FAN Zi-ming1, ZOU Yu1, YE Rong-tai1, BAI Zhong-hu1,2, LIU Xiu-xia1,2(
)
Received:2026-02-09
Online:2026-07-14
Contact:
LIU Xiu-xia
E-mail:liuxiuxia@jiangnan.edu.cn
FAN Zi-ming, ZOU Yu, YE Rong-tai, BAI Zhong-hu, LIU Xiu-xia. Construction of Engineered Corynebacterium glutamicum for Heterologous Protein Expression Using Acid Hydrolysate[J]. Biotechnology Bulletin, doi: 10.13560/j.cnki.biotech.bull.1985.2026-0197.
菌株和质粒 Strains and plasmids | 特征Feature |
|---|---|
| 菌株 | |
| E. coli DH5α | 野生型,用于质粒克隆 |
| C. glutamicum ATCC13032 | 野生型 |
| Evo90 | C. glutamicum ATCC13032衍生菌株,针对乙酸钠与葡萄糖混合碳源进行适应性实验室进化得到的菌株 |
| Evo90-H36M | Evo90衍生菌株,在Evo90基因组中用H36启动子[ |
| 质粒 | |
| pXMJ19 | C. glutamicum/E. coli穿梭载体,氯霉素 |
| pXMJ19-Control | pXMJ19,含有Ptac-RBS-T1-T2表达盒 |
| pXMJ19-ino-1 | pXMJ19-Control,含有ino-1 |
| pXMJ19-msrA | pXMJ19-Control,含有msrA |
| pEC-XK99E | 大肠杆菌-谷氨酸棒杆菌穿梭质粒,卡那霉素 |
| pEC-Control | pEC-XK99E,含有H36-RBS-T1-T2表达盒 |
| pEC-G1 | pEC-Control,含有ack-pta基因序列 |
| pEC-G2 | pEC-Control,含有ADY2基因序列 |
| pEC-G3 | pEC-Control,含有ATO2基因序列 |
| pEC-G4 | pEC-G1,含有RBS-ADY2基因序列 |
| pEC-G5 | pEC-G1,含有RBS-ATO2基因序列 |
| pEC-G2-mCherry | pEC-G2,含有RBS、CspB信号肽和mCherry基因序列 |
| pEC-G2-amyE | pEC-G2,含有RBS、CspB信号肽和amyE基因序列 |
| pEC-G2-VHH | pEC-G2,含有RBS、CspB信号肽和VHH基因序列 |
| pK18mobsacB | C. glutamicum/E. coli穿梭载体(oriV E. coli, sacB, lacZα, KanR) |
| pK18-H36M | pK18mobsacB包含H36启动子插入同源臂序列 |
Table 1 Strains and plasmids used in this study
菌株和质粒 Strains and plasmids | 特征Feature |
|---|---|
| 菌株 | |
| E. coli DH5α | 野生型,用于质粒克隆 |
| C. glutamicum ATCC13032 | 野生型 |
| Evo90 | C. glutamicum ATCC13032衍生菌株,针对乙酸钠与葡萄糖混合碳源进行适应性实验室进化得到的菌株 |
| Evo90-H36M | Evo90衍生菌株,在Evo90基因组中用H36启动子[ |
| 质粒 | |
| pXMJ19 | C. glutamicum/E. coli穿梭载体,氯霉素 |
| pXMJ19-Control | pXMJ19,含有Ptac-RBS-T1-T2表达盒 |
| pXMJ19-ino-1 | pXMJ19-Control,含有ino-1 |
| pXMJ19-msrA | pXMJ19-Control,含有msrA |
| pEC-XK99E | 大肠杆菌-谷氨酸棒杆菌穿梭质粒,卡那霉素 |
| pEC-Control | pEC-XK99E,含有H36-RBS-T1-T2表达盒 |
| pEC-G1 | pEC-Control,含有ack-pta基因序列 |
| pEC-G2 | pEC-Control,含有ADY2基因序列 |
| pEC-G3 | pEC-Control,含有ATO2基因序列 |
| pEC-G4 | pEC-G1,含有RBS-ADY2基因序列 |
| pEC-G5 | pEC-G1,含有RBS-ATO2基因序列 |
| pEC-G2-mCherry | pEC-G2,含有RBS、CspB信号肽和mCherry基因序列 |
| pEC-G2-amyE | pEC-G2,含有RBS、CspB信号肽和amyE基因序列 |
| pEC-G2-VHH | pEC-G2,含有RBS、CspB信号肽和VHH基因序列 |
| pK18mobsacB | C. glutamicum/E. coli穿梭载体(oriV E. coli, sacB, lacZα, KanR) |
| pK18-H36M | pK18mobsacB包含H36启动子插入同源臂序列 |
| 引物名称 Primers | 序列 Sequence (5′-3′) | 用途 Description |
|---|---|---|
| pXMJ19-F | GGATCCCCGGGTACC | pXMJ19-Control载体线性化 |
| pXMJ19-R | TCCTGGAGAGTCGACCTG | |
| ino-F | GTCGACTCTCCAGGAGGACATACAATGAGCACGTCCACCA | 构建pXMJ19-ino-1质粒 |
| ino-R | GGTACCCGGGGATCCTTACGCCTCGATGATGAATG | |
| msrA-F | GTCGACTCTCCAGGAGGACATACAATGGCATGGTTTTTCGCA | 构建pXMJ19-msrA质粒 |
| msrA-R | GGTACCCGGGGATCCTTAAGCTTCTACCCCGCAC | |
| 99k-F | CCATGCGAGAGTAGGGAACTGC | pEC-Control载体线性化 |
| 99k-R | TTTTTTTCCTCCTTTTCTCGAGG | |
| Ack-F | AAAGGAGGAAAAAAAATGAGCGCCGAACTCTTTG | 构建pEC-G1质粒 |
| Ack-R | CCTACTCTCGCATGGTTAAGCGAACTTCACCGCGTA | |
| ADY-F | AAAGGAGGAAAAAAAATGTCTGACAAGGAACAAACGAGC | 构建pEC-G2质粒 |
| ADY-R | CCTACTCTCGCATGGTTAAAAGATTACCCTTTCAGTAGATGGTAATGGG | |
| ATO-F | AAAGGAGGAAAAAAAATGTCTGACAGAGAACAAAGCAG | 构建pEC-G3质粒 |
| ATO-R | CCTACTCTCGCATGGTTAGAAGAACACCTTATCATTGCTAGGT | |
| 1229-HR-ack-F | CCATGCGAGAGTAGGGAACTG | pEC-G1载体线性化 |
| 1229-HR-ack-R | TTAAGCGAACTTCACCGCGTACC | |
| 1229-ADY-F | GTGAAGTTCGCTTAACCAGGAGGACATACACTAATGTCTGACAAGGAACAAACG | 构建pEC-G4质粒 |
| 1229-ADY-R | CCTACTCTCGCATGGTTAAAAGATTACCCTTTCAGTAGATGGTAATGGG | |
| 1229-ATO-F | GTGAAGTTCGCTTAACCAGGAGGACATACACTAATGTCTGACAGAGAACAAAG | 构建pEC-G5质粒 |
| 1229-ATO-R | CCTACTCTCGCATGGTTAGAAGAACACCTTATCATTGCTAGGTAATGC | |
| HR-99k-ADY-F | CCATGCGAGAGTAGGGAACTGC | pEC-G2载体线性化 |
| HR-99k-ADY-R | TGTATGTCCTCCTGGTAAAAGATTACCCTTTCAGTAGATGGTAATGGG | |
| CspB-F | CCAGGAGGACATACAATGTTTAACAATCGTATCCGC | 扩增CspB片段 |
| CspB-R | TTCCTGAGCGAATGCTG | |
| 1115-mChe-F | GCATTCGCTCAGGAAGTGAGCAAGGGCGAGGAG | 构建pEC-G2-mCherry质粒 |
| 1115-mChe-R | CCTACTCTCGCATGGTTACTTGTACAGCTCGTCCATGCC | |
| 1115-AL-F | GCATTCGCTCAGGAAGAAACGGCGAACAAATCGA | 构建pEC-G2-amyE质粒 |
| 1115-AL-R | CCTACTCTCGCATGGTTAATGGGGAAGAGAACCGC | |
| 1115-VHH-F | GCATTCGCTCAGGAACAGGTCCAACTGCAAGAAAGC | 构建pEC-G2-VHH质粒 |
| 1115-VHH-R | CCTACTCTCGCATGGTTATGAAGAGACGGTCACCTGGG | |
| Mrp1-1-F | CATGATTACGAATTCCGTAGTTGATCGAGTTGGTC | 构建pK18-H36M质粒,Mrp1启动子替换的上游同源臂 |
| Mrp1-1-R | CTGGGCCCGTTAATAGCTAAACCTCGAAACAATAAC | |
| Mrp1-2-F | GTAGCATGGGATCCAAGGAGGAAAAAAAATGAGTTTGCTATTTGTTGTGGCGCTTGC | 构建pK18-H36M质粒,Mrp1启动子替换的下游同源臂 |
| Mrp1-2-R | GTGCCAAGCTTGCATTACCCATGCCGACGATAATCAGC | |
| H36-F | TATTAACGGGCCCAGGGTGG | 构建pK18-H36M质粒,扩增H36片段 |
| H36-R | TTTTTTTCCTCCTTGGATCCCATGCTACTCCTACC |
Table 2 Primers used in this study
| 引物名称 Primers | 序列 Sequence (5′-3′) | 用途 Description |
|---|---|---|
| pXMJ19-F | GGATCCCCGGGTACC | pXMJ19-Control载体线性化 |
| pXMJ19-R | TCCTGGAGAGTCGACCTG | |
| ino-F | GTCGACTCTCCAGGAGGACATACAATGAGCACGTCCACCA | 构建pXMJ19-ino-1质粒 |
| ino-R | GGTACCCGGGGATCCTTACGCCTCGATGATGAATG | |
| msrA-F | GTCGACTCTCCAGGAGGACATACAATGGCATGGTTTTTCGCA | 构建pXMJ19-msrA质粒 |
| msrA-R | GGTACCCGGGGATCCTTAAGCTTCTACCCCGCAC | |
| 99k-F | CCATGCGAGAGTAGGGAACTGC | pEC-Control载体线性化 |
| 99k-R | TTTTTTTCCTCCTTTTCTCGAGG | |
| Ack-F | AAAGGAGGAAAAAAAATGAGCGCCGAACTCTTTG | 构建pEC-G1质粒 |
| Ack-R | CCTACTCTCGCATGGTTAAGCGAACTTCACCGCGTA | |
| ADY-F | AAAGGAGGAAAAAAAATGTCTGACAAGGAACAAACGAGC | 构建pEC-G2质粒 |
| ADY-R | CCTACTCTCGCATGGTTAAAAGATTACCCTTTCAGTAGATGGTAATGGG | |
| ATO-F | AAAGGAGGAAAAAAAATGTCTGACAGAGAACAAAGCAG | 构建pEC-G3质粒 |
| ATO-R | CCTACTCTCGCATGGTTAGAAGAACACCTTATCATTGCTAGGT | |
| 1229-HR-ack-F | CCATGCGAGAGTAGGGAACTG | pEC-G1载体线性化 |
| 1229-HR-ack-R | TTAAGCGAACTTCACCGCGTACC | |
| 1229-ADY-F | GTGAAGTTCGCTTAACCAGGAGGACATACACTAATGTCTGACAAGGAACAAACG | 构建pEC-G4质粒 |
| 1229-ADY-R | CCTACTCTCGCATGGTTAAAAGATTACCCTTTCAGTAGATGGTAATGGG | |
| 1229-ATO-F | GTGAAGTTCGCTTAACCAGGAGGACATACACTAATGTCTGACAGAGAACAAAG | 构建pEC-G5质粒 |
| 1229-ATO-R | CCTACTCTCGCATGGTTAGAAGAACACCTTATCATTGCTAGGTAATGC | |
| HR-99k-ADY-F | CCATGCGAGAGTAGGGAACTGC | pEC-G2载体线性化 |
| HR-99k-ADY-R | TGTATGTCCTCCTGGTAAAAGATTACCCTTTCAGTAGATGGTAATGGG | |
| CspB-F | CCAGGAGGACATACAATGTTTAACAATCGTATCCGC | 扩增CspB片段 |
| CspB-R | TTCCTGAGCGAATGCTG | |
| 1115-mChe-F | GCATTCGCTCAGGAAGTGAGCAAGGGCGAGGAG | 构建pEC-G2-mCherry质粒 |
| 1115-mChe-R | CCTACTCTCGCATGGTTACTTGTACAGCTCGTCCATGCC | |
| 1115-AL-F | GCATTCGCTCAGGAAGAAACGGCGAACAAATCGA | 构建pEC-G2-amyE质粒 |
| 1115-AL-R | CCTACTCTCGCATGGTTAATGGGGAAGAGAACCGC | |
| 1115-VHH-F | GCATTCGCTCAGGAACAGGTCCAACTGCAAGAAAGC | 构建pEC-G2-VHH质粒 |
| 1115-VHH-R | CCTACTCTCGCATGGTTATGAAGAGACGGTCACCTGGG | |
| Mrp1-1-F | CATGATTACGAATTCCGTAGTTGATCGAGTTGGTC | 构建pK18-H36M质粒,Mrp1启动子替换的上游同源臂 |
| Mrp1-1-R | CTGGGCCCGTTAATAGCTAAACCTCGAAACAATAAC | |
| Mrp1-2-F | GTAGCATGGGATCCAAGGAGGAAAAAAAATGAGTTTGCTATTTGTTGTGGCGCTTGC | 构建pK18-H36M质粒,Mrp1启动子替换的下游同源臂 |
| Mrp1-2-R | GTGCCAAGCTTGCATTACCCATGCCGACGATAATCAGC | |
| H36-F | TATTAACGGGCCCAGGGTGG | 构建pK18-H36M质粒,扩增H36片段 |
| H36-R | TTTTTTTCCTCCTTGGATCCCATGCTACTCCTACC |
Fig. 1 Growth of the wild-type strain WT in hydrolysateA, B: Growth and substrate consumption of the wild‑type (WT) strain in different medium. C: Cell density and residual substrate of the WT strain cultivated in CGXII medium containing different carbon sources for varied durations (samples were taken at 24 h for the glucose group and at 120 h for the xylose group)
Fig. 2 Screening of key ingredients and antioxidant genesA: Growth of the wild-type (WT) strain in hydrolysate H supplemented with different components. B: Growth of engineered strains Cg/pXMJ19-ino-1 and Cg/pXMJ19-msrA in hydrolysate H+
Fig. 3 Adaptive laboratory evolution and performance validation of the evolved strain Evo90A: Growth of the wild‑type (WT) strain in CGXII medium supplemented with different carbon sources. B: Cell growth during serial subculturing. C: Growth comparison between Evo90 and the WT strain
| 类型 Type | 位点 Site | 突变 Mutation | 氨基酸变化 Change of amino acid | 基因 Gene | 蛋白名称 Protein |
|---|---|---|---|---|---|
| 单碱基突变 | 32141 | C→T | - | Cgl0031 | ABC-type transporter, permease components |
| 274977 | T→C | - | Cgl0255 | Catalase | |
| 364652 | A→G | K→E | Cgl0344 | ATPases involved in chromosome partitioning | |
| 364912 | A→C | E→D | Cgl0344 | ATPases involved in chromosome partitioning | |
| 387460 | T→C | - | Cgl0365 | Hypothetical protein | |
| 736480 | T→C | V→A | Cgl0716 | Hypothetical protein | |
| 770809 | G→A | L→F | Cgl0738 | Type II restriction enzyme, methylase subunits | |
| 1279070 | T→G | D→E | Cgl1212 | F0F1-type ATP synthase beta subunit | |
| 1751737 | G→A | V→I | Cgl1651 | Hypothetical protein | |
| 2036724 | A→C | - | Cgl1928 | Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains | |
| 2041951 | G→T | G→V | Cgl1934 | Transcriptional regulators of sugar metabolism | |
| 2058943 | A→G | S→P | Cgl1949 | 2-methylthioadenine synthetase | |
| 2060507 | C→T | - | Cgl1951 | ABC-type transporter, periplasmic component (glutamate) | |
| 2083859 | T→A | - | Cgl1975 | Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) | |
| 2160737 | C→T | P→L | Cgl2047 | Hypothetical protein | |
| 2425773 | G→A | - | Cgl2457 | Alkaline phosphatase | |
| 2602951 | C→T | - | Cgl2460 | ABC-type transporter, permease components | |
| 2605561 | C→T | - | Cgl2505 | Hypothetical membrane protein | |
| 2655586 | C→T | A→T | Cgl2575 | ABC-type transporter, periplasmic component | |
| 2737632 | T→C | - | Cgl2587 | Predicted membrane proteins, hemolysin III homologs | |
| 3156189 | T→G | - | Cgl3077 | Hypothetical membrane protein | |
| 3286754 | G→A | - | Cgl0344 | ATPases involved in chromosome partitioning | |
| 碱基缺失 | 364006 | G→- | - | Cgl0657 | Uncharacterized protein involved in propionate catabolism |
| 671706 | A→- | - | Cgl1992 | ABC-type transporter, permease components | |
| 2296630 | C→- | - | Cgl2457 | Alkaline phosphatase | |
| 碱基插入 | 2103241 | GGCCCTTCCGGTTTTGGGGTACATCACAGAACCTGGGCTAGCGGTGTAGACCCGAAAATAAACGAGCCTT | - | Cgl2168 | Hypothetical membrane protein |
Table 3 Whole-genome resequencing results of Evo90 and WT
| 类型 Type | 位点 Site | 突变 Mutation | 氨基酸变化 Change of amino acid | 基因 Gene | 蛋白名称 Protein |
|---|---|---|---|---|---|
| 单碱基突变 | 32141 | C→T | - | Cgl0031 | ABC-type transporter, permease components |
| 274977 | T→C | - | Cgl0255 | Catalase | |
| 364652 | A→G | K→E | Cgl0344 | ATPases involved in chromosome partitioning | |
| 364912 | A→C | E→D | Cgl0344 | ATPases involved in chromosome partitioning | |
| 387460 | T→C | - | Cgl0365 | Hypothetical protein | |
| 736480 | T→C | V→A | Cgl0716 | Hypothetical protein | |
| 770809 | G→A | L→F | Cgl0738 | Type II restriction enzyme, methylase subunits | |
| 1279070 | T→G | D→E | Cgl1212 | F0F1-type ATP synthase beta subunit | |
| 1751737 | G→A | V→I | Cgl1651 | Hypothetical protein | |
| 2036724 | A→C | - | Cgl1928 | Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains | |
| 2041951 | G→T | G→V | Cgl1934 | Transcriptional regulators of sugar metabolism | |
| 2058943 | A→G | S→P | Cgl1949 | 2-methylthioadenine synthetase | |
| 2060507 | C→T | - | Cgl1951 | ABC-type transporter, periplasmic component (glutamate) | |
| 2083859 | T→A | - | Cgl1975 | Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) | |
| 2160737 | C→T | P→L | Cgl2047 | Hypothetical protein | |
| 2425773 | G→A | - | Cgl2457 | Alkaline phosphatase | |
| 2602951 | C→T | - | Cgl2460 | ABC-type transporter, permease components | |
| 2605561 | C→T | - | Cgl2505 | Hypothetical membrane protein | |
| 2655586 | C→T | A→T | Cgl2575 | ABC-type transporter, periplasmic component | |
| 2737632 | T→C | - | Cgl2587 | Predicted membrane proteins, hemolysin III homologs | |
| 3156189 | T→G | - | Cgl3077 | Hypothetical membrane protein | |
| 3286754 | G→A | - | Cgl0344 | ATPases involved in chromosome partitioning | |
| 碱基缺失 | 364006 | G→- | - | Cgl0657 | Uncharacterized protein involved in propionate catabolism |
| 671706 | A→- | - | Cgl1992 | ABC-type transporter, permease components | |
| 2296630 | C→- | - | Cgl2457 | Alkaline phosphatase | |
| 碱基插入 | 2103241 | GGCCCTTCCGGTTTTGGGGTACATCACAGAACCTGGGCTAGCGGTGTAGACCCGAAAATAAACGAGCCTT | - | Cgl2168 | Hypothetical membrane protein |
Fig. 4 Results of overexpression of acetic acid utilization-related genesA: Growth comparison between Evo90-H36M and Evo90. B: Schematic diagram of the construction of pEC-G1 to pEC-G5 plasmids. C: Growth comparison of Evo90/pEC-G1 to G5. D: Growth comparison between the superior strain and the control
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