生物技术通报 ›› 2024, Vol. 40 ›› Issue (11): 169-183.doi: 10.13560/j.cnki.biotech.bull.1985.2024-0128
刘奕君1,2(), 闫伟1, 何禹璇1, 董立明1, 龙丽坤1(), 李飞武1,2()
收稿日期:
2024-02-01
出版日期:
2024-11-26
发布日期:
2024-12-19
通讯作者:
龙丽坤,女,博士,研究员,研究方向:转基因作物安全评价与分子检测;E-mail: Longlikin@126.com;作者简介:
刘奕君,女,硕士研究生,研究方向:生物工程;E-mail: 15750413717@163.com
基金资助:
LIU Yi-jun1,2(), YAN Wei1, HE Yu-xuan1, DONG Li-ming1, LONG Li-kun1(), LI Fei-wu1,2()
Received:
2024-02-01
Published:
2024-11-26
Online:
2024-12-19
摘要:
【目的】 为了确保转基因检测技术的标准化和准确性,开发一种适用于转基因大豆定性定量检测的多靶标质粒标准分子。【方法】 针对13种转基因大豆转化体的分子特征信息,合成了含有多靶标序列的核酸片段,通过将外源片段插入pUC57质粒多克隆位点并经大肠杆菌转化,研制了含有27个转基因大豆靶标序列的质粒DNA标准分子pUC57-SOY。采用普通PCR、单重、双重实时荧光定量PCR(qPCR)检测方法对DNA标准分子pUC57-SOY的靶标特异性进行测试,利用13种大豆转化体进行定量检测适用范围和定值参数性能进行评估。【结果】 在普通PCR检测中,质粒DNA包含的24种检测靶标,均能稳定扩增,且无非特异性扩增产物,表明质粒DNA标准分子pUC57-SOY在实际检测中具有良好的特异性;实时荧光定量PCR(qPCR)方法测试表明,质粒标准分子的不同浓度与靶标扩增效率具有良好的线性相关性。以pUC57-SOY标准分子为阳性参照物,应用标准曲线内插法,实际样品检测结果与预期相一致。【结论】 开发的多靶标质粒标准分子pUC57-SOY表现出符合转基因成分定性定量检测要求的优良性能。在定性检测中,24种检测靶标均能稳定检测出并具有良好的特异性;在定量检测中,可实现一个标准分子对应13种靶标的精准测定。因此,该研究创制的质粒标准分子pUC57-SOY可作为转基因大豆检测的阳性对照品。
刘奕君, 闫伟, 何禹璇, 董立明, 龙丽坤, 李飞武. 转基因大豆多靶标质粒DNA标准分子的研制及应用[J]. 生物技术通报, 2024, 40(11): 169-183.
LIU Yi-jun, YAN Wei, HE Yu-xuan, DONG Li-ming, LONG Li-kun, LI Fei-wu. Development and Application of DNA Standard Molecules of Transgenic Soybean Multi-target Plasmid[J]. Biotechnology Bulletin, 2024, 40(11): 169-183.
图1 质粒DNA标准分子pUC57上检测靶标核苷酸序列的拼接顺序
Fig. 1 Detection of splicing sequence of target nucleotide sequence on DNA standard molecule pUC57 as the standard sample
序号 Serial number | 检测靶标 Detection target | 引物名称 Primer name | 引物序列 Primer sequence(5'-3') | 引物名称 Primer name | 引物序列 Primer sequence(5'-3') | 预期产物大小Expected product size/bp |
---|---|---|---|---|---|---|
1 | lectin | lec-F | GCCCTCTACTCCACCCCCATCC | lec-R | GCCCATCTGCAAGCCTTTTTGTG | 118 |
2 | P-CaMV35S | P-35S-F | GCTCCTACAAATGCCATCATTGC | P-35S-R | GATAGTGGGATTGTGCGTCATCCC | 195 |
3 | T-CaMV35S | T35S-F | GTTTCGCTCATGTGTTGAGC | T35S-R | GGGGATCTGGATTTTAGTACTG | 121 |
4 | T-NOS | T-NOS-F | GAATCCTGTTGCCGGTCTTG | T-NOS-R | TTATCCTAGTTTGCGCGCTA | 180 |
5 | P-FMV35S | FMV35S-F | AAGACATCCACCGAAGACTTA | FMV35S-R | AGGACAGCTCTTTTCCACGTT | 210 |
6 | T-E9-3' | E9 3'-F | TTATGGCATTGGGAAAACTGT | E9 3'-R | GGTCATTAGAGGCCACGATT | 273 |
7 | NptII | npt II-F | ACTGGGCACAACAGACAATCG | npt II-R | GCATCAGCCATGATGGATACTTT | 289 |
8 | bar | bar-F | GAAGGCACGCAACGCCTACGA | bar-F | CCAGAAACCCACGTCATGCCA | 262 |
9 | pat | pat-F | GAAGGCTAGGAACGCTTACGA | pat-R | CCAAAAACCAACATCATGCCA | 262 |
10 | cry1Ac | cry1Ac-F | ACCGGTTACACTCCCATCGACATC | cry1Ac-R | GGCGGAGTTCATGTCGTTGAA | 330 |
11 | CP4-epsps | CP4-F | ACGGTGAYCGTCTTCCMGTTAC | CP4-R | GAACAAGCARGGCMGCAACCA | 333 |
12 | MON87708 | 87708-F | CCATCATACTCATTGCTGATCCA | 87708-R | AGCCAATCAATCTCAGAACTGTC | 233 |
13 | MON87701 | 87701-F | GCACGCTTAGTGTGTGTGTCAAAC | 87701-R | GGATCCGTCGACCTGCAGTTAAC | 150 |
14 | MON87705 | 87705-F | CGCCAAATCGTGAAGTTTCTCATCT | 87705-R | CAGTGATAACAACACCCTGAGTCT | 318 |
15 | MON87769 | 87769-F | CCGGACATGAAGCCATTTAC | 87769-R | TCCTTGGAGGTCGTCTCATT | 298 |
16 | A2704[ | A2704-F | TGAGGGGGTCAAAGACCAAG | A2704-R | CCAGTCTTTACGGCGAGT | 239 |
17 | DAS68416 | 68416-F | CCGCTACTTGCTCTTGTCGT | 68416-R | CGGTTAGGATCCGGTGAGTA | 221 |
18 | CV127[ | CV127-F | CCTTCGCCGTTTAGTGTATAGG | CV127-R | AGCAGGTTCGTTTAAGGATGAA | 238 |
19 | GTS40-3-2[ | GTS40-F | TTCAAACCCTTCAATTTAACCGAT | GTS40-R | AAGGATAGTGGGATTGTGCGTC | 370 |
20 | A5547[ | A5547-F | TGAGGGGGTCAAAGACCAAG | A5547-R | CCAGTCTTTACGGCGAGT | 317 |
21 | 356043[ | 356043-F | CTTTTGCCCGAGGTCGTTAG | 356043-R | GCCCTTTGGTCTTCTGAGACTG | 145 |
22 | FG72 | FG72-F | TCGGGCTGCAGGAATTAATGT | FG72-R | TTTGGAGCAATAAACATGTGATAGC | 150 |
23 | MON89788[ | 89788-F | CTGCTCCACTCTTCCTTT | 89788-R | AGACTCTGTACCCTGACCT | 223 |
24 | 305423[ | 305423-F | CGTCAGGAATAAAGGAAGTACAGTA | 305423-R | GCCCTAAAGGATGCGTATAGAGT | 235 |
25 | zSSIIb | zSSIIb-F | CGGTGGATGCTAAGGCTGATG | zSSIIb-R | AAAGGGCCAGGTTCATTATCCTC | 88 |
26 | SPS | SPS-F | TTGCGCCTGAACGGATAT | SPS-R | GGAGAAGCACTGGACGAGG | 277 |
27 | HMG | HMG-F | TCCTTCCGTTTCCTCGCC | HMG-R | TTCCACGCCCTCTCCGCT | 206 |
28 | Sad1 | Sad1-F | TGGCCTCTAATCATTGTTATGATG | Sad1-R | TTGAGGTGAGTCAGAATGTTGTTC | 282 |
29 | MON810[ | MON810-F | CAAGTGTGCCCACCACAGC | MON810-R | GCAAGCAAATTCGGAAATGAA | 106 |
30 | MON863[ | MON863-F | GCACTCAAAGACCTGGCGAATGA | MON863-R | CCATCTTTGGGACCACTGTCG | 411 |
31 | Bt11[ | Bt11-F | GCGGAACCCCTATTTGTTTA | Bt11-R | CAAGAAATGGTCTCCACCAAA | 93 |
32 | MON89034[ | 89034-F | GCTGCTACTACTATCAAGCCAATA | 89034-R | TGCTTTCGCCTATAAATACGAC | 207 |
33 | MIR604[ | MIR604-F | TCGCGCGCGGTGTCATCTATG | MIR604-R | CGCGACACACCTCGTTAGTTAA | 142 |
34 | TT51[ | TT51-F | AGCAGAACTTTAACCCCCGAA | TT51-R | AGAGCCTCGTTGGATTTCTTACAT | 274 |
35 | KF6-1 | KF6-1-F | CGACAAAAGATCAGGATTTGGG | KF6-1-R | GTTTGGAGTTTAAGAGCGA | 303 |
36 | MON1445[ | MON1445-F | AATGCTGGATTTTCTGCCTGTG | MON1445-R | TCCAAAAGTCATGCATCATTTCTCA | 99 |
37 | MON15985[ | MON15985-F | ATTTGATGCACTATGTCTTCGTCTA | MON15985-R | CAATGGAATCCGAGGAGGT | 175 |
38 | GT73[ | GT73-F | AATAACGCTGCGGACATCTA | GT73-R | CAGCAACATTCTCTGTCAACAA | 204 |
39 | T45[ | T45-F | TCCCATTTATTTACGGTCAC | T45-R | CCATGGGAATTCATTTACAA | 233 |
表1 常规PCR检测靶标及使用的引物信息
Table 1 Routine PCR detection targets and used primers
序号 Serial number | 检测靶标 Detection target | 引物名称 Primer name | 引物序列 Primer sequence(5'-3') | 引物名称 Primer name | 引物序列 Primer sequence(5'-3') | 预期产物大小Expected product size/bp |
---|---|---|---|---|---|---|
1 | lectin | lec-F | GCCCTCTACTCCACCCCCATCC | lec-R | GCCCATCTGCAAGCCTTTTTGTG | 118 |
2 | P-CaMV35S | P-35S-F | GCTCCTACAAATGCCATCATTGC | P-35S-R | GATAGTGGGATTGTGCGTCATCCC | 195 |
3 | T-CaMV35S | T35S-F | GTTTCGCTCATGTGTTGAGC | T35S-R | GGGGATCTGGATTTTAGTACTG | 121 |
4 | T-NOS | T-NOS-F | GAATCCTGTTGCCGGTCTTG | T-NOS-R | TTATCCTAGTTTGCGCGCTA | 180 |
5 | P-FMV35S | FMV35S-F | AAGACATCCACCGAAGACTTA | FMV35S-R | AGGACAGCTCTTTTCCACGTT | 210 |
6 | T-E9-3' | E9 3'-F | TTATGGCATTGGGAAAACTGT | E9 3'-R | GGTCATTAGAGGCCACGATT | 273 |
7 | NptII | npt II-F | ACTGGGCACAACAGACAATCG | npt II-R | GCATCAGCCATGATGGATACTTT | 289 |
8 | bar | bar-F | GAAGGCACGCAACGCCTACGA | bar-F | CCAGAAACCCACGTCATGCCA | 262 |
9 | pat | pat-F | GAAGGCTAGGAACGCTTACGA | pat-R | CCAAAAACCAACATCATGCCA | 262 |
10 | cry1Ac | cry1Ac-F | ACCGGTTACACTCCCATCGACATC | cry1Ac-R | GGCGGAGTTCATGTCGTTGAA | 330 |
11 | CP4-epsps | CP4-F | ACGGTGAYCGTCTTCCMGTTAC | CP4-R | GAACAAGCARGGCMGCAACCA | 333 |
12 | MON87708 | 87708-F | CCATCATACTCATTGCTGATCCA | 87708-R | AGCCAATCAATCTCAGAACTGTC | 233 |
13 | MON87701 | 87701-F | GCACGCTTAGTGTGTGTGTCAAAC | 87701-R | GGATCCGTCGACCTGCAGTTAAC | 150 |
14 | MON87705 | 87705-F | CGCCAAATCGTGAAGTTTCTCATCT | 87705-R | CAGTGATAACAACACCCTGAGTCT | 318 |
15 | MON87769 | 87769-F | CCGGACATGAAGCCATTTAC | 87769-R | TCCTTGGAGGTCGTCTCATT | 298 |
16 | A2704[ | A2704-F | TGAGGGGGTCAAAGACCAAG | A2704-R | CCAGTCTTTACGGCGAGT | 239 |
17 | DAS68416 | 68416-F | CCGCTACTTGCTCTTGTCGT | 68416-R | CGGTTAGGATCCGGTGAGTA | 221 |
18 | CV127[ | CV127-F | CCTTCGCCGTTTAGTGTATAGG | CV127-R | AGCAGGTTCGTTTAAGGATGAA | 238 |
19 | GTS40-3-2[ | GTS40-F | TTCAAACCCTTCAATTTAACCGAT | GTS40-R | AAGGATAGTGGGATTGTGCGTC | 370 |
20 | A5547[ | A5547-F | TGAGGGGGTCAAAGACCAAG | A5547-R | CCAGTCTTTACGGCGAGT | 317 |
21 | 356043[ | 356043-F | CTTTTGCCCGAGGTCGTTAG | 356043-R | GCCCTTTGGTCTTCTGAGACTG | 145 |
22 | FG72 | FG72-F | TCGGGCTGCAGGAATTAATGT | FG72-R | TTTGGAGCAATAAACATGTGATAGC | 150 |
23 | MON89788[ | 89788-F | CTGCTCCACTCTTCCTTT | 89788-R | AGACTCTGTACCCTGACCT | 223 |
24 | 305423[ | 305423-F | CGTCAGGAATAAAGGAAGTACAGTA | 305423-R | GCCCTAAAGGATGCGTATAGAGT | 235 |
25 | zSSIIb | zSSIIb-F | CGGTGGATGCTAAGGCTGATG | zSSIIb-R | AAAGGGCCAGGTTCATTATCCTC | 88 |
26 | SPS | SPS-F | TTGCGCCTGAACGGATAT | SPS-R | GGAGAAGCACTGGACGAGG | 277 |
27 | HMG | HMG-F | TCCTTCCGTTTCCTCGCC | HMG-R | TTCCACGCCCTCTCCGCT | 206 |
28 | Sad1 | Sad1-F | TGGCCTCTAATCATTGTTATGATG | Sad1-R | TTGAGGTGAGTCAGAATGTTGTTC | 282 |
29 | MON810[ | MON810-F | CAAGTGTGCCCACCACAGC | MON810-R | GCAAGCAAATTCGGAAATGAA | 106 |
30 | MON863[ | MON863-F | GCACTCAAAGACCTGGCGAATGA | MON863-R | CCATCTTTGGGACCACTGTCG | 411 |
31 | Bt11[ | Bt11-F | GCGGAACCCCTATTTGTTTA | Bt11-R | CAAGAAATGGTCTCCACCAAA | 93 |
32 | MON89034[ | 89034-F | GCTGCTACTACTATCAAGCCAATA | 89034-R | TGCTTTCGCCTATAAATACGAC | 207 |
33 | MIR604[ | MIR604-F | TCGCGCGCGGTGTCATCTATG | MIR604-R | CGCGACACACCTCGTTAGTTAA | 142 |
34 | TT51[ | TT51-F | AGCAGAACTTTAACCCCCGAA | TT51-R | AGAGCCTCGTTGGATTTCTTACAT | 274 |
35 | KF6-1 | KF6-1-F | CGACAAAAGATCAGGATTTGGG | KF6-1-R | GTTTGGAGTTTAAGAGCGA | 303 |
36 | MON1445[ | MON1445-F | AATGCTGGATTTTCTGCCTGTG | MON1445-R | TCCAAAAGTCATGCATCATTTCTCA | 99 |
37 | MON15985[ | MON15985-F | ATTTGATGCACTATGTCTTCGTCTA | MON15985-R | CAATGGAATCCGAGGAGGT | 175 |
38 | GT73[ | GT73-F | AATAACGCTGCGGACATCTA | GT73-R | CAGCAACATTCTCTGTCAACAA | 204 |
39 | T45[ | T45-F | TCCCATTTATTTACGGTCAC | T45-R | CCATGGGAATTCATTTACAA | 233 |
序号 Serial number | 检测靶标 Detection target | 引物/探针名称 Primer/Probe name | 引物序列Primer sequence(5'-3') | 预期产物大小 Expected product size/bp |
---|---|---|---|---|
1 | lectin | lec-QF | TCCACCCCCATCCACATTT | 81 |
lec-QR | GGCATAGAAGGTGAAGTTGAAGGA | |||
lec-QP | HEX-AACCGGTAGCGTTGCCAGCTTCG-BHQ1 | |||
2 | CV127 | 127-QF | AACAGAAGTTTCCGTTGAGCTTTAAGAC | 88 |
127-QR | CATTCGTAGCTCGGATCGTGTAC | |||
127-QP | FAM-TTTGGGGAAGCTGTCCCATGCCC-BHQ1 | |||
3 | GTS40-3-2[ | GTS-QF | TTCATTCAAAATAAGATCATACATACAGGTT | 84 |
GTS-QR | GGCATTTGTAGGAGCCACCTT | |||
GTS-QP | FAM-CCTTTTCCATTTGGG-MGBNFQ | |||
4 | MON87701[ | 87701-QF | CGTTTCCCGCCTTCAGTTTAAA | 89 |
87701-QR | TGGTGATATGAAGATACATGCTTAGCAT | |||
87701-QP | FAM-TCAGTGTTTGACACACACACTAAGCGTGCC-BHQ1 | |||
5 | MON87708 | 87708-QF | TCATACTCATTGCTGATCCATGTAG | 91 |
87708-QR | AGAACAAATTAACGAAAAGACAGAACG | |||
87708-QP | FAM-TCCCGGACTTTAGCTCAAAATGCATGTA-BHQ1 | |||
6 | MON87705 | 87705-QF | TTCCCGGACATGAAGCCATTTAC | 86 |
87705-QR | ACAACGGTGCCTTGGCCCAAAG | |||
87705-QP | FAM-AAGAGACTCAGGGTGTTGTTATCACTGCGG-BHQ1 | |||
7 | MON87769 | 87769-QF | CATACTCATTGCTGATCCATGTAGA | 87 |
87769-QR | GCAAGTTGCTCGTGAAGTT | |||
87769-QP | JOE-CCCGGACATGAAGCCATTTACAATTGAC-BHQ1 | |||
8 | MON89788[ | 89788-QF | TCCCGCTCTAGCGCTTCAAT | 139 |
89788-QR | TCGAGCAGGACCTGCAGAA | |||
89788-QP | JOE-CTGAAGGCGGGAAACGACAATCTG-BHQ1 | |||
9 | 305423 | 305423-QF | CGTGTTCTCTTTTTGGCTAGC | 93 |
305423-QR | GTGACCAATGAATACATAACACAAACTA | |||
305423-QP | FAM-TGACACAAATGATTTTCATACAAAAGTCGAGA-BHQ1 | |||
10 | 356043 | 356043-QF | GTCGAATAGGCTAGGTTTACGAAAAA | 99 |
356043-QR | TTTGATATTCTTGGAGTAGACGAGAGTGT | |||
356043-QP | JOE-CTCTAGAGATCCGTCAACATGGTGGAGCAC-BHQ1 | |||
11 | FG72 | FG72-QF | AGATTTGATCGGGCTGCAGG | 70 |
FG72-QR | GCACGTATTGATGACCGCATTA | |||
FG72-QP | HEX-AATGTGGTTCATCCGTCTT-MGBNFQ | |||
12 | A2704 | A2704-QF | GCAAAAAAGCGGTTAGCTCCT | 64 |
A2704-QR | ATTCAGGCTGCGCAACTGTT | |||
A2704-QP | HEX-CGGTCCTCCGATCGCCCTTCC-BHQ1 | |||
13 | A5547[ | A5547-QF | GCTATTTGGTGGCATTTTTCCA | 75 |
A5574-QR | CACTGCGGCCAACTTACTTCT | |||
A5547-QP | FAM-CCGCAATGTCATACCGTCATCGTTGT-BHQ1 | |||
14 | DAS68416 | 68416-QF | GTACATTAAAAACGTCCGCAATGTGT | 130 |
68416-QR | GTTTAAGAATTAGTTCTTACAGTTTATTGTTAG | |||
68416-QP | FAM-TTAAGTTGTCTAAGCGTCAATA-MGBNFQ |
表2 实时荧光PCR检测靶标及使用的引物探针信息
Table 2 Information of real-time fluorescent PCR detection targets and used primers
序号 Serial number | 检测靶标 Detection target | 引物/探针名称 Primer/Probe name | 引物序列Primer sequence(5'-3') | 预期产物大小 Expected product size/bp |
---|---|---|---|---|
1 | lectin | lec-QF | TCCACCCCCATCCACATTT | 81 |
lec-QR | GGCATAGAAGGTGAAGTTGAAGGA | |||
lec-QP | HEX-AACCGGTAGCGTTGCCAGCTTCG-BHQ1 | |||
2 | CV127 | 127-QF | AACAGAAGTTTCCGTTGAGCTTTAAGAC | 88 |
127-QR | CATTCGTAGCTCGGATCGTGTAC | |||
127-QP | FAM-TTTGGGGAAGCTGTCCCATGCCC-BHQ1 | |||
3 | GTS40-3-2[ | GTS-QF | TTCATTCAAAATAAGATCATACATACAGGTT | 84 |
GTS-QR | GGCATTTGTAGGAGCCACCTT | |||
GTS-QP | FAM-CCTTTTCCATTTGGG-MGBNFQ | |||
4 | MON87701[ | 87701-QF | CGTTTCCCGCCTTCAGTTTAAA | 89 |
87701-QR | TGGTGATATGAAGATACATGCTTAGCAT | |||
87701-QP | FAM-TCAGTGTTTGACACACACACTAAGCGTGCC-BHQ1 | |||
5 | MON87708 | 87708-QF | TCATACTCATTGCTGATCCATGTAG | 91 |
87708-QR | AGAACAAATTAACGAAAAGACAGAACG | |||
87708-QP | FAM-TCCCGGACTTTAGCTCAAAATGCATGTA-BHQ1 | |||
6 | MON87705 | 87705-QF | TTCCCGGACATGAAGCCATTTAC | 86 |
87705-QR | ACAACGGTGCCTTGGCCCAAAG | |||
87705-QP | FAM-AAGAGACTCAGGGTGTTGTTATCACTGCGG-BHQ1 | |||
7 | MON87769 | 87769-QF | CATACTCATTGCTGATCCATGTAGA | 87 |
87769-QR | GCAAGTTGCTCGTGAAGTT | |||
87769-QP | JOE-CCCGGACATGAAGCCATTTACAATTGAC-BHQ1 | |||
8 | MON89788[ | 89788-QF | TCCCGCTCTAGCGCTTCAAT | 139 |
89788-QR | TCGAGCAGGACCTGCAGAA | |||
89788-QP | JOE-CTGAAGGCGGGAAACGACAATCTG-BHQ1 | |||
9 | 305423 | 305423-QF | CGTGTTCTCTTTTTGGCTAGC | 93 |
305423-QR | GTGACCAATGAATACATAACACAAACTA | |||
305423-QP | FAM-TGACACAAATGATTTTCATACAAAAGTCGAGA-BHQ1 | |||
10 | 356043 | 356043-QF | GTCGAATAGGCTAGGTTTACGAAAAA | 99 |
356043-QR | TTTGATATTCTTGGAGTAGACGAGAGTGT | |||
356043-QP | JOE-CTCTAGAGATCCGTCAACATGGTGGAGCAC-BHQ1 | |||
11 | FG72 | FG72-QF | AGATTTGATCGGGCTGCAGG | 70 |
FG72-QR | GCACGTATTGATGACCGCATTA | |||
FG72-QP | HEX-AATGTGGTTCATCCGTCTT-MGBNFQ | |||
12 | A2704 | A2704-QF | GCAAAAAAGCGGTTAGCTCCT | 64 |
A2704-QR | ATTCAGGCTGCGCAACTGTT | |||
A2704-QP | HEX-CGGTCCTCCGATCGCCCTTCC-BHQ1 | |||
13 | A5547[ | A5547-QF | GCTATTTGGTGGCATTTTTCCA | 75 |
A5574-QR | CACTGCGGCCAACTTACTTCT | |||
A5547-QP | FAM-CCGCAATGTCATACCGTCATCGTTGT-BHQ1 | |||
14 | DAS68416 | 68416-QF | GTACATTAAAAACGTCCGCAATGTGT | 130 |
68416-QR | GTTTAAGAATTAGTTCTTACAGTTTATTGTTAG | |||
68416-QP | FAM-TTAAGTTGTCTAAGCGTCAATA-MGBNFQ |
图2 质粒DNA标准分子pUC57-SOY常规PCR测试结果 1:空白对照;2:非转基因对照;3:阳性对照;4:pUC57-SOY,下同
Fig. 2 Routine PCR test results of plasmid standard molecule pUC57-SOY 1: Blank control. 2: Non-transgenic control. 3: Positive control. 4: pUC57-SOY. The same below
检测靶标 Detection target | 拷贝数浓度Copy number concentration/(copies·μL-1) | Ct值Ct value | Ct平均值 Mean of Ct value | SD | |||
---|---|---|---|---|---|---|---|
重复1 Repeat 1 | 重复2 Repeat 2 | 重复3 Repeat 3 | 重复4 Repeat 4 | ||||
lectin | 8×106 | 16.33 | 16.24 | 16.21 | 16.15 | 16.23 | 0.07 |
8×105 | 19.49 | 19.47 | 19.44 | 19.47 | 19.47 | 0.02 | |
8×104 | 23.00 | 22.85 | 22.87 | 22.80 | 22.88 | 0.09 | |
8×103 | 26.12 | 26.13 | 26.09 | 26.02 | 26.09 | 0.05 | |
8×102 | 29.10 | 29.09 | 29.07 | 29.13 | 29.10 | 0.02 | |
CV127 | 8×106 | 16.49 | 16.42 | 16.36 | 16.34 | 16.40 | 0.07 |
8×105 | 19.81 | 19.71 | 19.77 | 19.80 | 19.77 | 0.04 | |
8×104 | 23.32 | 23.18 | 23.07 | 23.05 | 23.16 | 0.12 | |
8×103 | 26.54 | 26.45 | 26.44 | 26.40 | 26.46 | 0.06 | |
8×102 | 29.75 | 29.47 | 29.52 | 29.71 | 29.61 | 0.14 | |
GTS40-3-2 | 8×106 | 16.50 | 16.33 | 16.41 | 16.33 | 16.39 | 0.08 |
8×105 | 19.69 | 19.68 | 19.64 | 19.63 | 19.66 | 0.03 | |
8×104 | 23.00 | 22.94 | 22.96 | 22.89 | 22.95 | 0.05 | |
8×103 | 26.15 | 26.15 | 26.04 | 26.11 | 26.11 | 0.05 | |
8×102 | 29.12 | 29.29 | 29.18 | 29.26 | 29.21 | 0.08 | |
MON87701 | 8×106 | 16.52 | 16.55 | 16.46 | 16.57 | 16.53 | 0.05 |
8×105 | 19.92 | 19.86 | 19.85 | 19.82 | 19.86 | 0.04 | |
8×104 | 23.29 | 23.27 | 23.18 | 23.22 | 23.24 | 0.05 | |
8×103 | 26.55 | 26.42 | 26.49 | 26.42 | 26.47 | 0.06 | |
8×102 | 29.79 | 29.52 | 29.61 | 29.70 | 29.66 | 0.12 | |
MON87705 | 8×106 | 16.42 | 16.38 | 16.39 | 16.35 | 16.39 | 0.03 |
8×105 | 19.77 | 19.71 | 19.72 | 19.81 | 19.75 | 0.05 | |
8×104 | 23.37 | 23.19 | 23.25 | 23.11 | 23.23 | 0.11 | |
8×103 | 26.51 | 26.42 | 26.44 | 26.44 | 26.45 | 0.04 | |
8×102 | 29.78 | 29.57 | 29.56 | 29.72 | 29.66 | 0.11 | |
MON87769 | 8×106 | 16.55 | 16.48 | 16.49 | 16.40 | 16.48 | 0.06 |
8×105 | 19.84 | 19.83 | 19.88 | 19.79 | 19.84 | 0.04 | |
8×104 | 23.22 | 23.25 | 23.19 | 23.17 | 23.21 | 0.03 | |
8×103 | 26.60 | 26.52 | 26.48 | 26.52 | 26.53 | 0.05 | |
8×102 | 29.70 | 29.75 | 29.62 | 29.82 | 29.72 | 0.08 | |
MON89788 | 8×106 | 16.49 | 16.42 | 16.36 | 16.34 | 16.40 | 0.07 |
8×105 | 19.81 | 19.71 | 19.77 | 19.80 | 19.77 | 0.04 | |
8×104 | 23.32 | 23.18 | 23.07 | 23.05 | 23.16 | 0.12 | |
8×103 | 26.54 | 26.45 | 26.44 | 26.40 | 26.46 | 0.06 | |
8×102 | 29.75 | 29.47 | 29.52 | 29.71 | 29.61 | 0.14 | |
305423 | 8×106 | 16.44 | 16.48 | 16.39 | 16.42 | 16.43 | 0.04 |
8×105 | 19.73 | 19.77 | 19.79 | 19.81 | 19.78 | 0.03 | |
8×104 | 23.25 | 23.28 | 23.17 | 23.13 | 23.21 | 0.07 | |
8×103 | 26.48 | 26.44 | 26.42 | 26.47 | 26.45 | 0.03 | |
8×102 | 29.69 | 29.54 | 29.59 | 29.67 | 29.62 | 0.07 | |
356043 | 8×106 | 16.45 | 16.52 | 16.42 | 16.44 | 16.46 | 0.04 |
8×105 | 19.72 | 19.78 | 19.79 | 19.82 | 19.78 | 0.04 | |
8×104 | 23.22 | 23.14 | 23.17 | 23.12 | 23.16 | 0.04 | |
8×103 | 26.51 | 26.47 | 26.48 | 26.42 | 26.47 | 0.04 | |
8×102 | 29.52 | 29.72 | 29.60 | 29.68 | 29.63 | 0.09 | |
FG72 | 8×106 | 16.47 | 16.40 | 16.42 | 16.36 | 16.41 | 0.05 |
8×105 | 19.77 | 19.68 | 19.69 | 19.73 | 19.72 | 0.04 | |
8×104 | 23.22 | 23.08 | 23.11 | 23.05 | 23.12 | 0.07 | |
8×103 | 26.45 | 26.49 | 26.41 | 26.42 | 26.44 | 0.04 | |
8×102 | 29.68 | 29.47 | 29.49 | 29.73 | 29.59 | 0.13 | |
A2704 | 8×106 | 16.38 | 16.41 | 16.48 | 16.42 | 16.42 | 0.04 |
8×105 | 19.61 | 19.65 | 19.67 | 19.62 | 19.64 | 0.03 | |
8×104 | 23.11 | 23.05 | 23.02 | 22.94 | 23.03 | 0.07 | |
8×103 | 26.36 | 26.46 | 26.52 | 26.43 | 26.44 | 0.07 | |
8×102 | 29.59 | 29.57 | 29.52 | 29.60 | 29.57 | 0.04 | |
A5547 | 8×106 | 16.44 | 16.49 | 16.38 | 16.35 | 16.42 | 0.06 |
8×105 | 19.88 | 19.77 | 19.79 | 19.78 | 19.81 | 0.05 | |
8×104 | 23.23 | 23.28 | 23.19 | 23.12 | 23.21 | 0.07 | |
8×103 | 26.45 | 26.54 | 26.48 | 26.42 | 26.47 | 0.05 | |
8×102 | 29.57 | 29.74 | 29.52 | 29.72 | 29.64 | 0.11 | |
DAS68416 | 8×106 | 16.50 | 16.44 | 16.39 | 16.33 | 16.42 | 0.07 |
8×105 | 19.84 | 19.82 | 19.87 | 19.81 | 19.84 | 0.03 | |
8×104 | 23.42 | 23.24 | 23.07 | 23.01 | 23.19 | 0.18 | |
8×103 | 26.49 | 26.54 | 26.45 | 26.48 | 26.49 | 0.04 | |
8×102 | 29.55 | 29.42 | 29.57 | 29.68 | 29.56 | 0.11 |
表3 质粒DNA标准分子pUC57-SOY的荧光PCR扩增结果
Table 3 Results of fluorescent PCR amplification of plasmid DNA standard molecule pUC57-SOY
检测靶标 Detection target | 拷贝数浓度Copy number concentration/(copies·μL-1) | Ct值Ct value | Ct平均值 Mean of Ct value | SD | |||
---|---|---|---|---|---|---|---|
重复1 Repeat 1 | 重复2 Repeat 2 | 重复3 Repeat 3 | 重复4 Repeat 4 | ||||
lectin | 8×106 | 16.33 | 16.24 | 16.21 | 16.15 | 16.23 | 0.07 |
8×105 | 19.49 | 19.47 | 19.44 | 19.47 | 19.47 | 0.02 | |
8×104 | 23.00 | 22.85 | 22.87 | 22.80 | 22.88 | 0.09 | |
8×103 | 26.12 | 26.13 | 26.09 | 26.02 | 26.09 | 0.05 | |
8×102 | 29.10 | 29.09 | 29.07 | 29.13 | 29.10 | 0.02 | |
CV127 | 8×106 | 16.49 | 16.42 | 16.36 | 16.34 | 16.40 | 0.07 |
8×105 | 19.81 | 19.71 | 19.77 | 19.80 | 19.77 | 0.04 | |
8×104 | 23.32 | 23.18 | 23.07 | 23.05 | 23.16 | 0.12 | |
8×103 | 26.54 | 26.45 | 26.44 | 26.40 | 26.46 | 0.06 | |
8×102 | 29.75 | 29.47 | 29.52 | 29.71 | 29.61 | 0.14 | |
GTS40-3-2 | 8×106 | 16.50 | 16.33 | 16.41 | 16.33 | 16.39 | 0.08 |
8×105 | 19.69 | 19.68 | 19.64 | 19.63 | 19.66 | 0.03 | |
8×104 | 23.00 | 22.94 | 22.96 | 22.89 | 22.95 | 0.05 | |
8×103 | 26.15 | 26.15 | 26.04 | 26.11 | 26.11 | 0.05 | |
8×102 | 29.12 | 29.29 | 29.18 | 29.26 | 29.21 | 0.08 | |
MON87701 | 8×106 | 16.52 | 16.55 | 16.46 | 16.57 | 16.53 | 0.05 |
8×105 | 19.92 | 19.86 | 19.85 | 19.82 | 19.86 | 0.04 | |
8×104 | 23.29 | 23.27 | 23.18 | 23.22 | 23.24 | 0.05 | |
8×103 | 26.55 | 26.42 | 26.49 | 26.42 | 26.47 | 0.06 | |
8×102 | 29.79 | 29.52 | 29.61 | 29.70 | 29.66 | 0.12 | |
MON87705 | 8×106 | 16.42 | 16.38 | 16.39 | 16.35 | 16.39 | 0.03 |
8×105 | 19.77 | 19.71 | 19.72 | 19.81 | 19.75 | 0.05 | |
8×104 | 23.37 | 23.19 | 23.25 | 23.11 | 23.23 | 0.11 | |
8×103 | 26.51 | 26.42 | 26.44 | 26.44 | 26.45 | 0.04 | |
8×102 | 29.78 | 29.57 | 29.56 | 29.72 | 29.66 | 0.11 | |
MON87769 | 8×106 | 16.55 | 16.48 | 16.49 | 16.40 | 16.48 | 0.06 |
8×105 | 19.84 | 19.83 | 19.88 | 19.79 | 19.84 | 0.04 | |
8×104 | 23.22 | 23.25 | 23.19 | 23.17 | 23.21 | 0.03 | |
8×103 | 26.60 | 26.52 | 26.48 | 26.52 | 26.53 | 0.05 | |
8×102 | 29.70 | 29.75 | 29.62 | 29.82 | 29.72 | 0.08 | |
MON89788 | 8×106 | 16.49 | 16.42 | 16.36 | 16.34 | 16.40 | 0.07 |
8×105 | 19.81 | 19.71 | 19.77 | 19.80 | 19.77 | 0.04 | |
8×104 | 23.32 | 23.18 | 23.07 | 23.05 | 23.16 | 0.12 | |
8×103 | 26.54 | 26.45 | 26.44 | 26.40 | 26.46 | 0.06 | |
8×102 | 29.75 | 29.47 | 29.52 | 29.71 | 29.61 | 0.14 | |
305423 | 8×106 | 16.44 | 16.48 | 16.39 | 16.42 | 16.43 | 0.04 |
8×105 | 19.73 | 19.77 | 19.79 | 19.81 | 19.78 | 0.03 | |
8×104 | 23.25 | 23.28 | 23.17 | 23.13 | 23.21 | 0.07 | |
8×103 | 26.48 | 26.44 | 26.42 | 26.47 | 26.45 | 0.03 | |
8×102 | 29.69 | 29.54 | 29.59 | 29.67 | 29.62 | 0.07 | |
356043 | 8×106 | 16.45 | 16.52 | 16.42 | 16.44 | 16.46 | 0.04 |
8×105 | 19.72 | 19.78 | 19.79 | 19.82 | 19.78 | 0.04 | |
8×104 | 23.22 | 23.14 | 23.17 | 23.12 | 23.16 | 0.04 | |
8×103 | 26.51 | 26.47 | 26.48 | 26.42 | 26.47 | 0.04 | |
8×102 | 29.52 | 29.72 | 29.60 | 29.68 | 29.63 | 0.09 | |
FG72 | 8×106 | 16.47 | 16.40 | 16.42 | 16.36 | 16.41 | 0.05 |
8×105 | 19.77 | 19.68 | 19.69 | 19.73 | 19.72 | 0.04 | |
8×104 | 23.22 | 23.08 | 23.11 | 23.05 | 23.12 | 0.07 | |
8×103 | 26.45 | 26.49 | 26.41 | 26.42 | 26.44 | 0.04 | |
8×102 | 29.68 | 29.47 | 29.49 | 29.73 | 29.59 | 0.13 | |
A2704 | 8×106 | 16.38 | 16.41 | 16.48 | 16.42 | 16.42 | 0.04 |
8×105 | 19.61 | 19.65 | 19.67 | 19.62 | 19.64 | 0.03 | |
8×104 | 23.11 | 23.05 | 23.02 | 22.94 | 23.03 | 0.07 | |
8×103 | 26.36 | 26.46 | 26.52 | 26.43 | 26.44 | 0.07 | |
8×102 | 29.59 | 29.57 | 29.52 | 29.60 | 29.57 | 0.04 | |
A5547 | 8×106 | 16.44 | 16.49 | 16.38 | 16.35 | 16.42 | 0.06 |
8×105 | 19.88 | 19.77 | 19.79 | 19.78 | 19.81 | 0.05 | |
8×104 | 23.23 | 23.28 | 23.19 | 23.12 | 23.21 | 0.07 | |
8×103 | 26.45 | 26.54 | 26.48 | 26.42 | 26.47 | 0.05 | |
8×102 | 29.57 | 29.74 | 29.52 | 29.72 | 29.64 | 0.11 | |
DAS68416 | 8×106 | 16.50 | 16.44 | 16.39 | 16.33 | 16.42 | 0.07 |
8×105 | 19.84 | 19.82 | 19.87 | 19.81 | 19.84 | 0.03 | |
8×104 | 23.42 | 23.24 | 23.07 | 23.01 | 23.19 | 0.18 | |
8×103 | 26.49 | 26.54 | 26.45 | 26.48 | 26.49 | 0.04 | |
8×102 | 29.55 | 29.42 | 29.57 | 29.68 | 29.56 | 0.11 |
图5 以pUC57-SOY为标准样品制作的内源基因lectin和外源基因CV127转化体标准曲线 A:扩增图;B:标准曲线图;1:内源基因lectin;2:外源基因CV127
Fig. 5 Standard curve of endogenous gene lectin and foreign gene CV127 convertor prepared with pUC57-SOY as the standard sample A: Amplified map. B: Standard curve. 1: Endogenous gene lectin. 2: Foreign gene CV127
图6 以pUC57-SOY为标准样品制作的CV127转化体定值标准曲线图 A:扩增图;B:标准曲线图;1-3:3次重复;蓝色:外源基因;绿色:内源基因
Fig. 6 Standard curve diagram of CV127 reformer value prepared with pUC57-SOY as the standard sample A: Amplified map. B: Standard curve. 1-3: Three repetitions respectively. Blue: Foreign gene. Green: Endogenous gene
转化体理论含量 Theoretical content of transformant/% | 目标序列 Target sequence | 目标序列测量拷贝数 Target sequence measurement copy number /(Copies·reaction-1) | 拷贝数平均值 Copy number mean/(Copies·reaction-1) | 转化体测量含量 Measures content of transformant/% | RSD/% | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
重复1 Repeat 1 | 重复2 Repeat2 | 重复3 Repeat 3 | |||||||||||||
平行1 Parallel 1 | 平行2 Parallel 2 | 平行3 Parallel 3 | 平行1 Parallel 1 | 平行2 Parallel 2 | 平行3 Parallel3 | 平行1 Parallel 1 | 平行2 Parallel 2 | 平行3 Parallel 3 | |||||||
3 | CV127 | 710.3 | 731.3 | 684.3 | 706.5 | 726.3 | 814.6 | 651.6 | 673.7 | 673.3 | 708 | 2.98 | 10.82 | ||
lectin | 22 450 | 22 790 | 26 230 | 19 580 | 27 860 | 29 570 | 21 140 | 22 600 | 21 390 | 23 734 | |||||
1 | CV127 | 176.46 | 256.71 | 331.98 | 204.25 | 432.72 | 364.6 | 213.36 | 202.36 | 216.98 | 266.58 | 0.99 | 11.61 | ||
lectin | 20 760 | 2 8210 | 30 180 | 21 500 | 36 060 | 36 460 | 21 750 | 23 260 | 24 940 | 27 940 | |||||
0.5 | CV127 | 98.85 | 98.88 | 119.8 | 105.94 | 95.94 | 92.21 | 98.53 | 103.03 | 88.37 | 100 | 0.5 | 5.32 | ||
lectin | 19 010 | 20 180 | 23 490 | 22 070 | 18 450 | 19 620 | 18 590 | 19 440 | 19 210 | 20 006 |
表4 质粒DNA标准分子pUC57-SOY靶标的定值结果
Table 4 Setting results of pUC57-SOY target of plasmid DNA standard molecule
转化体理论含量 Theoretical content of transformant/% | 目标序列 Target sequence | 目标序列测量拷贝数 Target sequence measurement copy number /(Copies·reaction-1) | 拷贝数平均值 Copy number mean/(Copies·reaction-1) | 转化体测量含量 Measures content of transformant/% | RSD/% | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
重复1 Repeat 1 | 重复2 Repeat2 | 重复3 Repeat 3 | |||||||||||||
平行1 Parallel 1 | 平行2 Parallel 2 | 平行3 Parallel 3 | 平行1 Parallel 1 | 平行2 Parallel 2 | 平行3 Parallel3 | 平行1 Parallel 1 | 平行2 Parallel 2 | 平行3 Parallel 3 | |||||||
3 | CV127 | 710.3 | 731.3 | 684.3 | 706.5 | 726.3 | 814.6 | 651.6 | 673.7 | 673.3 | 708 | 2.98 | 10.82 | ||
lectin | 22 450 | 22 790 | 26 230 | 19 580 | 27 860 | 29 570 | 21 140 | 22 600 | 21 390 | 23 734 | |||||
1 | CV127 | 176.46 | 256.71 | 331.98 | 204.25 | 432.72 | 364.6 | 213.36 | 202.36 | 216.98 | 266.58 | 0.99 | 11.61 | ||
lectin | 20 760 | 2 8210 | 30 180 | 21 500 | 36 060 | 36 460 | 21 750 | 23 260 | 24 940 | 27 940 | |||||
0.5 | CV127 | 98.85 | 98.88 | 119.8 | 105.94 | 95.94 | 92.21 | 98.53 | 103.03 | 88.37 | 100 | 0.5 | 5.32 | ||
lectin | 19 010 | 20 180 | 23 490 | 22 070 | 18 450 | 19 620 | 18 590 | 19 440 | 19 210 | 20 006 |
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