生物技术通报 ›› 2025, Vol. 41 ›› Issue (8): 197-210.doi: 10.13560/j.cnki.biotech.bull.1985.2025-0094
• 研究报告 • 上一篇
曾丹1,2(
), 黄园1,2(
), 王健1,2, 张艳1,2, 刘庆霞1,2, 谷荣辉3, 孙庆文1,2, 陈宏宇1,2
收稿日期:2025-01-21
出版日期:2025-08-26
发布日期:2025-08-14
通讯作者:
黄园,女,博士,讲师,研究方向 :中药资源与开发;E-mail: huangyuanhy2014@163.com作者简介:曾丹,女,研究方向 :中药资源与开发;E-mail: 2146488718@qq.com
基金资助:
ZENG Dan1,2(
), HUANG Yuan1,2(
), WANG Jian1,2, ZHANG Yan1,2, LIU Qing-xia1,2, GU Rong-hui3, SUN Qing-wen1,2, CHEN Hong-yu1,2
Received:2025-01-21
Published:2025-08-26
Online:2025-08-14
摘要:
目的 鉴定铁皮石斛(Dendrobium officinale)bZIP基因家族,通过生物信息学和基因表达分析,阐明DobZIP转录因子的生物学功能,为后续深入探究DobZIP转录因子的分子机制提供理论指导。 方法 基于IMP数据库中的铁皮石斛基因组数据鉴定出铁皮石斛bZIP基因家族成员,对该家族成员进行多项生物信息学分析,同时利用转录组数据和实时荧光定量PCR技术对DobZIP转录因子进行组织表达模式及非生物胁迫表达分析。 结果 共鉴定出54个DobZIP基因,DobZIP蛋白均无信号肽,仅有DobZIP54有跨膜结构域,亚细胞定位主要在细胞核中。DobZIP家族成员划分在10个亚家族,且同一亚家族成员含有相似的结构和基序;DobZIP不均匀地分布在18条染色体上,有两对基因间存在串联关系,种间存在多条共线性关系,与水稻的bZIP家族同源性较高。顺势作用元件分析表明,DobZIP家族成员均含有多个参与生长发育和响应逆境胁迫的顺式作用元件。基因表达模式分析显示,DobZIP家族成员存在组织表达特异性,且DobZIP4、DobZIP10、DobZIP28、DobZIP32、DobZIP37在不同程度上受低温、干旱和氯化钠胁迫的诱导。除DobZIP32和DobZIP37外,DobZIP4、DobZIP10、DobZIP28还受高温胁迫的诱导。 结论 铁皮石斛基因组中共鉴定出54个DobZIP基因,DobZIP具有组织表达特异性,且DobZIP4、DobZIP10、DobZIP28、DobZIP32、DobZIP37在低温、干旱和氯化钠胁迫下均受到不同程度的诱导。
曾丹, 黄园, 王健, 张艳, 刘庆霞, 谷荣辉, 孙庆文, 陈宏宇. 铁皮石斛bZIP转录因子家族全基因组鉴定及表达分析[J]. 生物技术通报, 2025, 41(8): 197-210.
ZENG Dan, HUANG Yuan, WANG Jian, ZHANG Yan, LIU Qing-xia, GU Rong-hui, SUN Qing-wen, CHEN Hong-yu. Genome-wide Identification and Expression Analysis of bZIP Transcription Factor Family in Dendrobium officinale[J]. Biotechnology Bulletin, 2025, 41(8): 197-210.
| 引物名称 Primer name | 引物序列Primer sequence(5'-3') |
|---|---|
| DobZIP4-F | GAATCCGTCGTCTGAGTC |
| DobZIP4-R | TGTCGCTGGTATGGTTATC |
| DobZIP10-F | AGAGGATAGCGATGAGGAT |
| DobZIP10-R | TGTGGCTGTGGATTCAAG |
| DobZIP28-F | GGTCTGTAAGTGATTCTCTGA |
| DobZIP28-R | CGCCTTCTTGATGTTCTCT |
| DobZIP32-F | TCTCAAGGTATGGAAGCATT |
| DobZIP32-R | AGATTGTCGTGTCGTTAGTA |
| DobZIP37-F | ACCAGAAGAAGAGGAAGAGA |
| DobZIP37-R | GGATTGATGAGGAGGAGTTC |
| DoActin-F | TCCCAAGGCAAACAGAGAAA |
| DoActin-R | GGCCACTAGCATATAGGGAAAG |
表1 定量PCR引物序列
Table 1 Primer sequences for quantitative PCR
| 引物名称 Primer name | 引物序列Primer sequence(5'-3') |
|---|---|
| DobZIP4-F | GAATCCGTCGTCTGAGTC |
| DobZIP4-R | TGTCGCTGGTATGGTTATC |
| DobZIP10-F | AGAGGATAGCGATGAGGAT |
| DobZIP10-R | TGTGGCTGTGGATTCAAG |
| DobZIP28-F | GGTCTGTAAGTGATTCTCTGA |
| DobZIP28-R | CGCCTTCTTGATGTTCTCT |
| DobZIP32-F | TCTCAAGGTATGGAAGCATT |
| DobZIP32-R | AGATTGTCGTGTCGTTAGTA |
| DobZIP37-F | ACCAGAAGAAGAGGAAGAGA |
| DobZIP37-R | GGATTGATGAGGAGGAGTTC |
| DoActin-F | TCCCAAGGCAAACAGAGAAA |
| DoActin-R | GGCCACTAGCATATAGGGAAAG |
图2 铁皮石斛bZIP家族蛋白序列多重比对红色框内代表铁皮石斛bZIP家族蛋白保守结构域
Fig. 2 Multiple alignment of D. officinale bZIP family protein sequencesThe red box indicates the conserved domain of the bZIP family protein of D. officinale
图11 胁迫处理下铁皮石斛5个bZIP转录因子相对表达规律分析*P<0.05,**P<0.01
Fig. 11 Relative expression analysis of five bZIP transcription factors under stress treatment in D.officinale
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