Biotechnology Bulletin ›› 2026, Vol. 42 ›› Issue (5): 89-100.doi: 10.13560/j.cnki.biotech.bull.1985.2025-1426
YANG Tao1,2(
), ZENG Fan-cheng1,2, ZENG Yu-xiao2, TAO Rui-yan2, XUE Zhi-hong1,2, TAO Qian2, ZHONG Yang2, JIANG Fan2, XIONG Xing-yao1,2(
), CHENG Xu1,2(
)
Received:2025-12-26
Online:2026-05-26
Published:2026-06-10
Contact:
XIONG Xing-yao, CHENG Xu
E-mail:youngtao1015@163.com;xiongxingyao@caas.cn;chengxu@caas.cn
YANG Tao, ZENG Fan-cheng, ZENG Yu-xiao, TAO Rui-yan, XUE Zhi-hong, TAO Qian, ZHONG Yang, JIANG Fan, XIONG Xing-yao, CHENG Xu. Construction of Efficient Microbial Consortia and Their Effects on Potato Growth[J]. Biotechnology Bulletin, 2026, 42(5): 89-100.
菌群编号 Consortium ID | 核心菌株 Core strains | 其他功能菌株 Additional functional strains | 菌株总数 Total number of strains |
|---|---|---|---|
| B1 | Rp.CX15 | Ps.sp.CX02 | 2 |
| B3 | Rp.CX15 | Pc.P1E11 | 2 |
| B5 | Rp.CX15 | Ps.sp.P3A2 | 2 |
| C1 | Rp.CX15 | Ps.sp.CX02 + Pc.P1E11 | 3 |
| C3 | Rp.CX15 | Ps.sp.CX02 + Ps.sp.P3A2 | 3 |
| C5 | Rp.CX15 | Pc.P1E11 + Ps.sp.P3A2 | 3 |
| D1 | Rp.CX15 | Ps.sp.CX02 + Pc.P1E11 + Ps.sp.P3A2 | 4 |
| B2 | Rp.CX18 | Ps.sp.CX02 | 2 |
| B4 | Rp.CX18 | Pc.P1E11 | 2 |
| B6 | Rp.CX18 | Ps.sp.P3A2 | 2 |
| C2 | Rp.CX18 | Ps.sp.CX02 + Pc.P1E11 | 3 |
| C4 | Rp.CX18 | Ps.sp.CX02 + Ps.sp.P3A2 | 3 |
| C6 | Rp.CX18 | Pc.P1E11 + Ps.sp.P3A2 | 3 |
| D2 | Rp.CX18 | Ps.sp.CX02 + Pc.P1E11 + Ps.sp.P3A2 | 4 |
Table 1 Composition information of microbial consortia
菌群编号 Consortium ID | 核心菌株 Core strains | 其他功能菌株 Additional functional strains | 菌株总数 Total number of strains |
|---|---|---|---|
| B1 | Rp.CX15 | Ps.sp.CX02 | 2 |
| B3 | Rp.CX15 | Pc.P1E11 | 2 |
| B5 | Rp.CX15 | Ps.sp.P3A2 | 2 |
| C1 | Rp.CX15 | Ps.sp.CX02 + Pc.P1E11 | 3 |
| C3 | Rp.CX15 | Ps.sp.CX02 + Ps.sp.P3A2 | 3 |
| C5 | Rp.CX15 | Pc.P1E11 + Ps.sp.P3A2 | 3 |
| D1 | Rp.CX15 | Ps.sp.CX02 + Pc.P1E11 + Ps.sp.P3A2 | 4 |
| B2 | Rp.CX18 | Ps.sp.CX02 | 2 |
| B4 | Rp.CX18 | Pc.P1E11 | 2 |
| B6 | Rp.CX18 | Ps.sp.P3A2 | 2 |
| C2 | Rp.CX18 | Ps.sp.CX02 + Pc.P1E11 | 3 |
| C4 | Rp.CX18 | Ps.sp.CX02 + Ps.sp.P3A2 | 3 |
| C6 | Rp.CX18 | Pc.P1E11 + Ps.sp.P3A2 | 3 |
| D2 | Rp.CX18 | Ps.sp.CX02 + Pc.P1E11 + Ps.sp.P3A2 | 4 |
Fig. 1 Colony morphology, growth-promoting effects, and validation of the disease-suppressive and salt-tolerant potential of the tested strainsA: Colony morphologies of individual strains on 1/2 TSA medium and phenotypes of potato seedlings at three weeks post-inoculation. B: Results of the dual-culture assay between strain Pc.P1E11 and the pathogen (AP; PC48). C: Phenotypic validation of the effect of strain Ps.sp.P3A2 on potato seedling growth under 200 mmol/L NaCl stress
Fig. 2 Evaluation of interactions among different strains and verification of the growth-promoting effects of strain combinations on diploid potatoA: Results of pairwise confrontation assays of strains on 1/2 TSA medium. B: Growth performance of each strain under supernatant treatment, where circles indicate the ratio (OD₆₀₀_strain + supernatant/OD₆₀₀_strain). C-F: Effects of different treatments on the aboveground fresh weight, underground fresh weight, total root length, and total root area of potato seedlings (n=6). Error bars in box plots indicate standard deviation. ns denotes no significant difference (independent-sample t-test, *P<0.05, **P<0.01, ***P<0.001), the same below
Fig. 3 Effects of different strain combinations on growth indicators of potato seedlingsA-D: Aboveground dry weight, underground dry weight, stem diameter, and total plant dry weight, respectively. Error bars in the bar charts indicate the standard deviation (n=4). The legend indicates the presence of strains in each combination (solid dots indicate presence)
Fig. 4 Evaluation of growth-promoting effects of microbial consortia under natural soil conditionsA: Plant growth phenotypes. B-G: Relative chlorophyll content, stem diameter, plant height, aboveground dry weight, underground dry weight, and total plant dry weight (n=4). Differences among different treatment groups were tested using one-way analysis of variance. Different lowercase letters indicate significant differences (P<0.05)
Fig. 5 Effects of different inoculation methods on the growth-promoting efficacy of microbial consortia on potato seedlingsA: Relative chlorophyll content. B: Plant height. C: Aboveground fresh weight. D: Underground fresh weight. E: Aboveground dry weight. F: Underground dry weight. G: Total biomass. H: Phenotypic performance of seedlings under different treatments. SI: Substrate inoculation treatment. SSI: Substrate inoculation combined with seedling inoculation treatment. Different colors in the figure are used to distinguish the four microbial consortia treatment groups (B2, B4, B6, and C4) (n=8)
Fig. 6 Effect of microbial consortia on tuber weight per plant of potato under field conditionsA: Tuber weight per plant of diploid potato (YS3 line). B: Tuber weight per plant of tetraploid potato (Favorita)
| [1] | Philippot L, Chenu C, Kappler A, et al. The interplay between microbial communities and soil properties [J]. Nat Rev Microbiol, 2024, 22(4): 226-239. |
| [2] | Kapoor D, Sharma P, Sharma MMM, et al. Exploring soil microbiota and their role in plant growth, stress tolerance, disease control and nutrient immobilizer [J]. Biocatal Agric Biotechnol, 2024, 61: 103358. |
| [3] | Wei XP, Xie BK, Wan C, et al. Enhancing soil health and plant growth through microbial fertilizers: mechanisms, benefits, and sustainable agricultural practices [J]. Agronomy, 2024, 14(3): 609. |
| [4] | Yu J, Goodarzi H, Shokat K. Microbes: next-generation fertilizers [J]. Nat Biotechnol, 2024, 42: 1164. |
| [5] | Jansson JK, McClure R, Egbert RG. Soil microbiome engineering for sustainability in a changing environment [J]. Nat Biotechnol, 2023, 41(12): 1716-1728. |
| [6] | 马莹, 曹梦圆, 石孝均, 等. 植物促生菌的功能及在可持续农业中的应用 [J]. 土壤学报, 2023, 60(6): 1555-1568. |
| Ma Y, Cao MY, Shi XJ, et al. Functions of plant growth-promoting bacteria and their application in sustainable agriculture [J]. Acta Pedol Sin, 2023, 60(6): 1555-1568. | |
| [7] | Xu XM, Dinesen C, Pioppi A, et al. Composing a microbial symphony: synthetic communities for promoting plant growth [J]. Trends Microbiol, 2025, 33(7): 738-751. |
| [8] | Zhou YY, Yang Z, Liu JG, et al. Crop rotation and native microbiome inoculation restore soil capacity to suppress a root disease [J]. Nat Commun, 2023, 14: 8126. |
| [9] | Qiu W, Kang J, Ye ZM, et al. Arbuscular mycorrhizal fungi build a bridge for soybeans to recruit Pseudomonas putida [J]. New Phytol, 2025, 246(3): 1276-1292. |
| [10] | Zhong Y, Xun WB, Wang XH, et al. Root-secreted bitter triterpene modulates the rhizosphere microbiota to improve plant fitness [J]. Nat Plants, 2022, 8(8): 887-896. |
| [11] | Liu Y, Jia BL, Ren Y, et al. Bacterial social interactions in synthetic Bacillus consortia enhance plant growth [J]. iMeta, 2025, 4(4): e70053. |
| [12] | Zhou SP, Ke X, Jin LQ, et al. Sustainable management and valorization of biomass wastes using synthetic microbial consortia [J]. Bioresour Technol, 2024, 395: 130391. |
| [13] | Roell GW, Zha J, Carr RR, et al. Engineering microbial consortia by division of labor [J]. Microb Cell Fact, 2019, 18: 35. |
| [14] | Du JF, Li Y, Ur-Rehman S, et al. Synergistically promoting plant health by harnessing synthetic microbial communities and prebiotics [J]. iScience, 2021, 24(8): 102918. |
| [15] | Coyte KZ, Schluter J, Foster KR. The ecology of the microbiome: Networks, competition, and stability [J]. Science, 2015, 350(6261): 663-666. |
| [16] | Zvinavashe AT, Lim E, Sun H, et al. A bioinspired approach to engineer seed microenvironment to boost germination and mitigate soil salinity [J]. Proc Natl Acad Sci U S A, 2019, 116(51): 25555-25561. |
| [17] | Poppeliers SW, Sánchez-Gil JJ, de Jonge R. Microbes to support plant health: understanding bioinoculant success in complex conditions [J]. Curr Opin Microbiol, 2023, 73: 102286. |
| [18] | Jin RT, Song J, Liu C, et al. Synthetic microbial communities: Novel strategies to enhance the quality of traditional fermented foods [J]. Comp Rev Food Sci Food Safe, 2024, 23(4): e13388. |
| [19] | Jiang YJ, Wu RF, Zhang WM, et al. Construction of stable microbial consortia for effective biochemical synthesis [J]. Trends Biotechnol, 2023, 41(11): 1430-1441. |
| [20] | Ragland CJ, Shih KY, Dinneny JR. Choreographing root architecture and rhizosphere interactions through synthetic biology [J]. Nat Commun, 2024, 15: 1370. |
| [21] | Schmitz L, Yan ZC, Schneijderberg M, et al. Synthetic bacterial community derived from a desert rhizosphere confers salt stress resilience to tomato in the presence of a soil microbiome [J]. ISME J, 2022, 16(8): 1907-1920. |
| [22] | Yang XX, Yuan RW, Yang SY, et al. A salt-tolerant growth-promoting phyllosphere microbial combination from mangrove plants and its mechanism for promoting salt tolerance in rice [J]. Microbiome, 2024, 12: 270. |
| [23] | Li DP, Qi ZH, Guo JY, et al. Study on the screening of high-efficiency salt and alkali-tolerant microbial agents and their roles and mechanisms in enhancing saline-alkaline soil remediation [J]. J Clean Prod, 2025, 519: 145992. |
| [24] | Kaur S, Egidi E, Qiu ZG, et al. Synthetic community improves crop performance and alters rhizosphere microbial communities [J]. J Sust Agri & Env, 2022, 1(2): 118-131. |
| [25] | Rojas Padilla J, Chaparro Encinas LA, Robles Montoya RI, et al. Promoción de crecimiento en trigo (Triticum turgidum L. subsp. durum) por la co-inoculación de cepas nativas de Bacillus aisladas del Valle del Yaqui, México [J]. N Sci, 2020, 12(24). |
| [26] | Santoyo G, Guzmán-Guzmán P, Parra-Cota FI, et al. Plant growth stimulation by microbial consortia [J]. Agronomy, 2021, 11(2): 219. |
| [27] | Xun WB, Ren Y, Yan H, et al. Sustained inhibition of maize seed-borne Fusarium using a Bacillus-dominated rhizospheric stable core microbiota with unique cooperative patterns [J]. Adv Sci, 2023, 10(5): 2205215. |
| [28] | Chai YN, Ge YF, Stoerger V, et al. High-resolution phenotyping of sorghum genotypic and phenotypic responses to low nitrogen and synthetic microbial communities [J]. Plant Cell Environ, 2021, 44(5): 1611-1626. |
| [29] | Yang N, Nesme J, Røder HL, et al. Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis [J]. NPJ Biofilms Microbiomes, 2021, 7: 82. |
| [30] | Wang ZH, Wang S, He Q, et al. Ecological design of high-performance synthetic microbial communities: from theoretical foundations to functional optimization [J]. ISME Commun, 2025, 5(1): ycaf133. |
| [31] | Ruan ZP, Chen K, Cao WM, et al. Engineering natural microbiomes toward enhanced bioremediation by microbiome modeling [J]. Nat Commun, 2024, 15: 4694. |
| [32] | Jing JY, Garbeva P, Raaijmakers JM, et al. Strategies for tailoring functional microbial synthetic communities [J]. ISME J, 2024, 18(1): wrae049. |
| [33] | Shayanthan A, Ordoñez PAC, Oresnik IJ. The role of synthetic microbial communities (SynCom) in sustainable agriculture [J]. Front Agron, 2022, 4: 896307. |
| [34] | Wei Z, Huang JF, Tan SY, et al. The congeneric strain Ralstonia pickettii QL-A6 of Ralstonia solanacearum as an effective biocontrol agent for bacterial wilt of tomato [J]. Biol Control, 2013, 65(2): 278-285. |
| [35] | Jiang HJ, Zhang XY, Ma CY, et al. Endophytic colonization of Phomopsis liquidambaris recruits rhizospheric Ralstonia by inducing acetic acid secretion to facilitate phosphorus uptake by Arachis hypogaea L. in continuously cropped soil [J]. Plant Soil, 2025, 508(1/2): 255-274. |
| [36] | Kumar V, Kumari A, Pandey M, et al. Molecular mechanism of radio-resistance and heavy metal tolerance adaptation in microbes [M]//Microbial Extremozymes. Amsterdam: Elsevier 2022: 275-293. |
| [37] | Kailasan N S, Vamanrao V B. Isolation and characterization of ralstonia pickettii-a novel phosphate solubilizing bacterium from pomegranate rhizosphere from western india [J]. Int J Life Sci Biotechnol Pharma Res, 2015, 4(1): 1. |
| [38] | 李婧璇, 薛娇, 王世梅, 等. 生物有机肥与茎部注射有益菌联合高效防控番茄土传青枯病 [J]. 土壤, 2024, 56(3): 480-487. |
| Li JX, Xue J, Wang SM, et al. Combination of bio-organic fertilizer and stem injection of beneficial bacteria effectively control soil-borne bacterial wilt of tomato [J]. Soils, 2024, 56(3): 480-487. | |
| [39] | Monteux S, Keuper F, Fontaine S, et al. Carbon and nitrogen cycling in Yedoma permafrost controlled by microbial functional limitations [J]. Nat Geosci, 2020, 13(12): 794-798. |
| [40] | Wang W, Xia YW, Zhang PP, et al. Narrow-spectrum resource-utilizing bacteria drive the stability of synthetic communities through enhancing metabolic interactions [J]. Nat Commun, 2025, 16: 6088. |
| [41] | Gonçalves OS, Creevey CJ, Santana MF. Designing a synthetic microbial community through genome metabolic modeling to enhance plant-microbe interaction [J]. Environ Microbiome, 2023, 18: 81. |
| [42] | Sibanyoni NR, Piater LA, Kerchev P, et al. Metabolomic insights into cross-feeding interactions between priestia megaterium PM and Pseudomonas fluorescens NO4: unveiling microbial communication in plant growth-promoting rhizobacteria [J]. Microb Ecol, 2025, 88: 76. |
| [43] | Wang DY, Hunt KA, Candry P, et al. Cross-feedings, competition, and positive and negative synergies in a four-species synthetic community for anaerobic degradation of cellulose to methane [J]. mBio, 2023, 14(2): e03189-e03122. |
| [44] | Li Q, Li HC, Yang Z, et al. Plant growth-promoting rhizobacterium Pseudomonas sp. CM11 specifically induces lateral roots [J]. New Phytol, 2022, 235(4): 1575-1588. |
| [45] | Jiang XL, Shen TL, Han ML, et al. Aluminum-tolerant, growth-promoting rhizosphere bacteria improve growth and alleviate aluminum stress in tea plants [J]. Hortic Plant J, 2025. |
| [46] | Wu JD, Liu SJ, Zhang HY, et al. Flavones enrich rhizosphere Pseudomonas to enhance nitrogen utilization and secondary root growth in Populus [J]. Nat Commun, 2025, 16: 1461. |
| [47] | Li YJ, Li RR, Liu R, et al. A simplified SynCom based on core-helper strain interactions enhances symbiotic nitrogen fixation in soybean [J]. J Integr Plant Biol, 2025, 67(6): 1582-1598. |
| [48] | Li L, Cheng KX, Du Y, et al. Rhizosphere microbes From Populus euphratica Conferred salt stress resistance to Populus alba × Populus glandulosa [J]. Plant Cell Environ, 2025, 48(12): 8743-8755. |
| [49] | Dong H, Wang YY, Di YC, et al. Plant growth-promoting rhizobacteria Pseudomonas aeruginosa HG28-5 improves salt tolerance by regulating Na+/K+ homeostasis and ABA signaling pathway in tomato [J]. Microbiol Res, 2024, 283: 127707. |
| [50] | 邵嘉朱, 吕雯, 廖鑫琳, 等. 大豆根际促生菌的分离、鉴定及其耐盐促生作用 [J]. 中国农业科学, 2024, 57(21): 4248-4263. |
| Shao JZ, Lü W, Liao XL, et al. Isolation and identification of soybean rhizosphere growth-promoting bacteria and their salt tolerance and growth-promoting effects [J]. Sci Agric Sin, 2024, 57(21): 4248-4263. | |
| [51] | Zhou YY, Liu DH, Li FQ, et al. Superiority of native soil core microbiomes in supporting plant growth [J]. Nat Commun, 2024, 15: 6599. |
| [52] | Hong S, Yuan XF, Yang JM, et al. Selection of rhizosphere communities of diverse rotation crops reveals unique core microbiome associated with reduced banana Fusarium wilt disease [J]. New Phytol, 2023, 238(5): 2194-2209. |
| [53] | Zheng YF, Cao XW, Zhou YN, et al. Purines enrich root-associated Pseudomonas and improve wild soybean growth under salt stress [J]. Nat Commun, 2024, 15: 3520. |
| [54] | Qian JJ, Akçay E. The balance of interaction types determines the assembly and stability of ecological communities [J]. Nat Ecol Evol, 2020, 4(3): 356-365. |
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