生物技术通报 ›› 2023, Vol. 39 ›› Issue (6): 217-232.doi: 10.13560/j.cnki.biotech.bull.1985.2022-1111

• 研究报告 • 上一篇    下一篇

菊芋NAC转录因子家族基因的鉴定及分析

郭怡婷1,2(), 赵文菊1,2, 任延靖1,2,3, 赵孟良1,2,3()   

  1. 1.青海大学,西宁 810016
    2.青海省农林科学院 青海省蔬菜遗传与生理重点实验室,西宁 810016
    3.青海大学三江源生态和高原农牧业国家重点实验室,西宁 810016
  • 收稿日期:2022-09-09 出版日期:2023-06-26 发布日期:2023-07-07
  • 通讯作者: 赵孟良,男,博士,副研究员,研究方向:蔬菜遗传育种与分子生物学;E-mail: 8304269@163.com
  • 作者简介:郭怡婷,女,硕士研究生,研究方向:蔬菜遗传育种与分子生物学;E-mail: yiting0201@163.com
  • 基金资助:
    青海省科技厅应用基础研究项目(2022-ZJ-736);青海大学青年科研基金项目(2021-QNY-2)

Identification and Analysis of NAC Transcription Factor Family Genes in Helianthus tuberosus L.

GUO Yi-ting1,2(), ZHAO Wen-ju1,2, REN Yan-jing1,2,3, ZHAO Meng-liang1,2,3()   

  1. 1. Qinghai University, Xining 810016
    2. Academy of Agriculture and Forest Science, Qinghai Key Laboratory of Vegetable Genetics and Physiology, Qinghai Province, Xining 810016
    3. State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining 810016
  • Received:2022-09-09 Published:2023-06-26 Online:2023-07-07

摘要:

通过转录组学的方法,筛选与菊芋叶片响应干旱胁迫密切相关的NAC转录因子,为今后菊芋NAC基因的克隆及功能验证奠定理论基础。以抗旱青芋2号菊芋品种为实验材料,采取25% PEG6000渗透模拟干旱胁迫的方法,分别在处理0、18、24和36 h后取菊芋叶片,通过转录组测序的方法,筛选干旱胁迫下菊芋叶片中差异表达的NAC转录因子,并对其进行分析。在菊芋叶片中共鉴定出了70个NAC基因,序列长度在408-1 869 bp之间,检测到的motif基序的长度在21-50个碱基不等,系统进化树分析显示,大部分的HtNAC基因能够与其他的NAC基因聚为一类;通过与已报道的抗旱相关的其他作物中的NAC基因进行聚类发现,HtNAC90-3AtNAC72聚为一类,HtNAC67-3AtNAC055聚为一类,HtNAC2-1AtNAC019聚为一类,HtNAC36SINAC6聚为一类,HtNAC83-1AtNAC96聚为一类;组织特异性表达分析结果显示,HtNACs基因在种子和花瓣中的表达量相对较高,干旱诱导表达分析显示,分别有38个和11个HtNACs基因在菊芋叶片和根中呈现出诱导后上升表达的趋势。本研究发现HtNACs在种子和花瓣中表达量较高,尤其以花瓣中的表达量最高,后续可从菊芋的花瓣中克隆获得菊芋HtNACs并进行相关功能验证等工作。

关键词: 菊芋, NAC, 转录因子

Abstract:

The NAC transcription factors closely related to drought stress responses of Jerusalem artichoke(JA)(Helianthus tuberosus L.)leaves were screened by transcriptome method, which may lay a theoretical foundation for the cloning and functional verification of JA NAC gene in the future. In this study, the drought-resistant Qingyu No. 2 JA was used as experimental material. The leaves of JA were collected after treatment for 0, 18, 24 and 36 h, respectively, and the differentially expressed NAC transcription factors were screened and analyzed by transcriptomic sequencing. Referenced as RNA-Sequencing data, 70 NAC genes were identified in JA leaves with sequence length between 408-1 869 bp. The lengths of the detected motif ranged from 21 to 50 bases. Phylogenetic tree analysis showed that most HtNACs genes were clustered with other NAC genes. It was found that HtNAC90-3 was clustered with AtNAC72, HtNAC67-3 was clustered with AtNAC055, HtNAC2-1 was clustered with AtNAC019, HtNAC36 was clustered with SINAC6 through the clustering of NAC genes in other crops related to reported drought resistance. HtNAC83-1 was clustered with AtNAC96. Tissue-specific expression analysis showed relatively high HtNAC expression in seeds and petals. Drought-induced expression analysis showed that 38 and 11 HtNAC genes revealed the increasing expression trend after drought induction in JA leaves and roots, respectively. In this study, it was found that the expressions of HtNACs in seeds and petals was high, especially in petals. Subsequently, HtNACs of JA can be cloned from petals of JA and related functions can be verified.

Key words: Helianthus tuberosus L., NAC, transcription factor