Biotechnology Bulletin ›› 2024, Vol. 40 ›› Issue (12): 34-44.doi: 10.13560/j.cnki.biotech.bull.1985.2024-0361
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WANG Jing(
), ZHANG Xiao-lei, BAI Yu, SHENG Yu-xin, GUAN Hai-tao(
), WEN Hong-tao(
)
Received:2024-04-15
Online:2024-12-26
Published:2025-01-15
Contact:
GUAN Hai-tao, WEN Hong-tao
E-mail:buyijingjing@163.com;wen0891@163.com;ght20080808@126.com
WANG Jing, ZHANG Xiao-lei, BAI Yu, SHENG Yu-xin, GUAN Hai-tao, WEN Hong-tao. Establishment of a Universal PCR Detection System for Different Maize Events[J]. Biotechnology Bulletin, 2024, 40(12): 34-44.
| 物种 Species | 转化体 Events | 检出限 LOD | 25 mmol/L氯化镁25 mmol/L MgCl2/µL | 10 µmol/L脱氧核糖核苷三磷酸 10 μmol/L dNTP /µL | 引物终浓度 Final concentration of primers /(µmol·L-1) | DNA聚合酶 DNA polymerase /(U·µL-1) | 25 mg/L模板 25 mg/L template /µL | 终体积 Final volume(ddH2O)/µL |
|---|---|---|---|---|---|---|---|---|
| 玉米Maize(Zea mays L.) | IE09S034, 12-5 | 0.10% | 1.5 | 0.2 | 0.2 | 0.025 | 4 | 25 |
| 5307, C0010.3.7, GH5112E-117C, Bt506 | 0.10% | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 25 | |
| DBN9858, MON87427, 4114, DBN9936, VCO-Ø1981-5 | 0.10% | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| C0010.1.3 | 0.10% | 1.5 | 0.2 | 0.6 | 0.025 | 2 | 25 | |
| MON88017 | - | 2.5 | 0.2 | 0.2 | 0.025 | 2 | 25 | |
| 59122, BVLA430101, BVLA430101, MON89034 | - | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| TC1507, MON863, GA21, NK603, T25, BT10, CBH351 | - | 2.5 | 0.2 | 0.5 | 0.025 | 1 | 50(31.7) | |
| MIR604 | - | 2.5 | 0.2 | 0.5 | 0.025 | 2 | 25 | |
| MON87460, DAS-40278-9, BT11 | 1 g/kg | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 25 | |
| 3272, BT176, MON810 | 1 g/kg | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| MIR162 | 1 g/kg | 1.5 | 0.2 | 0.5 | 0.025 | 2 | 25 | |
| CC-2 | 20拷贝 | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 25 | |
| G1105E-823C | 20拷贝 | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| C0010.3.1 | 39拷贝 | 1.5 | 0.2 | 0.6 | 0.025 | 4 | 25 | |
| C0030.2.4, C0030.2.5 | 40拷贝 | 1.5 | 0.25 | 0.3 | 0.025 | 4 | 25 | |
| 大豆Soybean(Glycine max L.) | MON89788, A2704-12 | - | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 25 |
| SHZD32-1 | 0.10% | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 25 | |
| MON87701, SYHT0H2 | 0.10% | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| MON87708 | 0.10% | 1.5 | 0.2 | 0.5 | 0.025 | 2 | 25 | |
| DAS68416-4 | 0.10% | 1.5 | 0.2 | 0.8 | 0.025 | 2 | 25 | |
| DAS-444Ø6-6 | - | 1.5 | 0.2 | 0.2 | 0.050 | 2 | 25 | |
| A5547-127 | - | 2.5 | 0.2 | 0.4 | 0.050 | 2 | 25 | |
| DP356043, DP305423, FG72, CV127 | - | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| GTS40-3-2 | 1 g/kg | 2.0 | 0.2 | 0.4 | 0.025 | 1 | 25 | |
| MON87705, MON87769 | 1 g/kg | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| 棉花Cotton(Gossypium hirsutum L.) | LLcotton25, COT102 | - | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 |
| GHB614 | - | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 25 | |
| Bt, MON88913, MON1598, MON1445 | - | 2.5 | 0.2 | 0.4 | 0.05 | 2 | 25 | |
| 油菜Rape(Brassica napus L.) | MON88302 | - | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 50 |
| 73496 | 0.05% | 1.5 | 0.2 | 0.6 | 0.025 | 4 | 25 | |
| Topas19/2 | - | 2.5 | 0.2 | 0.25 | 0.05 | 1 | 50 | |
| RF1, T45, Oxy-235 | - | 2.5 | 0.2 | 0.5 | 0.025 | 1 | 50 | |
| RF3, RF2, GT73, MS1 | - | 2.5 | 0.2 | 0.5 | 0.05 | 1 | 50 | |
| 使用频率最高的扩增体系 The most frequently used amplification system | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | ||
| 使用频率最高的扩增体系占比 The percentage of amplification systems with the highest frequency of use | 47/70 | 68/70 | 29/70 | 59/70 | 48/70 | 54/70 | ||
Table 1 Comparison of amplification systems for common PCR identification methods of different crop events
| 物种 Species | 转化体 Events | 检出限 LOD | 25 mmol/L氯化镁25 mmol/L MgCl2/µL | 10 µmol/L脱氧核糖核苷三磷酸 10 μmol/L dNTP /µL | 引物终浓度 Final concentration of primers /(µmol·L-1) | DNA聚合酶 DNA polymerase /(U·µL-1) | 25 mg/L模板 25 mg/L template /µL | 终体积 Final volume(ddH2O)/µL |
|---|---|---|---|---|---|---|---|---|
| 玉米Maize(Zea mays L.) | IE09S034, 12-5 | 0.10% | 1.5 | 0.2 | 0.2 | 0.025 | 4 | 25 |
| 5307, C0010.3.7, GH5112E-117C, Bt506 | 0.10% | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 25 | |
| DBN9858, MON87427, 4114, DBN9936, VCO-Ø1981-5 | 0.10% | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| C0010.1.3 | 0.10% | 1.5 | 0.2 | 0.6 | 0.025 | 2 | 25 | |
| MON88017 | - | 2.5 | 0.2 | 0.2 | 0.025 | 2 | 25 | |
| 59122, BVLA430101, BVLA430101, MON89034 | - | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| TC1507, MON863, GA21, NK603, T25, BT10, CBH351 | - | 2.5 | 0.2 | 0.5 | 0.025 | 1 | 50(31.7) | |
| MIR604 | - | 2.5 | 0.2 | 0.5 | 0.025 | 2 | 25 | |
| MON87460, DAS-40278-9, BT11 | 1 g/kg | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 25 | |
| 3272, BT176, MON810 | 1 g/kg | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| MIR162 | 1 g/kg | 1.5 | 0.2 | 0.5 | 0.025 | 2 | 25 | |
| CC-2 | 20拷贝 | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 25 | |
| G1105E-823C | 20拷贝 | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| C0010.3.1 | 39拷贝 | 1.5 | 0.2 | 0.6 | 0.025 | 4 | 25 | |
| C0030.2.4, C0030.2.5 | 40拷贝 | 1.5 | 0.25 | 0.3 | 0.025 | 4 | 25 | |
| 大豆Soybean(Glycine max L.) | MON89788, A2704-12 | - | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 25 |
| SHZD32-1 | 0.10% | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 25 | |
| MON87701, SYHT0H2 | 0.10% | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| MON87708 | 0.10% | 1.5 | 0.2 | 0.5 | 0.025 | 2 | 25 | |
| DAS68416-4 | 0.10% | 1.5 | 0.2 | 0.8 | 0.025 | 2 | 25 | |
| DAS-444Ø6-6 | - | 1.5 | 0.2 | 0.2 | 0.050 | 2 | 25 | |
| A5547-127 | - | 2.5 | 0.2 | 0.4 | 0.050 | 2 | 25 | |
| DP356043, DP305423, FG72, CV127 | - | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| GTS40-3-2 | 1 g/kg | 2.0 | 0.2 | 0.4 | 0.025 | 1 | 25 | |
| MON87705, MON87769 | 1 g/kg | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | |
| 棉花Cotton(Gossypium hirsutum L.) | LLcotton25, COT102 | - | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 |
| GHB614 | - | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 25 | |
| Bt, MON88913, MON1598, MON1445 | - | 2.5 | 0.2 | 0.4 | 0.05 | 2 | 25 | |
| 油菜Rape(Brassica napus L.) | MON88302 | - | 1.5 | 0.2 | 0.2 | 0.025 | 2 | 50 |
| 73496 | 0.05% | 1.5 | 0.2 | 0.6 | 0.025 | 4 | 25 | |
| Topas19/2 | - | 2.5 | 0.2 | 0.25 | 0.05 | 1 | 50 | |
| RF1, T45, Oxy-235 | - | 2.5 | 0.2 | 0.5 | 0.025 | 1 | 50 | |
| RF3, RF2, GT73, MS1 | - | 2.5 | 0.2 | 0.5 | 0.05 | 1 | 50 | |
| 使用频率最高的扩增体系 The most frequently used amplification system | 1.5 | 0.2 | 0.4 | 0.025 | 2 | 25 | ||
| 使用频率最高的扩增体系占比 The percentage of amplification systems with the highest frequency of use | 47/70 | 68/70 | 29/70 | 59/70 | 48/70 | 54/70 | ||
| 物种 Species | 转化体 Events | 预变性 Pre-denaturation | 变性 Denaturation | 退火 Annealing | 72℃延伸 Extension at 72℃/s | 72℃终延伸 Final extension at 72℃/s |
|---|---|---|---|---|---|---|
| 玉米 Maize(Zea mays L.) | 5307, MON87427, 4114, C0010.3.7, GH5112E-117C, Bt506, C0010.1.3, CC-2, DBN9858 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 300 |
| MON89034, C0010.3.1, MON87460, BT176, MON810, 12-5, VCO-Ø1981-5, G1105E-823C | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| BVLA430101, BVLA430101 | 94℃, 300 s | 94℃, 30 s | 60℃, 30 s | 30 | 420 | |
| TC1507, MON863, GA21, NK603, T25, BT10, CBH351, 59122, MON88017, MIR604, IE09S034, DBN9936, C0030.2.4, C0030.2.5 | 95℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| MIR162, 3272 | 95℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| DAS-40278-9, BT11 | 94℃, 300 s | 94℃, 30 s | 56℃, 30 s | 30 | 420 | |
| 大豆 Soybean(Glycine max L.) | MON89788 | 94℃, 180 s | 94℃, 30 s | 58℃, 30 s | 30 | 300 |
| A2704-12, A5547-127 | 94℃, 300 s | 94℃, 30 s | 56℃, 30 s | 30 | 420 | |
| DP356043 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| DP305423, GTS40-3-2, MON87705, MON87769, MON87708 | 94℃, 300 s | 94℃, 30 s | 60℃, 30 s | 30 | 420 | |
| MON87701 | 95℃, 180 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| FG72 | 95℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| SHZD32-1 | 95℃, 300 s | 95℃, 30 s | 58℃, 30 s | 30 | 300 | |
| CV127, DAS68416-4 | 95℃, 300 s | 95℃, 30 s | 58℃, 30 s | 30 | 420 | |
| SYHT0H2 | 95℃, 300 s | 95℃, 30 s | 58℃, 45 s | 45 | 420 | |
| DAS-444Ø6-6 | 95℃, 420 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| 棉花 Cotton(Gossypium hirsutum L.) | MON1445 | 94℃, 300 s | 94℃, 30 s | 55℃, 30 s | 30 | 420 |
| LLcotton25 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 120 | |
| Bt | 94℃, 300 s | 94℃, 30 s | 60℃, 30 s | 30 | 120 | |
| MON88913 | 95℃, 300 s | 95℃, 30 s | 58℃, 30 s | 30 | 420 | |
| MON1598 | 95℃, 300 s | 95℃, 30 s | 56℃, 30 s | 30 | 420 | |
| GHB614, COT102 | 95℃, 300 s | 95℃, 30 s | 58℃, 30 s | 30 | 600 | |
| 油菜 Rape(Brassica napus L.) | MS1, RF1 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 45 | 420 |
| RF3 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 45 | 600 | |
| RF2 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 120 | |
| GT73 | 94℃, 300 s | 94℃, 30 s | 59℃, 30 s | 40 | 600 | |
| T45 | 94℃, 300 s | 94℃, 30 s | 60℃, 30 s | 30 | 600 | |
| Oxy-235 | 94℃, 300 s | 94℃, 30 s | 61℃, 30 s | 45 | 420 | |
| Topas19/2 | 94℃, 300 s | 95℃, 30 s | 56℃, 30 s | 30 | 120 | |
| MON88302 | 95℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 120 | |
| 73496 | 95℃, 300 s | 95℃, 30 s | 60℃, 30 s | 30 | 120 | |
| 使用频率最高的反应条件 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| 使用频率最高的反应条件占比 | 40/70 | 59/70 | 49/70 | 63/70 | 48/70 | |
Table 2 Comparison of reaction conditions of common PCR identification methods of different crop events
| 物种 Species | 转化体 Events | 预变性 Pre-denaturation | 变性 Denaturation | 退火 Annealing | 72℃延伸 Extension at 72℃/s | 72℃终延伸 Final extension at 72℃/s |
|---|---|---|---|---|---|---|
| 玉米 Maize(Zea mays L.) | 5307, MON87427, 4114, C0010.3.7, GH5112E-117C, Bt506, C0010.1.3, CC-2, DBN9858 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 300 |
| MON89034, C0010.3.1, MON87460, BT176, MON810, 12-5, VCO-Ø1981-5, G1105E-823C | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| BVLA430101, BVLA430101 | 94℃, 300 s | 94℃, 30 s | 60℃, 30 s | 30 | 420 | |
| TC1507, MON863, GA21, NK603, T25, BT10, CBH351, 59122, MON88017, MIR604, IE09S034, DBN9936, C0030.2.4, C0030.2.5 | 95℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| MIR162, 3272 | 95℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| DAS-40278-9, BT11 | 94℃, 300 s | 94℃, 30 s | 56℃, 30 s | 30 | 420 | |
| 大豆 Soybean(Glycine max L.) | MON89788 | 94℃, 180 s | 94℃, 30 s | 58℃, 30 s | 30 | 300 |
| A2704-12, A5547-127 | 94℃, 300 s | 94℃, 30 s | 56℃, 30 s | 30 | 420 | |
| DP356043 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| DP305423, GTS40-3-2, MON87705, MON87769, MON87708 | 94℃, 300 s | 94℃, 30 s | 60℃, 30 s | 30 | 420 | |
| MON87701 | 95℃, 180 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| FG72 | 95℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| SHZD32-1 | 95℃, 300 s | 95℃, 30 s | 58℃, 30 s | 30 | 300 | |
| CV127, DAS68416-4 | 95℃, 300 s | 95℃, 30 s | 58℃, 30 s | 30 | 420 | |
| SYHT0H2 | 95℃, 300 s | 95℃, 30 s | 58℃, 45 s | 45 | 420 | |
| DAS-444Ø6-6 | 95℃, 420 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| 棉花 Cotton(Gossypium hirsutum L.) | MON1445 | 94℃, 300 s | 94℃, 30 s | 55℃, 30 s | 30 | 420 |
| LLcotton25 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 120 | |
| Bt | 94℃, 300 s | 94℃, 30 s | 60℃, 30 s | 30 | 120 | |
| MON88913 | 95℃, 300 s | 95℃, 30 s | 58℃, 30 s | 30 | 420 | |
| MON1598 | 95℃, 300 s | 95℃, 30 s | 56℃, 30 s | 30 | 420 | |
| GHB614, COT102 | 95℃, 300 s | 95℃, 30 s | 58℃, 30 s | 30 | 600 | |
| 油菜 Rape(Brassica napus L.) | MS1, RF1 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 45 | 420 |
| RF3 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 45 | 600 | |
| RF2 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 120 | |
| GT73 | 94℃, 300 s | 94℃, 30 s | 59℃, 30 s | 40 | 600 | |
| T45 | 94℃, 300 s | 94℃, 30 s | 60℃, 30 s | 30 | 600 | |
| Oxy-235 | 94℃, 300 s | 94℃, 30 s | 61℃, 30 s | 45 | 420 | |
| Topas19/2 | 94℃, 300 s | 95℃, 30 s | 56℃, 30 s | 30 | 120 | |
| MON88302 | 95℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 120 | |
| 73496 | 95℃, 300 s | 95℃, 30 s | 60℃, 30 s | 30 | 120 | |
| 使用频率最高的反应条件 | 94℃, 300 s | 94℃, 30 s | 58℃, 30 s | 30 | 420 | |
| 使用频率最高的反应条件占比 | 40/70 | 59/70 | 49/70 | 63/70 | 48/70 | |
| 物种 Species | 转化体 Events | 检出限 LOD | 25 mmol/L MgCl2/µL | 10 mmol/L dNTP/µL | 引物终浓度 Final concentration of primers/(µmol·L-1) | 探针终浓度 Final concentration of probes /(µmol·L-1) | DNA聚合酶 DNA polymerase /(U·µL-1) | 25 mg/L模板 25 mg/L template/µL | 终体积 Final volume /µL |
|---|---|---|---|---|---|---|---|---|---|
| 玉米 Maize(Zea mays L.) | BVLA430101 | - | 2.5 | 0.2 | 0.4 | 0.2 | 0.04 | 2 | 50 |
| 12-5 | 0.05% | 1.2 | 0.6 | 0.8 | 0.4 | 0.04 | 5 | 20 | |
| 4114 | 0.05% | 2.5 | 0.2 | 0.4 | 0.4 | 0.04 | 2.5 | 20 | |
| C0030.2.4, C0030.2.5 | 20拷贝 | 1.5 | 0.25 | 0.4 | 0.2 | 0.025 | 4 | 25 | |
| C0010.3.1 | 9.8拷贝 | 2.5 | 0.2 | 1 | 0.5 | 0.04 | 5 | 20 | |
| CC-2 | 10拷贝 | 2.5 | 0.2 | 1 | 0.5 | 0.04 | 5 | 20 | |
| G1105E-823C | 10拷贝 | 2.5 | 0.2 | 0.4 | 0.4 | 0.04 | 2.5 | 20 | |
| 大豆 Soybean(Glycine max L.) | SHZD32-1 | 0.05% | 1.5 | 0.2 | 0.4 | 0.3 | 0.025 | 2.5 | 25 |
| MON87708 | 0.05% | 1.5 | 0.3 | 0.3 | 0.15 | 0.04 | 2.5 | 20 | |
| SYHT0H2 | 0.05%, Ct≤36 | 2.5 | 0.2 | 0.4 | 0.4 | 0.04 | 2.5 | 20 | |
| MON87701 | 0.05% | 2.5 | 0.3 | 0.6 | 0.4 | 0.04 | 2.5 | 20 | |
| 棉花 Cotton(Gossypium hirsutum L.) | COT102 | - | 1.5 | 0.2 | 0.4 | 0.2 | 0.04 | 2 | 25 |
| 油菜 Rape(Brassica napus L.) | 73496 | 0.03% | 2.5 | 0.2 | 1.0 | 0.5 | 0.04 | 5 | 20 |
| 使用频率最高的扩增体系 The most frequently used amplification system | 2.5 | 0.2 | 0.4 | 0.4 | 0.04 | 2.5 | 20 | ||
| 使用频率最高的扩增体系占比 The percentage of amplification systems with the highest frequency of use | 8/14 | 9/14 | 8/14 | 5/14 | 11/14 | 6/14 | 9/14 | ||
Table 3 Comparison of amplification systems of real-time fluorescent PCR methods for qualitative identification of different crop events
| 物种 Species | 转化体 Events | 检出限 LOD | 25 mmol/L MgCl2/µL | 10 mmol/L dNTP/µL | 引物终浓度 Final concentration of primers/(µmol·L-1) | 探针终浓度 Final concentration of probes /(µmol·L-1) | DNA聚合酶 DNA polymerase /(U·µL-1) | 25 mg/L模板 25 mg/L template/µL | 终体积 Final volume /µL |
|---|---|---|---|---|---|---|---|---|---|
| 玉米 Maize(Zea mays L.) | BVLA430101 | - | 2.5 | 0.2 | 0.4 | 0.2 | 0.04 | 2 | 50 |
| 12-5 | 0.05% | 1.2 | 0.6 | 0.8 | 0.4 | 0.04 | 5 | 20 | |
| 4114 | 0.05% | 2.5 | 0.2 | 0.4 | 0.4 | 0.04 | 2.5 | 20 | |
| C0030.2.4, C0030.2.5 | 20拷贝 | 1.5 | 0.25 | 0.4 | 0.2 | 0.025 | 4 | 25 | |
| C0010.3.1 | 9.8拷贝 | 2.5 | 0.2 | 1 | 0.5 | 0.04 | 5 | 20 | |
| CC-2 | 10拷贝 | 2.5 | 0.2 | 1 | 0.5 | 0.04 | 5 | 20 | |
| G1105E-823C | 10拷贝 | 2.5 | 0.2 | 0.4 | 0.4 | 0.04 | 2.5 | 20 | |
| 大豆 Soybean(Glycine max L.) | SHZD32-1 | 0.05% | 1.5 | 0.2 | 0.4 | 0.3 | 0.025 | 2.5 | 25 |
| MON87708 | 0.05% | 1.5 | 0.3 | 0.3 | 0.15 | 0.04 | 2.5 | 20 | |
| SYHT0H2 | 0.05%, Ct≤36 | 2.5 | 0.2 | 0.4 | 0.4 | 0.04 | 2.5 | 20 | |
| MON87701 | 0.05% | 2.5 | 0.3 | 0.6 | 0.4 | 0.04 | 2.5 | 20 | |
| 棉花 Cotton(Gossypium hirsutum L.) | COT102 | - | 1.5 | 0.2 | 0.4 | 0.2 | 0.04 | 2 | 25 |
| 油菜 Rape(Brassica napus L.) | 73496 | 0.03% | 2.5 | 0.2 | 1.0 | 0.5 | 0.04 | 5 | 20 |
| 使用频率最高的扩增体系 The most frequently used amplification system | 2.5 | 0.2 | 0.4 | 0.4 | 0.04 | 2.5 | 20 | ||
| 使用频率最高的扩增体系占比 The percentage of amplification systems with the highest frequency of use | 8/14 | 9/14 | 8/14 | 5/14 | 11/14 | 6/14 | 9/14 | ||
| 物种 Species | 转化体 Events | 95℃预变性 Pre-denaturation at 95℃/s | 95℃起始变性 Initial denaturation at 95℃/s | 60℃退火延伸Annealing and extension at 60℃/s |
|---|---|---|---|---|
| 玉米 Maize(Zea mays L.) | BVLA430101 | 300 | 5 | 30 |
| 12-5, 4114, C0030.2.4, CC-2, G1105E-823C | 300 | 15 | 60 | |
| C0030.2.5 | 600 | 15 | 60 | |
| C0010.3.1 | 120 | 5 | 34 | |
| 大豆 Soybean(Glycine max L.) | SHZD32-1, SYHT0H2 | 300 | 15 | 60 |
| MON87708, MON87701 | 600 | 15 | 60 | |
| 棉花 Cotton(Gossypium hirsutum L.) | COT102 | 300 | 15 | 60 |
| 油菜 Rape(Brassica napus L.) | 73496 | 120 | 5 | 34 |
| 使用频率最高的反应条件 | 300 | 15 | 60 | |
| 使用频率最高的反应条件占比 | 9/14 | 11/14 | 11/14 | |
Table 4 Comparison of reaction conditions of real-time fluorescent PCR methods for qualitative identification of different crop events
| 物种 Species | 转化体 Events | 95℃预变性 Pre-denaturation at 95℃/s | 95℃起始变性 Initial denaturation at 95℃/s | 60℃退火延伸Annealing and extension at 60℃/s |
|---|---|---|---|---|
| 玉米 Maize(Zea mays L.) | BVLA430101 | 300 | 5 | 30 |
| 12-5, 4114, C0030.2.4, CC-2, G1105E-823C | 300 | 15 | 60 | |
| C0030.2.5 | 600 | 15 | 60 | |
| C0010.3.1 | 120 | 5 | 34 | |
| 大豆 Soybean(Glycine max L.) | SHZD32-1, SYHT0H2 | 300 | 15 | 60 |
| MON87708, MON87701 | 600 | 15 | 60 | |
| 棉花 Cotton(Gossypium hirsutum L.) | COT102 | 300 | 15 | 60 |
| 油菜 Rape(Brassica napus L.) | 73496 | 120 | 5 | 34 |
| 使用频率最高的反应条件 | 300 | 15 | 60 | |
| 使用频率最高的反应条件占比 | 9/14 | 11/14 | 11/14 | |
| 物种 Species | 转化体 Events | 检出限 LOD≤(%) | 定量限 LOQ≤(%) | 靶标 Target gene | 内参 Reference gene | 25 mg/L template/ng | 终体积 Final volume/ µL |
|---|---|---|---|---|---|---|---|
| 引物/探针浓度 Concentration of primers/probe /(µmol·L-1) | |||||||
| 玉米 Maize(Zea mays L.) | TC1507 | - | 0.08 | 0.3/0.3 | 0.15/0.18 | 200 | 25 |
| T25 | 0.045 | 0.09 | 0.4/0.2 | 0.2/0.2 | 200 | 25 | |
| MON89034 | 0.04 | 0.085 | 0.45/0.3 | 0.1/0.16 | 200 | 50/25 | |
| MON88017 | 0.045 | 0.09 | 0.15/0.3 | 0.05/0.16 | 200 | 50 | |
| MON87460 | 0.04 | 0.085 | 0.6/0.3 | 0.25/0.16 | 200 | 50/25 | |
| MON863 | - | - | 0.15/0.15 | 0.05/0.05 | 280 | 50 | |
| MON810 | 0. 1 | 0. 1 | 0.3/0.3 | 0.18/0.18 | 2.3-150 | 25 | |
| MIR604 | 0.045 | 0.09 | 0.6/0.3 | 0.2/0.2 | 200 | 25 | |
| NK603 | 0.05 | 0.10 | 0.15/0.15 | 0.05/0.05 | 300 | 50 | |
| MIR162 | 0.04 | 0.08 | 0.3/0.3 | 0.15/0.2 | 250 | 25 | |
| LY038 | 0.05 | 0.09 | 0.15/0.3 | 0.05/0.16 | 200 | 50/25 | |
| GA21 | 0.04 | 0.04 | 0.9/0.3 | 0.2/0.2 | 250 | 25 | |
| E3272 | 0.04 | 0.09 | 0.9/0.3 | 0.2/0.2 | 250 | 25 | |
| DAS-40278-9 | 0.04 | 0.08 | 0.35/0.3 | 0.15/0.18 | 5 µL | 25 | |
| BT176 | 0.01 | 0.01 | 0.6/0.3 | 0.2/0.2 | 250 | 25 | |
| BT11 | 0.04 | 0.08 | 0.2/0.3 | 0.15/0.3 | 250 | 25 | |
| 98140 | 0.04 | 0.08 | 0.5/0.4 | 0.2/0.15 | 200/100 | 25 | |
| 大豆 Soybean(Glycine max L.) | DP305423 | 0.04 | 0.08 | 0.5/0.55 | 0.22/0.1 | 100 | 25 |
| MON87708, MON87701 | 0.04 | 0.085 | 0.6/0.15 | 0.25/0.05 | 200 | 50 | |
| MON89788 | 0.045 | 0.09 | 0.15/0.15 | 0.05/0.05 | 200 | 50 | |
| DP356043 | 0.04 | 0.08 | 0.75/0.65 | 0.20/0.18 | 100 | 25 | |
| MON87769 | 0.04 | 0.085 | 0.6/0.15 | 0.2/0.05 | 200 | 50 | |
| FG72 | 0.023 | 0.08 | 0.4/0.2 | 0.2/0.2 | 100 | 25 | |
| MON87705 | 0.04 | 0.085 | 0.3/0.15 | 0.15/0.05 | 200 | 50 | |
| CV127 | 0.04 | 0.08 | 0.4/0.15 | 0.1/0.05 | 100 | 25 | |
| A2704-12 | 0.023 | 0.045 | 0.4/0.2 | 0.2/0.2 | 200 | 25 | |
| GTS40-3-2 | 0.045 | 0.09 | 0.15 | 0.05/0.05 | 200 | 50 | |
| A5547-127 | 0.23 | 0.08 | 0.4/0.2 | 0.2/0.2 | 200 | 25 | |
| 油菜 Rape(Brassica napus L.) | DP-073496-4 | 0.04 | 0.08 | 0.6/0.9 | 0.25/0.15 | 100 | 20 |
| GT73 | 0.04 | 0.085 | 0.15/0.2 | 0.05/0.2 | 200 | 50/25 | |
| MON88302 | 0.04 | 0.085 | 0.45/0.3 | 0.2/0.25 | 4 µL | 50 | |
| Ms1, Ms8, RF1, RF2, RF3, Topas19/2 | 0.045 | 0.09 | 0.4/0.2 | 0.2/0.2 | 200 | 25 | |
| T45 | 0.045/0.04 | 0.09/0.085 | 0.4/0.2 | 0.2/0.2 | 200 | 25 | |
| 使用频率最高的扩增体系 The most frequently used amplification system | 0.04 | 0.08 | 0.4/0.2 | 0.2/0.2 | 200 | 25 | |
| 使用频率最高的扩增体系占比 The percentage of amplification systems with the highest frequency of use | 18/40 | 11/40 | 11/40 | 15/40 | 23/40 | 24/50 | |
Table 5 Comparison of amplification system of real-time PCR methods for qualitative identification of different crop events
| 物种 Species | 转化体 Events | 检出限 LOD≤(%) | 定量限 LOQ≤(%) | 靶标 Target gene | 内参 Reference gene | 25 mg/L template/ng | 终体积 Final volume/ µL |
|---|---|---|---|---|---|---|---|
| 引物/探针浓度 Concentration of primers/probe /(µmol·L-1) | |||||||
| 玉米 Maize(Zea mays L.) | TC1507 | - | 0.08 | 0.3/0.3 | 0.15/0.18 | 200 | 25 |
| T25 | 0.045 | 0.09 | 0.4/0.2 | 0.2/0.2 | 200 | 25 | |
| MON89034 | 0.04 | 0.085 | 0.45/0.3 | 0.1/0.16 | 200 | 50/25 | |
| MON88017 | 0.045 | 0.09 | 0.15/0.3 | 0.05/0.16 | 200 | 50 | |
| MON87460 | 0.04 | 0.085 | 0.6/0.3 | 0.25/0.16 | 200 | 50/25 | |
| MON863 | - | - | 0.15/0.15 | 0.05/0.05 | 280 | 50 | |
| MON810 | 0. 1 | 0. 1 | 0.3/0.3 | 0.18/0.18 | 2.3-150 | 25 | |
| MIR604 | 0.045 | 0.09 | 0.6/0.3 | 0.2/0.2 | 200 | 25 | |
| NK603 | 0.05 | 0.10 | 0.15/0.15 | 0.05/0.05 | 300 | 50 | |
| MIR162 | 0.04 | 0.08 | 0.3/0.3 | 0.15/0.2 | 250 | 25 | |
| LY038 | 0.05 | 0.09 | 0.15/0.3 | 0.05/0.16 | 200 | 50/25 | |
| GA21 | 0.04 | 0.04 | 0.9/0.3 | 0.2/0.2 | 250 | 25 | |
| E3272 | 0.04 | 0.09 | 0.9/0.3 | 0.2/0.2 | 250 | 25 | |
| DAS-40278-9 | 0.04 | 0.08 | 0.35/0.3 | 0.15/0.18 | 5 µL | 25 | |
| BT176 | 0.01 | 0.01 | 0.6/0.3 | 0.2/0.2 | 250 | 25 | |
| BT11 | 0.04 | 0.08 | 0.2/0.3 | 0.15/0.3 | 250 | 25 | |
| 98140 | 0.04 | 0.08 | 0.5/0.4 | 0.2/0.15 | 200/100 | 25 | |
| 大豆 Soybean(Glycine max L.) | DP305423 | 0.04 | 0.08 | 0.5/0.55 | 0.22/0.1 | 100 | 25 |
| MON87708, MON87701 | 0.04 | 0.085 | 0.6/0.15 | 0.25/0.05 | 200 | 50 | |
| MON89788 | 0.045 | 0.09 | 0.15/0.15 | 0.05/0.05 | 200 | 50 | |
| DP356043 | 0.04 | 0.08 | 0.75/0.65 | 0.20/0.18 | 100 | 25 | |
| MON87769 | 0.04 | 0.085 | 0.6/0.15 | 0.2/0.05 | 200 | 50 | |
| FG72 | 0.023 | 0.08 | 0.4/0.2 | 0.2/0.2 | 100 | 25 | |
| MON87705 | 0.04 | 0.085 | 0.3/0.15 | 0.15/0.05 | 200 | 50 | |
| CV127 | 0.04 | 0.08 | 0.4/0.15 | 0.1/0.05 | 100 | 25 | |
| A2704-12 | 0.023 | 0.045 | 0.4/0.2 | 0.2/0.2 | 200 | 25 | |
| GTS40-3-2 | 0.045 | 0.09 | 0.15 | 0.05/0.05 | 200 | 50 | |
| A5547-127 | 0.23 | 0.08 | 0.4/0.2 | 0.2/0.2 | 200 | 25 | |
| 油菜 Rape(Brassica napus L.) | DP-073496-4 | 0.04 | 0.08 | 0.6/0.9 | 0.25/0.15 | 100 | 20 |
| GT73 | 0.04 | 0.085 | 0.15/0.2 | 0.05/0.2 | 200 | 50/25 | |
| MON88302 | 0.04 | 0.085 | 0.45/0.3 | 0.2/0.25 | 4 µL | 50 | |
| Ms1, Ms8, RF1, RF2, RF3, Topas19/2 | 0.045 | 0.09 | 0.4/0.2 | 0.2/0.2 | 200 | 25 | |
| T45 | 0.045/0.04 | 0.09/0.085 | 0.4/0.2 | 0.2/0.2 | 200 | 25 | |
| 使用频率最高的扩增体系 The most frequently used amplification system | 0.04 | 0.08 | 0.4/0.2 | 0.2/0.2 | 200 | 25 | |
| 使用频率最高的扩增体系占比 The percentage of amplification systems with the highest frequency of use | 18/40 | 11/40 | 11/40 | 15/40 | 23/40 | 24/50 | |
Fig. 1 Verification of common PCR detection methods of different maize events A: Amplification of a maize reference gene, zSSIIb, in different maize events(positive: events; negative: non-transgenic maize; blank: water control). B: Amplification of event specific in different maize events and non-transgenic maize(negative control 1-8). C: Amplification of event specific in non-transgenic maize(negative control 9-16)and water control.1: 12-5, 2: Bt11, 3: Bt176, 4: Mon810, 5: 5307, 6: Mon87427, 7: C0030.3.5, 8: 4114, 9: C0030.3.1, 10: GH5112E-117C, 11: C0030.2.4, 12: C0030.2.5, 13: CC-2, 14: DBN9501, 15: GA21, and 16: NK603
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