非生物胁迫下植物组蛋白修饰参与基因表达调控的研究进展

doi:10.13560/j.cnki.biotech.bull.1985.2019-0880

摘要/Abstract

摘要： 植物生长过程中不可避免的要面对不利的环境因素,它们已经进化出了灵活的基因表达重编程机制应对干旱、高盐、冷、热或洪涝等非生物环境胁迫。近年来,随着表观遗传学研究的不断深入,发现组蛋白翻译后修饰特性会受环境胁迫的影响而改变,启动相关胁迫应答基因表达,或者充当胁迫应答转录因子的下游参与调控转录活动,组蛋白修饰已经被证实在植物逆境的响应过程中起着至关重要的作用。主要综述了非生物胁迫下植物组蛋白修饰参与基因转录应答的最新进展,以期为植物非生物胁迫耐受性的相关研究提供参考。

关键词: 组蛋白修饰, 非生物胁迫, 胁迫应答, 基因表达调控

Abstract: It is unavoidable to suffer from adverse environment in the process of plant growth. Hence they have evolved a flexible mechanism for reprogramming gene expression to cope with abiotic stresses such as drought,high salinity,cold,heat or submergence. Recently,along with the intensive studies of epigenetics,histone modification has demonstrated to play a crucial role under abiotic stress in plant. The properties of histone modification after translation can be altered by environmental stress,which initiates the expressions of abiotic stress-responsive genes,or act as a downstream factor to participant in the transcriptional regulation. In this review,we summarize the existing information about histone modification involved in the transcriptional regulation of abiotic stress-responsive genes,which is expected to provide a reference for the research on abiotic stress tolerance of plants.

Key words: histone modification, abiotic stress, stress response, transcriptional regulation of genes

赵琳, 王璞, 吴琦, 宋瑞瑞, 兰韬, 云振宇. 非生物胁迫下植物组蛋白修饰参与基因表达调控的研究进展[J]. 生物技术通报, 2020, 36(7): 182-189.

ZHAO Lin, WANG Pu, WU Qi, SONG Rui-rui, LAN Tao, YUN Zhen-yu. Research Progress in Histone Modification of Plant Involved in the Regulation of Gene Expression Response to Abiotic Stress[J]. Biotechnology Bulletin, 2020, 36(7): 182-189.

参考文献

[1] Cutler SR, Rodriguez PL, Finkelstein RR, et al.Abscisic acid:emergence of a core signaling network[J]. Annual Review of Plant Biology, 2010(61):651-679.
[2] Amtmann A, Armengaud P.Effects of N, P, K and S on metabolism:new knowledge gained from multi-level analysis[J]. Current Opinion in Plant Biology, 2009, 12(3):275-283.
[3] Wang LC, Wu JR, Chang WL, et al.Arabidopsis HIT4 encodes a novel chromocentre-localized protein involved in the heat reactivation of transcriptionally silent loci and is essential for heat tolerance in plants[J]. Journal of Experimental Botany, 2013, 64(6):1689-1701.
[4] Miura K, Furumoto T.Cold signaling and cold response in plants[J]. International Journal of Molecular Sciences, 2013, 14(3):5312-5337.
[5] Saidi Y, Finka A, Goloubinoff P.Heat perception and signalling in plants:a tortuous path to thermotolerance[J]. New Phytologist, 2011, 190(3):556-565.
[6] Singh D, Laxmi A.Transcriptional regulation of drought response:a tortuous network of transcriptional factors[J]. Frontiers in Plant Science, 2015(6):895.
[7] Tang XL, Mu XM, Shao HB, et al.Global plant-responding mechanisms to salt stress:physiological and molecular levels and implications in biotechnology[J]. Critical Reviews in Biotechnology, 2015, 35(4):425-437.
[8] Sauter M.Root responses to flooding[J]. Current Opinion in Plant Biology, 2013, 16(3):282-286.
[9] Geng Y, Wu R, Wee CW, et al.A spatio-temporal understanding of growth regulation during the salt stress response in Arabidopsis[J]. The Plant Cell, 2013, 25(6):2132-2154.
[10] Wang H, Wang H, Shao H, et al.Recent advances in utilizing transcription factors to improve plant abiotic stress tolerance by transgenic technology[J]. Frontiers in Plant Science, 2016(7):67.
[11] Roudier F, Ahmed I, Berard C, et al.Integrative epigenomic mapping defines four main chromatin states in Arabidopsis[J]. The EMBO Journal, 2011, 30(10):1928-1938.
[12] Zhang XY, Bernatavichute YV, Cokus S, et al.Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana[J]. Genome Biology, 2009, 10(6):R62.
[13] Zhang X, Clarenz O, Cokus S, et al.Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis[J]. PLoS Biology, 2007, 5(5):e129.
[14] Bernatavichute YV, Zhang XY, Cokus S, et al.Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana[J]. PLoS One, 2008, 3(9):e3156.
[15] Zong W, Zhong X, You J, et al.Genome-wide profiling of histone H3K4-tri-methylation and gene expression in rice under drought stress[J]. Plant Molecular Biology, 2013, 81(1/2):175-88.
[16] Singh P, Yekondi S, Chen PW, et al.Environmental history modulates Arabidopsis pattern-triggered immunity in a HISTONE ACETYLTRANSFERASE1- dependent manner[J]. The Plant Cell, 2014, 26(6):2676-2688.
[17] Ding Y, Avramova Z, Fromm M.The Arabidopsis trithorax-like factor ATX1 functions in dehydration stress responses via ABA-dependent and ABA-independent pathways[J]. The Plant Journal, 2011, 66(5):735-744.
[18] Huang S, Zhang A, Jin JB, et al.Arabidopsis histone H3K4 demethylase JMJ17 functions in dehydration stress response[J]. New Phytologist, 2019, 223(3):1372-1387.
[19] Kim JM, To TK, Ishida J, et al.Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana[J]. Plant and Cell Physiology, 2008, 49(10):1580-1588.
[20] Nguyen HN, Cheong JJ.The AtMYB44 promoter is accessible to signals that induce different chromatin modifications for gene transcription[J]. Plant Physiol Biochem, 2018, 130:14-19.
[21] Nguyen NH, Jung C, Cheong JJ.Chromatin remodeling for the transcription of type 2C protein phosphatase genes in response to salt stress[J]. Plant Physiol Biochem, 2019, 141:325-331.
[22] Tsuji H, Saika H, Tsutsumi N, et al.Dynamic and reversible changes in histone H3-Lys4 methylation and H3 acetylation occurring at submergence-inducible genes in rice[J]. Plant and Cell Physiology, 2006, 47(7):995-1003.
[23] Chen LT, Luo M, Wang YY, et al.Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response[J]. Journal of Experimental Botany, 2010, 61(12):3345-3353.
[24] Folsom JJ, Begcy K, Hao X, et al.Rice fertilization-independent endosperm1 regulates seed size under heat stress by controlling early endosperm development[J]. Plant Physiology, 2014, 165(1):238-248.
[25] González RM, Ricardi MM, Iusem ND.Epigenetic marks in an adaptive water stress-responsive gene in tomato roots under normal and drought conditions[J]. Epigenetics, 2013, 8(8):864-872.
[26] Kwon CS, Lee D, Choi G, et al.Histone occupancy-dependent and -independent removal of H3K27 trimethylation at cold-responsive genes in Arabidopsis[J]. Plant J, 2009, 60(1):112-121.
[27] Zong W, Yang J, Fu J, et al.Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice[J]. Journal of Integrative Plant Biology, 2019, doi:10. 1111/jipb. 12850.
[28] Zhu N, Cheng S, Liu X, et al.The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice[J]. Plant Science, 2015, 236:146-156.
[29] González RM, Ricardi MM, Iusem ND.Atypical epigenetic mark in an atypical location:cytosine methylation at asymmetric(CNN)sites within the body of a non-repetitive tomato gene[J]. BMC Plant Biology, 2011, 11(1):94.
[30] Sani E, Herzyk P, Perrella G, et al.Hyperosmotic priming of Arabidopsis seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome[J]. Genome Biology, 2013, 14(6):R59.
[31] Ding Y, Fromm M, Avramova Z.Multiple exposures to drought ‘train’ transcriptional responses in Arabidopsis[J]. Nature Communications, 2012, 13(3):740.
[32] Liu HC, Lämke J, Lin SY, et al.Distinct heat shock factors and chromatin modifications mediate the organ-autonomous transcriptional memory of heat stress[J]. The Plant Journal, 2018, 95(3):401-413.
[33] Kuo MH, Brownell JE, Sobel RE, et al.Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines[J]. Nature, 1996, 383(6597):269-272.
[34] Shahbazian MD, Grunstein M.Functions of site-specific histone acetylation and deacetylation[J]. Annual Review of Biochemistry, 2007(76):75-100.
[35] Wang Z, Zang C, Cui K, et al.Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes[J]. Cell, 2009, 138(5):1019-1031.
[36] Chinnusamy V, Zhu J, Zhu JK.Cold stress regulation of gene expression in plants[J]. Trends Plant Sci, 2007, 10:444-451.
[37] Matsui A, Ishida J, Morosawa T, et al.Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array[J]. Plant and Cell Physiology, 2008, 49(8):1135-1149.
[38] Kim JM, To TK, Ishida J, et al.Transition of chromatin status during the process of recovery from drought stress in Arabidopsis thaliana[J]. Plant Cell Physiol, 2012, 53(5):847-856.
[39] Zheng M, Liu X, Lin J, et al.Histone acetyltransferase GCN5 contributes to cell wall integrity and salt stress tolerance by altering the expression of cellulose synthesis genes[J]. The Plant Journal, 2019, 97(3):587-602.
[40] Hu Z, Song N, Zheng M, et al.Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis[J]. The Plant Journal, 2015, 84(6):1178-1791.
[41] Weng M, Yang Y, Feng H, et al.Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress in Arabidopsis thaliana[J]. Plant Cell and Environment, 2014, 37(9):2128-2138.
[42] Li H, Yan S, Zhao L, et al.Histone acetylation associated up-regulation of the cell wall related genes is involved in salt stress induced maize root swelling[J]. BMC Plant Biology, 2014, 14:105.
[43] Zhao L, Wang P, Yan S, et al.Promoter-associated histone acetylation is involved in the osmotic stress-induced transcriptional regulation of the maize ZmDREB2A gene[J]. Physiologia Plantarum, 2014, 151(4):459-467.
[44] Yolcu S, Ozdemir F, Güler A, et al.Histone acetylation influences the transcriptional activation of POX in Beta vulgaris L. and Beta maritima L. under salt stress[J]. Plant Physiology and Biochemistry, 2016, 100:37-46.
[45] To TK, Nakaminami K, Kim JM, et al.Arabidopsis HDA6 is required for freezing tolerance[J]. Biochemical and Biophysical Research Communications, 2011, 406(3):414-419.
[46] Hu Y, Zhang L, Zhao L, et al.Trichostatin A selectively suppresses the cold-induced transcription of the ZmDREB1 gene in maize[J]. PLoS One, 2011, 6(7):e22132.
[47] Hu Y, Zhang L, He S, et al.Cold stress selectively unsilences tandem repeats in heterochromatin associated with accumulation of H3K9ac[J]. Plant Cell Environ, 2012, 35(12):2130-2142.
[48] Hou H, Zhao L, Zheng X, et al.Dynamic changes in histone modification are associated with upregulation of Hsf and rRNA genes during heat stress in maize seedlings[J]. Protoplasma, 2019, 256(5):1245-1256.
[49] Zhang H, Yue M, Zheng X, et al.The role of promoter-associated histone acetylation of Haem Oxygenase-1(HO-1)and Giberellic Acid-Stimulated Like-1(GSL-1)genes in heat-induced lateral root primordium inhibition in maize[J]. Frontiers in Plant Science, 2018, 9:1520.
[50] Zhao L, Wang P, Hou H, et al.Transcriptional regulation of cell cycle genes in response to abiotic stresses correlates with dynamic changes in histone modifications in maize[J]. PLoS One, 2014, 9(8):e106070.
[51] Roy D, Paul A, Roy A, et al.Differential acetylation of histone H3 at the regulatory region of OsDREB1b promoter facilitates chromatin remodelling and transcription activation during cold stress[J]. PLoS One, 2014, 9(6):e100343.
[52] Zhang Z, Zhang S, Zhang Y, et al.Arabidopsis floral initiator SKB1 confers high salt tolerance by regulating transcription and Pre-mRNA splicing through altering histone H4R3 and small nuclear ribonucleoprotein LSM4 methylation[J]. The Plant Cell, 2011, 23(1):396-411.
[53] Wang Z, Casas-Mollano JA, Xu J, et al.Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana[J]. Proceedings of the National Academy of Sciences, 2015, 112(27):8487-8492.
[54] Ma S, Tang N, Li X, et al.Reversible histone H2B monoubiquitination fine-tunes abscisic acid signaling and drought response in rice[J]. Molecular Plant, 2019, 12(2):263-277.
[55] Zhou S, Chen Q, Sun Y, et al.Histone H2B monoubiquitination regulates salt stress-induced microtubule depolymerization in Arabidopsis[J]. Plant Cell and Environment, 2017, 40(8):1512-1530.