Biotechnology Bulletin ›› 2024, Vol. 40 ›› Issue (8): 186-198.doi: 10.13560/j.cnki.biotech.bull.1985.2023-0822
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LI Yong-hui1(), BAO Xing-xing1, DUAN Yi-ke2, ZHAO Yun-xia1, YU Xiang-li1, CHEN Yao1, ZHANG Yan-zhao1
Received:
2023-08-22
Online:
2024-08-26
Published:
2024-07-02
Contact:
LI Yong-hui
E-mail:liyonghui@lynu.edu.cn
LI Yong-hui, BAO Xing-xing, DUAN Yi-ke, ZHAO Yun-xia, YU Xiang-li, CHEN Yao, ZHANG Yan-zhao. Genome-wide Identification and Expression Features Analysis of the bZIP Family in Rhododendron henanense subsp. lingbaoense[J]. Biotechnology Bulletin, 2024, 40(8): 186-198.
引物名称Primer name | 引物序列Primer sequence(5'-3') |
---|---|
EF1α-F | TGTCATCGATGCTCCTGGAC |
EF1α-R | TCTCGGGTCTGACCATCCTT |
RhlbZIP4-F | GCAATTTCGGCTCTGTGAGT |
RhlbZIP4-R | AAGTGGACGGTGAGATTGGT |
RhlbZIP7-F | GGCCATGGCATCTCATCAAG |
RhlbZIP7-R | ACGTTGGGATGTCTCCCATT |
RhlbZIP41-F | GAAAGCACACACGGCTTACT |
RhlbZIP41-R | TCGAGATTTCGGCTTCGAGA |
Table 1 Primer sequences for RT-qPCR
引物名称Primer name | 引物序列Primer sequence(5'-3') |
---|---|
EF1α-F | TGTCATCGATGCTCCTGGAC |
EF1α-R | TCTCGGGTCTGACCATCCTT |
RhlbZIP4-F | GCAATTTCGGCTCTGTGAGT |
RhlbZIP4-R | AAGTGGACGGTGAGATTGGT |
RhlbZIP7-F | GGCCATGGCATCTCATCAAG |
RhlbZIP7-R | ACGTTGGGATGTCTCCCATT |
RhlbZIP41-F | GAAAGCACACACGGCTTACT |
RhlbZIP41-R | TCGAGATTTCGGCTTCGAGA |
Fig. 2 Phylogenetic relationship(A), motif composition(B), and gene structure combination(C)of members of the bZIP family of R. henanense subsp. lingbaoense
基因对 Gene pairs | Ka | Ks | Ka/Ks值 |
---|---|---|---|
RhlbZIP-2&RhlbZIP-52 | 0.965 8 | 1.110 4 | 0.869 8 |
RhlbZIP-3&RhlbZIP-54 | 5.273 6 | 2.352 6 | 2.241 6 |
RhlbZIP-4&RhlbZIP-25 | 2.243 5 | 3.787 2 | 0.592 4 |
RhlbZIP-7&RhlbZIP-18 | 4.907 7 | 2.147 5 | 2.285 3 |
RhlbZIP-12&RhlbZIP-21 | 1.765 8 | 3.384 7 | 0.521 7 |
RhlbZIP-13&RhlbZIP-14 | 1.047 2 | 1.365 0 | 0.767 1 |
RhlbZIP-15&RhlbZIP-38 | 1.438 8 | 2.038 5 | 0.705 8 |
RhlbZIP-19&RhlbZIP-33 | 0.970 8 | 1.108 9 | 0.875 5 |
RhlbZIP-20&RhlbZIP-32 | 1.027 2 | 0.905 2 | 1.134 8 |
RhlbZIP-26&RhlbZIP-53 | 2.080 5 | 3.975 9 | 0.523 3 |
RhlbZIP-28&RhlbZIP-46 | 1.047 1 | 0.846 9 | 1.236 5 |
RhlbZIP-30&RhlbZIP-43 | 0.962 8 | 1.134 1 | 0.849 0 |
RhlbZIP-31&RhlbZIP-34 | 0.931 3 | 1.280 4 | 0.727 4 |
RhlbZIP-36&RhlbZIP-48 | 2.289 1 | 4.049 4 | 0.565 3 |
RhlbZIP-37&RhlbZIP-40 | 1.020 4 | 0.936 5 | 1.089 6 |
RhlbZIP-44&RhlbZIP-55 | 0.976 2 | 1.078 6 | 0.905 1 |
Table 2 Ks, Ka and Ka/Ks ratios of the sixteen gene pairs
基因对 Gene pairs | Ka | Ks | Ka/Ks值 |
---|---|---|---|
RhlbZIP-2&RhlbZIP-52 | 0.965 8 | 1.110 4 | 0.869 8 |
RhlbZIP-3&RhlbZIP-54 | 5.273 6 | 2.352 6 | 2.241 6 |
RhlbZIP-4&RhlbZIP-25 | 2.243 5 | 3.787 2 | 0.592 4 |
RhlbZIP-7&RhlbZIP-18 | 4.907 7 | 2.147 5 | 2.285 3 |
RhlbZIP-12&RhlbZIP-21 | 1.765 8 | 3.384 7 | 0.521 7 |
RhlbZIP-13&RhlbZIP-14 | 1.047 2 | 1.365 0 | 0.767 1 |
RhlbZIP-15&RhlbZIP-38 | 1.438 8 | 2.038 5 | 0.705 8 |
RhlbZIP-19&RhlbZIP-33 | 0.970 8 | 1.108 9 | 0.875 5 |
RhlbZIP-20&RhlbZIP-32 | 1.027 2 | 0.905 2 | 1.134 8 |
RhlbZIP-26&RhlbZIP-53 | 2.080 5 | 3.975 9 | 0.523 3 |
RhlbZIP-28&RhlbZIP-46 | 1.047 1 | 0.846 9 | 1.236 5 |
RhlbZIP-30&RhlbZIP-43 | 0.962 8 | 1.134 1 | 0.849 0 |
RhlbZIP-31&RhlbZIP-34 | 0.931 3 | 1.280 4 | 0.727 4 |
RhlbZIP-36&RhlbZIP-48 | 2.289 1 | 4.049 4 | 0.565 3 |
RhlbZIP-37&RhlbZIP-40 | 1.020 4 | 0.936 5 | 1.089 6 |
RhlbZIP-44&RhlbZIP-55 | 0.976 2 | 1.078 6 | 0.905 1 |
Fig. 7 Hierarchical clustering of expression profiles of RhlbZIP genes in different tissues(root, stem, leaf, flower, and hypocotyl) log10(FPKM)values showed according to the color code(Top right)
Fig. 8 Expression analysis of three genes of in R. henanense subsp. lingbaoense under different treatments Compared with 0 h control, * P< 0.05, **P< 0.01, ***P<0. 001
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