生物技术通报 ›› 2016, Vol. 32 ›› Issue (4): 87-93.doi: 10.13560/j.cnki.biotech.bull.1985.2016.04.011

• 研究报告 • 上一篇    下一篇

三个绵羊群体MC4R基因多态性及生物信息学分析

刘娇娇12,马友记12   

  1. 1. 甘肃农业大学 动物科学技术学院,兰州 730070;
    2. 甘肃省肉羊繁育生物技术工程实验室,民勤 733300
  • 收稿日期:2015-06-23 出版日期:2016-04-25 发布日期:2016-04-26
  • 作者简介:刘娇娇,女,硕士研究生,研究方向:动物生产学;E-mail:714643318@qq.com
  • 基金资助:
    国家科技十二·五支撑计划(2011BAD28B05),甘肃省农业生物技术研究与应用开发项目(GNSW-2012-19),甘肃省高校基本科研业务费(2014)

Polymorphism and Bioinformatics Analysis of Gene MC4R in 3 Sheep Populations

LIU Jiao-jiao12, MA You-ji12   

  1. 1. Faculty of Animal Science and Technology,Gansu Agriculture University,Lanzhou 730070;
    2. Gansu Engineering Laboratory of Sheep Breeding Biotechnology,Minqin 733300
  • Received:2015-06-23 Published:2016-04-25 Online:2016-04-26

摘要: 旨在探讨绵羊黑素皮质素受体-4(melanocortin-4 receptor,MC4R)的分子机理,采用PCR-SSCP方法对3个绵羊群体(甘肃肉用绵羊新品种群、小尾寒羊和湖羊)的MC4R基因外显子进行多态性检测和生物信息学分析。结果表明,3个绵羊群体均存在3种基因型AA型、AB型和BB型,优势基因型为BB,其中优势等位基因为B;测序结果表明,野生型BB型和突变型AB型相比,AB型个体在该基因编码区第511位点发生G→A突变,第495位发生C→T突变;AA型个体在该基因编码区第511位点发生G→A突变,出现AA的纯合,第495位发生C→T突变,出现CC纯合;3个绵羊群体中小尾寒羊的多态信息含量属于中度多态(0.25

关键词: 绵羊, 黑素皮质素受体-4, 多态性, 生物信息学

Abstract: To investigate the molecular mechanism of Melanocortin-4 receptor(MC4R),PCR-SSCP was used to detect the polymorphism and analyze the bioinformatics of gene MC4R exon in 3 sheep populations(Gansu meat sheep new breeding population,Small Tail Han sheep,and Hu sheep). The results showed that 3 genotypes of AA,AB and BB existed in 3 populations,and the dominant genotype was BB,the preponderant allele was B. The sequencing analysis indicated that comparing wild BB and mutated AB,G→A mutation in locus 511 and T→C mutation in locus 495 happened in AB;G→A mutation in locus 511 with AA homozygosity and T→C mutation in locus 495 with CC homozygosity happened in AA. The PIC of Small Tail Han sheep was moderately polymorphic(0.25 < PIC < 0.50),Gansu meat sheep new breeding population and Hu sheep belonged to low polymorphism(PIC < 0.25). Except the Hu sheep,the other 2 sheep breeds were in Hardy-Weinberg equilibrium by χ2 test. Bioinformatics analysis showed that the amino acid sequence of MC4R had hydrophobic region significantly,7 transmembrane helical regions and signal peptide. The main elements in the second structure of the encoded protein were the α helix and random coil. Homology analysis demonstrated that the similarity of gene MC4R in sheep with goat,cattle,pig,human,and gorilla was 97%,94%,81%,83% and 83% respectively,indicating that MC4R was an evolutionarily conserved protein,and played an important role in growth o f sheep.

Key words: sheep, gene MC4R, polymorphism, bioinformatics