of conjugants were stably inherited.

    A Method for Constructing Unmarked Deletion Mutants of Pseudomonas plecoglossicida NyZ12
    MAO Ling-qi, LI Cun-zhi ,YAN Da-zhong
    2016, 32(4):  203-209.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.027
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    This study aims to establish a practical method for an unmarked gene knockout of Pseudomonas plecoglossicida NyZ12 that degrades cyclohexylamine,which is significant for further studying the molecular mechanism of it degrading cyclohexylamine. The upstream and downstream flanking DNA fragments of the target gene were fused by overlapping PCR,and then cloned into the suicide vector pEx18km. The recombinant plasmid was introduced into Escherichia coli strain S17 pir and then transferred into NyZ12 by conjugation. The mutants by inverse screening sacB gene in pEx18km was identified by PCR and sequencing. The mutant NyZ12Δ4637 from NyZ12 strain orf4637 were successfully constructed. In conclusion,the unmarked gene-knockout mutant was acquired using homologous recombination of suicide vector,and there was no resistance residual of screening marker on the genome of the mutant. This study provides a reliable gene-knockout technology for investigating the genetic functions of NyZ12.
    Steady-state and Time-resolved Fluorescence Spectroscopy to Detect the Cruciform Structure in pBR322
    XIA Lan, ,ZHANG Xu,
    2016, 32(4):  210-216.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.028
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    The specific aim of this work is to probe the formation process of DNA with cruciform extrusion in a pBR322 plasmid using spectroscopic methods while without digesting DNA into pieces. Pyrrolo deoxycitidine(PdC)was incorporated into pBR322 to substitute for dC at specific sites of 3 195,3 222 or 3 281. Steady-state and time-resolved fluorescence were employed to examine the specific properties of PdC in the cruciform region. Results were as followings:1)Steady-state fluorescent properties indicated that the fluorescence intensity of supercoiled PdC-pBR322 was about 4-fold stronger than that of relaxed PdC-pBR322,when PdC was incorporated into pBR322 at position 3 222;meanwhile,its time-resolved lifetime was about 0.3 ns longer than that of relaxed PdC-pBR3322. When PdC was incorporated at position 3 195 or 3 281,there was no significant change in either steady-state fluorescence spectra or time-resolved lifetime(about 1.42 ns at both positions). 2)Lifetimes changed a little with the increasing of salt concentration,but not significantly. In conclusion,by analyzing fluorescence spectra and lifetimes(both in relaxed state and supercoiled plasmid),a cruciform structure with dC at site 3 222 of impaired loop is formed,and the cruciform is stable within this investigated salt concentration range(0-100 mmol/L).
    Complete DNA Sequence Analysis of a Cryptic Plasmid Isolated from Weissella confusa
    WANG Hai-juan, DAI Yu-ke, SU Sen-sen, WANG Ying, PAN Qu
    2016, 32(4):  217-221.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.029
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    A cryptic plasmid isolated from Weissella confusa QJ012,designated as pQJ012,was sequenced and characterized,and it was a 1489 bp circular molecule with a 42.8% G+C content. The result of BLAST showed that nucleotide sequence of pQJ012 was in homology with pJY33(93%)and pKLCA(92%). ORF1 encoded a 282 amino acid residue Rep protein that was 91% identical to pJY33 and 85% identical to pKLCA in homology. Sequence analysis indicated that plasmid pQJ012 belonged to pT181 family of rolling-circle replication(RCR). The pQJ012 may be constructed as a promising expression vector.
    Intracellular Inhibitory Effect of Synthetic Peptide on Mycobacterium tuberculosis
    CHEN Ji ,YIN Yu-he, LI Ling-ling ,JIN Hao, TONG Ming-yi, WU Cong-mei
    2016, 32(4):  222-227.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.030
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    This work is to evaluate the toxicity of the synthetic peptides on mononuclear macrophage THP-1 of human leukemia and the intracellular bacteriostatic effect on Mycobacterium tuberculosis H37Rv. The minimum inhibition concentration(MIC)of the synthetic polypeptide on H37Rv was determined through the different drug concentrations of poly-peptides. Then,the toxic effects of peptide-2 on THP-1 cells were detected using flow cytometry method and MTT method. The colony-forming unit(CFU)method was used for detecting intracellular bacteriostatic effect of peptide-2 on H37Rv. Results were as below:All 4 screened peptides had bacteriostatic effect,the MIC of peptide-2 was 200 mg/mL. When the peptides-2 interacted with THP-1 cells,the cytotoxicity emerged at the concentration of 1200 mg/mL,meaning that there was no significant difference from INH’s cytotoxicity. For intracellular H37Rv,the anti-tuberculosis effects of peptide-2 presented time- and dose- dependent effect,the H37Rv colony count was obviously decreased with the increase of the time and dose. In conclusion,not only has the peptide-2 small toxicity to the macrophage THP-1,but also solid intracellular anti-M. tuberculosis effect,and it can be a new and potential anti-tuberculosis drug.
    The Regulation of Mecp2 on Notch Signaling Pathway During Early Neural Development of Zebrafish Embryos
    HE Li-fan ,GAO Hai
    2016, 32(4):  228-233.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.031
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    This study aims to explore the regulation role and mechanism of Mecp2 during early neural development of zebrafish embryos. By the techniques of confocal laser scanning microscopy and in situ hybridization,and using Notch transgenic fish,it was found that Mecp2 widely expressed in the early embryonic development,then gradually expressed in the brain. In the embryos with Mcep2 knockdown,the expression of Notch signal decreased,and both the injection of Mcep2-RNA and intracellular INCD-RNA restored the phenotype. The expression of neural factors of Ngn1,Pax2,Pax3,Eno2,and Map labelling for neural maturation as well as HUC binding with RNA were downregulated. After Mecp2 knocked down,the expression of transcriptional repressor Hey2 downregulated because the knockdown hindered the differentiation and maturation of neural cells. Our study showed that Mecp2 regulated the differentiation of nerve cells of zebrafish through Notch-Hey2 signaling pathways.
    The Cytotoxic Effects of PTEN-mRNA-engineered Mesenchymal Stem Cell on U251 Glioma Cells
    GUO Xing-rong, WANG Xiao-li, YUAN Ya-hong ,TU Han-jun
    2016, 32(4):  234-241.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.032
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    Mesenchymal stem cells(MSCs)have been considered of great potential as ideal carriers for the delivery of anticancer agents since the discovery of their capacity of tumor-oriented migration and integration. Differing from DNA-based vectors,synthesized mRNA in vitro owns the properties of its easy transfection and mutagenesis-free. This study aims to investigate the effects of phosphatase and tensin homolog(PTEN)mRNA-engineered MSCs on human glioma U251 cells under indirect co-culture condition. PTEN mRNA by in vitro transcription was transfected into MSCs,and then the expression of protein PTEN in the transfected MSCs was detected by Western blot,and the migration and integration effects of PTEN mRNA transfection on MSC tumor cells were verified using transwell co-cultures. The cytotoxic effects of PTEN mRNA-engineered MSCs on the U251-Luc glioma cells were detected with luminescence and fluorescence microscopy under indirect co-culture condition. The in vitro synthesized PTEN mRNA was transfected to U251-Luc cells,protein PTEN expressed correctly and the expression was the highest at 24 hours after transfection. An enhanced migration rate was observed with MSCs transfected with PTEN mRNA compared to non-transfected MSCs(P<0.05). A significant inhibition of U251 cells was observed when they were cultured with conditioned medium from PTEN mRNA-engineered MSCs(P<0.05). The results suggest that anticancer gene-bearing mRNA synthesized in vitro provides new insights into the MSC-mediated targeted gene therapy of glioblastoma.
    The Effects of Microcarrier Concentration and Cell Density on the Growth of Swine Testicle Cells
    CHEN Yi-heng ,TAO Shu-yu, LIU Xu-ping ,TAN Wen-song
    2016, 32(4):  242-250.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.033
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    This study is to select the suitable microcarrier concentration and cell seeding density for enhancing the utilization of microcarrier,and optimize the adhered growth and maintenance of ST(swine Testicle)cells. The effects of microcarrier concentration and seeding density on cell growth and maintenance were investigated using 2 different mediums:DMEM supplemented 10% serum or low serum medium(LSM). Further,the utilizations of Cytodex 1 microcarrier by ST cells under different conditions were compared. Results were as below:continuous culture of ST cells in T150 flask using LSM lasted for 30 days,and the average specific growth rate was 0.626 d-1,which was 1.15 times of that using DMEM supplemented with 10% FBS. The maximum cell density was 38.3×10 cells/mL and the utilization was up to 58.8% when microcarrier concentration was 3 g/L Cytodex 1 in mixing bottle and seeding density was 10×105 cells/mL. Furthermore,when cultured in perfusion system for 15 days,the final ST cell density reached 36.6×105 cells/mL,which amplified 14.6 times. Conclusively,the uses of serum and microcarrier are favorable for ST cell adhesion and growth to achieve high cell density,but also this increases the cost of introducing microcarrier. Maximum utilization of microcarrier and nutrients in the medium,and the optimal growth and maintenance could be achieved through selecting suitable microcarrier concentration and seeding density. The results in this work provide guidance for further industrial-scale microcarrier culture system producing CSFV vaccine.
    Microbial Diversity of Traditional Soybean Paste During Fermentation in Northeastern China
    GAO Xiu-zhi ,YI Xin-xin, LIU Hui ,WANG Xiao-dong ,CUI Zong-jun
    2016, 32(4):  251-255.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.034
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    This work is to analyze the dynamic variation of microbial community during the fermentation of traditional soybean paste in northeastern China. Selecting the fermented 0 d,35 d,65 d,75 d and 105 d soybean pastes as research materials,the microbial diversity was analyzed,and the changes of proteins and amino acid-nitrogen were detected,by PCR-DGGE technique. The results showed that the dominant bacteria during the fermentation of soybean paste were Bacillus and Lactobacteria,and the Bacillus mainly covered the closely related species of B. subtilis,B. pumilus,B. amyloliquefaciens,B. licheniformis,et al. The main species of Lactobacteria included the closely related ones of Lactococcus,Leuconostoc,Weissella cibaria,et al. The dominant fungi during the fermentation of soybean paste were the closely related species of Aspergillus oryzae,Eurotium rubrum,and Aspergillus chevalieri,and they decreased gradually with the fermentation time. The crude protein of the soybean paste finally decreased to 24.76% after increasing smoothly in former fermentation process. The amino acid-nitrogen kept on increasing during whole progress and its concentration was up to 101.2 g/kg in final soybean paste.
    The Protective Effect of Haworth Fruit Extract on Caenorhabditis elegans in Acute Damages
    ZHAO Jiang, CHEN Chun, WANG Yi-fei, ,WANG Hong, ,HUANG Jie, ,WANG Hao
    2016, 32(4):  256-260.  doi:10.13560/j.cnki.biotech.bull.1985.2016.04.035
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    The work aims to study the protective effect of haworth fruit extract(HFE)on the acute oxidative damage and its possible protection mechanism in Caenorhabditis elegans. The C. elegans were fed with nematode growth medium(NGM)containing different dose of HFE(0,25,50 and 100 μg/mL)to study impacts of HFE on the acute stress tolerance. C. elegans with feeding in different dose of HFE had a longer lifespan than the normal group,moreover,their lifespans became significantly longer under the experiments of juglone oxidative stress,heat stress and UV radiation stress. Concurrently,the autofluorescence level of lipofuscin in HFE group of C. elegans significantly decreased and it was dose-dependent effect to the concentration of HFE. In conclusion,HFE significantly prolongs the lifespan of C. elegans and has a solid protection under a variety of oxidative stress conditions with improving the antioxidant capacity and efficient anti-aging
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    2016, 32(4):  300. 
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    2016, 32(4):  400. 
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    2016, 32(4):  500. 
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