Biotechnology Bulletin ›› 2021, Vol. 37 ›› Issue (3): 35-43.doi: 10.13560/j.cnki.biotech.bull.1985.2020-0852
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LI Xin-yue(), ZHANG Jin-fang, XU Xiao-jian, LU Fu-ping, LI Yu()
Received:
2020-07-11
Online:
2021-03-26
Published:
2021-04-02
Contact:
LI Yu
E-mail:lixinyue941@126.com;liyu@tust.edu.cn
LI Xin-yue, ZHANG Jin-fang, XU Xiao-jian, LU Fu-ping, LI Yu. Effects of Spore Formation Related Gene Deletion on Biomass and Extracellular Enzyme Expression of Bacillus amyloliquefaciens[J]. Biotechnology Bulletin, 2021, 37(3): 35-43.
菌株/质粒 | 特征/目的 | 来源 | |
---|---|---|---|
菌株 | E.coli JM109 | 敲除载体构建 | 中国科学院 |
E.coli EC135 pM.Bam | 对质粒DNA进行甲基化修饰 | 中国科学院 | |
B.amyloliquefaciens TCCC111018Δupp(BA Δupp) | 出发菌株 | 本研究 | |
B.amyloliquefaciens TCCC111018Δspo0A(BA Δspo0A) | spo0A 基因敲除 | 本研究 | |
B.amyloliquefaciens TCCC111018ΔsigE(BA ΔsigE) | sig E基因敲除 | 本研究 | |
B.amyloliquefaciens TCCC111018ΔsigF(BA ΔsigF) | sigF 基因敲除 | 本研究 | |
质粒 | pWH-T2 | 穿梭表达载体 | 湖北大学 |
pWH-T2-Δspo0A | 敲除载体,spo0A基因敲除 | 本研究 | |
pWH-T2-ΔsigE | 敲除载体,sigE 基因敲除 | 本研究 | |
pWH-T2-ΔsigF | 敲除载体,sigF 基因敲除 | 本研究 | |
pLY-1 | 耐酸性α-淀粉酶表达载体 | 本实验室 | |
pLY-2 | 碱性蛋白酶表达载体 | 本实验室 |
菌株/质粒 | 特征/目的 | 来源 | |
---|---|---|---|
菌株 | E.coli JM109 | 敲除载体构建 | 中国科学院 |
E.coli EC135 pM.Bam | 对质粒DNA进行甲基化修饰 | 中国科学院 | |
B.amyloliquefaciens TCCC111018Δupp(BA Δupp) | 出发菌株 | 本研究 | |
B.amyloliquefaciens TCCC111018Δspo0A(BA Δspo0A) | spo0A 基因敲除 | 本研究 | |
B.amyloliquefaciens TCCC111018ΔsigE(BA ΔsigE) | sig E基因敲除 | 本研究 | |
B.amyloliquefaciens TCCC111018ΔsigF(BA ΔsigF) | sigF 基因敲除 | 本研究 | |
质粒 | pWH-T2 | 穿梭表达载体 | 湖北大学 |
pWH-T2-Δspo0A | 敲除载体,spo0A基因敲除 | 本研究 | |
pWH-T2-ΔsigE | 敲除载体,sigE 基因敲除 | 本研究 | |
pWH-T2-ΔsigF | 敲除载体,sigF 基因敲除 | 本研究 | |
pLY-1 | 耐酸性α-淀粉酶表达载体 | 本实验室 | |
pLY-2 | 碱性蛋白酶表达载体 | 本实验室 |
引物名称 | 寡核苷酸序列 |
---|---|
上游同源臂 | F:CCACCGCGGTGGCGGCCGCTCTAGACGATCATCCAGAACGGGAAAG |
R:CCAATCTCAGATCAGCAACACAAACTTTAATTTTCTCCACG | |
下游同源臂 | F:TGTTGCTGATCTGAGATTGGAGCATAAAGCTTCATAACGC |
R:TTAACGAATTCCTGCAGCCCGGGAGAGTGACGATGGATATGATTATG | |
同源臂重叠PCR | F:CCACCGCGGTGGCGGCCGCTCTAGACGATCATCCAGAACGGGAAAG |
R:TTAACGAATTCCTGCAGCCCGGGAGAGTGACGATGGATATGATTATG | |
单交换验证(上游交换) | F:CCGCAAAAATTCCCGGCGAC |
R:AGAGTGACGATGGATATGATTATGGTCAGTTTG | |
单交换验证(下游交换) | F:CGATCATCCAGAACGGGAAAGTCG |
R:CACTCAGTTTAAAGGCGCGTATCGCTTATG | |
双交换验证 | F:CCGCAAAAATTCCCGGCGAC |
R:CACTCAGTTTAAAGGCGCGTATCGCTTATG |
引物名称 | 寡核苷酸序列 |
---|---|
上游同源臂 | F:CCACCGCGGTGGCGGCCGCTCTAGACGATCATCCAGAACGGGAAAG |
R:CCAATCTCAGATCAGCAACACAAACTTTAATTTTCTCCACG | |
下游同源臂 | F:TGTTGCTGATCTGAGATTGGAGCATAAAGCTTCATAACGC |
R:TTAACGAATTCCTGCAGCCCGGGAGAGTGACGATGGATATGATTATG | |
同源臂重叠PCR | F:CCACCGCGGTGGCGGCCGCTCTAGACGATCATCCAGAACGGGAAAG |
R:TTAACGAATTCCTGCAGCCCGGGAGAGTGACGATGGATATGATTATG | |
单交换验证(上游交换) | F:CCGCAAAAATTCCCGGCGAC |
R:AGAGTGACGATGGATATGATTATGGTCAGTTTG | |
单交换验证(下游交换) | F:CGATCATCCAGAACGGGAAAGTCG |
R:CACTCAGTTTAAAGGCGCGTATCGCTTATG | |
双交换验证 | F:CCGCAAAAATTCCCGGCGAC |
R:CACTCAGTTTAAAGGCGCGTATCGCTTATG |
基因名称 | 6 h-fpkm | 10 h-fpkm | 12 h-fpkm | 30 h-fpkm |
---|---|---|---|---|
spo0A | 582.56 | 511.54 | 658.06 | 1517.13 |
sigE | 4.97 | 30.06 | 9.21 | 0.93 |
sigF | 2380.91 | 4785.86 | 3287.31 | 1270.81 |
基因名称 | 6 h-fpkm | 10 h-fpkm | 12 h-fpkm | 30 h-fpkm |
---|---|---|---|---|
spo0A | 582.56 | 511.54 | 658.06 | 1517.13 |
sigE | 4.97 | 30.06 | 9.21 | 0.93 |
sigF | 2380.91 | 4785.86 | 3287.31 | 1270.81 |
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