Biotechnology Bulletin ›› 2023, Vol. 39 ›› Issue (3): 290-300.doi: 10.13560/j.cnki.biotech.bull.1985.2022-0919
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ZHANG Zhi-xia(), LI Tian-pei, ZENG Hong, ZHU Xi-xian, YANG Tian-xiong, MA Si-nan, HUANG Lei()
Received:
2022-07-24
Online:
2023-03-26
Published:
2023-04-10
ZHANG Zhi-xia, LI Tian-pei, ZENG Hong, ZHU Xi-xian, YANG Tian-xiong, MA Si-nan, HUANG Lei. Genome Sequencing and Bioinformatics Analysis of Gelidibacter sp. PG-2[J]. Biotechnology Bulletin, 2023, 39(3): 290-300.
名称Name | 数据 Data |
---|---|
原始碱基对Raw bases/bp | 1 218 127 570 |
过滤碱基对Clean bases/bp | 1 174 477 731 |
最长支架 Longest scaffold/bp | 519 035 |
总长度 Total length/bp | 3 850 413 |
GC含量 GC/% | 37.91 |
N50/bp | 257 421 |
基因数目 Gene number | 4 262 |
总长 Total length/bp | 3 850 413 |
GC含量(基因区域)GC%(gene region) | 38.65 |
rRNA | 5 |
16sRNA | 2 |
23sRNA | 1 |
5sRNA | 2 |
tRNA | 37 |
sRNA | 19 |
基因组岛数目 gene iland No. | 9 |
CRISPR-Cas 数目CRISPR-Cas No. | 30 |
Table 1 Genome sequencing and assembly statistics of strain PG-2
名称Name | 数据 Data |
---|---|
原始碱基对Raw bases/bp | 1 218 127 570 |
过滤碱基对Clean bases/bp | 1 174 477 731 |
最长支架 Longest scaffold/bp | 519 035 |
总长度 Total length/bp | 3 850 413 |
GC含量 GC/% | 37.91 |
N50/bp | 257 421 |
基因数目 Gene number | 4 262 |
总长 Total length/bp | 3 850 413 |
GC含量(基因区域)GC%(gene region) | 38.65 |
rRNA | 5 |
16sRNA | 2 |
23sRNA | 1 |
5sRNA | 2 |
tRNA | 37 |
sRNA | 19 |
基因组岛数目 gene iland No. | 9 |
CRISPR-Cas 数目CRISPR-Cas No. | 30 |
基因 Gene | 酶 Enzyme | 菌名 Bacterial name | 最大分 Max score | 总分 Total score | 覆盖率 Query cover/% | 百分比同一性 Percent identity/% | 长度 Length/aa | 登录号 Accession |
---|---|---|---|---|---|---|---|---|
crtI | 八氢番茄红素脱氢酶家族 Phytoene desaturase family protein | Gelidibacter japonicus Bio 7-1 | 1 008 | 1 008 | 100 | 98.38 | 495 | WP_163516639.1 |
lcyB | 番茄红素环化酶 Lycopene cyclase family protein | Gelidibacter japonicus Bio 7-1 | 704 | 704 | 100 | 98.70 | 384 | WP_163516633.1 |
crtZ | 甾醇去饱和酶家族蛋白 Sterol desaturase family protein | Gelidibacter japonicus Bio 7-1 | 226 | 226 | 100 | 99.17 | 149 | WP_163516635.1 |
Table 2 Carotenoid-producing core genes in PG-2
基因 Gene | 酶 Enzyme | 菌名 Bacterial name | 最大分 Max score | 总分 Total score | 覆盖率 Query cover/% | 百分比同一性 Percent identity/% | 长度 Length/aa | 登录号 Accession |
---|---|---|---|---|---|---|---|---|
crtI | 八氢番茄红素脱氢酶家族 Phytoene desaturase family protein | Gelidibacter japonicus Bio 7-1 | 1 008 | 1 008 | 100 | 98.38 | 495 | WP_163516639.1 |
lcyB | 番茄红素环化酶 Lycopene cyclase family protein | Gelidibacter japonicus Bio 7-1 | 704 | 704 | 100 | 98.70 | 384 | WP_163516633.1 |
crtZ | 甾醇去饱和酶家族蛋白 Sterol desaturase family protein | Gelidibacter japonicus Bio 7-1 | 226 | 226 | 100 | 99.17 | 149 | WP_163516635.1 |
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