棉花YABBY基因家族的全基因组分析

doi:10.13560/j.cnki.biotech.bull.1985.2015.11.019

生物技术通报 ›› 2015, Vol. 31 ›› Issue (11): 146-152.doi: 10.13560/j.cnki.biotech.bull.1985.2015.11.019

棉花YABBY基因家族的全基因组分析

徐珍珍, 倪万潮, 张香桂, 郭琪, 徐鹏, 沈新莲

江苏省农业科学院经济作物研究所农业部长江下游棉花和油菜重点实验室，南京 210014

收稿日期:2015-10-13 出版日期:2015-11-26 发布日期:2015-11-26
作者简介:徐珍珍，女，助理研究员，研究方向: 棉花遗传育种；E-mail: lele20032@163.com
基金资助:
江苏省农业科技自主创新基金[CX(14)5008]，江苏省协同创新中心，江苏省科技项目(BK20150540)，国家自然科学基金(31471545)

Genome-wide Analysis of the YABBY Gene Family in Cotton

Xu Zhenzhen, Ni Wanchao, Zhang Xianggui, Guo Qi, Xu Peng, Shen Xinlian

Institute of Industrial Crops，Jiangsu Academy of Agricultural Sciences / Key Laboratory of Cotton and Rapeseed，Ministry of Agriculture，Nanjing 210014

Received:2015-10-13 Published:2015-11-26 Online:2015-11-26

摘要/Abstract

摘要： YABBY基因家族属于锌指蛋白超家族(Zinc finger super-family)的亚家族，在调控植物叶和花器官发育过程中起着重要的作用。从陆地棉标准系TM-1(Gossypium hirsutum L. acc. TM-1)基因组中鉴定到23个YABBY基因家族成员，具有不同的亚细胞定位；这些基因分布在16条染色体和1条Scaffold上，且有9对共线性基因；棉花的YABBY基因家族分为4个亚组，每个亚组都有与拟南芥同源的基因，且每个亚组成员间具有相似的基序类型和排列顺序；组织表达分析表明，TM-1全基因组中的23个YABBY基因家族成员具有较为广泛的组织表达类型。所有YABBY基因家族成员在花、蕾和茎端分生组织中表达。

关键词: YABBY基因家族, 陆地棉, 基因组

Abstract: The YABBY gene family, as a subfamily of zinc finger super-family, plays a vital role in regulating the development of plant leaf and floral organs. 23 YABBY genes with different subcellular localizations were identified from the genome of upland cotton(Gossypium hirsutum L. acc. TM-1). These 23 YABBY genes distributed on 16 chromosomes and 1 Scaffold, and 9 pairs of them were syntenic genes. The cotton YABBY gene family could be divided into four subfamily groups, and there were homologous genes of Arabidopsis thaliana L. in each group. Furthermore, there were similar motif type and arrangement in each group. The tissue expression analysis showed that the expression pattern of the 23 YABBY genes from TM-1 genome varied among different tissues, and all the YABBY gene family members were expressed in the flower, bud and shoot apical meristem.

Key words: YABBY gene family, upland cotton, genome

徐珍珍, 倪万潮, 张香桂, 郭琪, 徐鹏, 沈新莲. 棉花YABBY基因家族的全基因组分析[J]. 生物技术通报, 2015, 31(11): 146-152.

Xu Zhenzhen, Ni Wanchao, Zhang Xianggui, Guo Qi, Xu Peng, Shen Xinlian. Genome-wide Analysis of the YABBY Gene Family in Cotton[J]. Biotechnology Bulletin, 2015, 31(11): 146-152.

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棉花YABBY基因家族的全基因组分析

Genome-wide Analysis of the YABBY Gene Family in Cotton

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