生物技术通报 ›› 2026, Vol. 42 ›› Issue (8): 298-311.doi: 10.13560/j.cnki.biotech.bull.1985.2025-1200
• 研究报告 • 上一篇
邱宇洁, 王茜, 曾琳, 侯虹吉, 苟玉梅, 邹兰(
), 黄晶(
)
收稿日期:2025-11-06
出版日期:2026-08-26
发布日期:2026-08-17
通讯作者:
邹兰zoulan@swust.edu.cn基金资助:
QIU Yu-jie, WANG Qian, ZENG Lin, HOU Hong-ji, GOU Yu-mei, ZOU Lan(
), HUANG Jing(
)
Received:2025-11-06
Published:2026-08-26
Online:2026-08-17
摘要:
目的 探究枯草芽胞杆菌Bacillus subtilis JY-7-2L对乌头根腐病原菌尖孢镰刀菌(Fusarium oxysporum)的拮抗作用,解析其对大田根腐病的生防潜力,并从基因组层面剖析其抗菌机制。 方法 采用平板对峙试验检测JY-7-2L拮抗病原菌能力,大田试验检测菌株对根腐病的生防潜力和对乌头生长的影响,用Illumina NovaSeq和Oxford Nanopore ONT平台进行全基因组测序,通过COG、CAZy、GO和KEGG数据库对JY-7-2L基因组信息进行基因功能注释,并通过antiSMASH工具预测其次级代谢产物合成基因。 结果 JY-7-2L显著抑制F. oxysporum的生长,并显著降低大田根腐病发病率,生防效率为89.26%-93.77%,同时增加了植株茎、主根和子根的干重。该菌的无细胞发酵滤液和挥发性物质均能显著抑制尖孢镰刀菌的生长。JY-7-2L基因组总长度为4.19 Mb,GC含量43.57%,共编码4 234个基因。JY-7-2L基因组中含有抗生素合成、生物膜形成、抑制病原菌、促进植物生长和诱导植物系统抗性相关基因。AntiSMASH分析表明,该菌株含有11个次级代谢产物合成基因簇,其中6个基因簇能够产生拮抗真菌或细菌的活性物质,3个基因簇具有合成新型活性物质的潜力。 结论 JY-7-2L兼具生防和促生能力,具有开发作为生物肥料和生防材料的潜力。
邱宇洁, 王茜, 曾琳, 侯虹吉, 苟玉梅, 邹兰, 黄晶. 枯草芽胞杆菌JY-7-2L对乌头根腐病的生防能力及其潜在作用机制解析[J]. 生物技术通报, 2026, 42(8): 298-311.
QIU Yu-jie, WANG Qian, ZENG Lin, HOU Hong-ji, GOU Yu-mei, ZOU Lan, HUANG Jing. Biocontrol Efficacy of Bacillus subtilis JY-7-2L against Aconitum carmichaelii Debeaux Root Rot and Its Potential Mechanisms[J]. Biotechnology Bulletin, 2026, 42(8): 298-311.
菌株 Strain | PDA平板抑菌率 Inhibition rate on PDA plate (%) | 乌头切片抑菌率 Inhibition rate on A. carmichaelii root slice (%) | ||||
|---|---|---|---|---|---|---|
| F. oxysporum-1 | F. oxysporum-2 | F. oxysporum-1 | F. oxysporum-2 | |||
| JY-7-2L | 62.75±1.96 | 64.71±2.04 | 48.10±0.73 | 33.00±0.85 | ||
表1 JY-7-2L对F. oxysporum的抑制效果
Table 1 Inhibition effects of JY-7-2L against F. oxysporum
菌株 Strain | PDA平板抑菌率 Inhibition rate on PDA plate (%) | 乌头切片抑菌率 Inhibition rate on A. carmichaelii root slice (%) | ||||
|---|---|---|---|---|---|---|
| F. oxysporum-1 | F. oxysporum-2 | F. oxysporum-1 | F. oxysporum-2 | |||
| JY-7-2L | 62.75±1.96 | 64.71±2.04 | 48.10±0.73 | 33.00±0.85 | ||
图2 JY-7-2L田间防病及促生效果A:JY-7-2L对乌头根腐病的田间防病效果(dpi:接种后天数);B:JY-7-2L对乌头生长的影响。不同小写字母表示差异显著(P<0.05),下同
Fig. 2 Biocontrol and growth-promoting efficacy of strain JY-7-2L under field conditionsA: Biocontrol effect of JY-7-2L against root rot by field experiment (dpi: days post inoculation). B: Growth-promoting effects of JY-7-2L on Aconitum carmichaelii Debx. Different lowercase letters indicate significant difference (P<0.05), the same below
病原菌 Pathogen | 处理 Treatment | 菌落直径 Diameter of fungal colony (cm) | |||||
|---|---|---|---|---|---|---|---|
| 48 h | 72 h | 96 h | 120 h | 144 h | 168 h | ||
| F. oxysporum-1 | CK | 2.13±0.09a | 3.83±0.07a | 5.23±0.07a | 6.90±0.06a | 8.10±0.06a | 8.50±0.00a |
| JY-7-2L | 1.13±0.03b | 2.37±0.07b | 3.37±0.17b | 4.37±0.18b | 6.07±0.32b | 7.20±0.26b | |
| F. oxysporum-2 | CK | 2.08±0.03a | 3.50±0.04a | 4.55±0.03a | 5.85±0.09a | 7.13±0.08a | 8.08±0.06a |
| JY-7-2L | 0.93±0.03b | 1.85±0.03b | 2.48±0.05b | 3.45±0.03b | 4.48±0.09b | 5.50±0.07b | |
表2 JY-7-2L无细胞发酵滤液对F. oxysporum菌丝生长的影响
Table 2 Effects of cell-free culture filtrate of JY-7-2L on the mycelial growth of F. oxysporum
病原菌 Pathogen | 处理 Treatment | 菌落直径 Diameter of fungal colony (cm) | |||||
|---|---|---|---|---|---|---|---|
| 48 h | 72 h | 96 h | 120 h | 144 h | 168 h | ||
| F. oxysporum-1 | CK | 2.13±0.09a | 3.83±0.07a | 5.23±0.07a | 6.90±0.06a | 8.10±0.06a | 8.50±0.00a |
| JY-7-2L | 1.13±0.03b | 2.37±0.07b | 3.37±0.17b | 4.37±0.18b | 6.07±0.32b | 7.20±0.26b | |
| F. oxysporum-2 | CK | 2.08±0.03a | 3.50±0.04a | 4.55±0.03a | 5.85±0.09a | 7.13±0.08a | 8.08±0.06a |
| JY-7-2L | 0.93±0.03b | 1.85±0.03b | 2.48±0.05b | 3.45±0.03b | 4.48±0.09b | 5.50±0.07b | |
病原菌 Pathogen | 处理 Treatment | 菌落直径 Diameter of fungal colony (cm) | ||||||
|---|---|---|---|---|---|---|---|---|
| 48 h | 72 h | 96 h | 120 h | 144 h | 168 h | 192 h | ||
| F. oxysporum-1 | CK | 1.87±0.07a | 3.63±0.24a | 4.83±0.07a | 5.70±0.09a | 6.80±0.13a | 7.90±0.23a | 8.50±0.00a |
| JY-7-2L | 1.83±0.03a | 2.53±0.24a | 3.57±0.33b | 4.43±0.07b | 4.82±0.03b | 5.56±0.09b | 6.89±0.17b | |
| F. oxysporum-2 | CK | 2.55±0.05a | 4.13±0.05a | 5.28±0.10a | 6.38±0.09a | 7.23±0.10a | 8.08±0.25a | 8.50±0.00a |
| JY-7-2L | 2.23±0.09b | 3.53±0.09b | 3.53±0.09b | 4.83±0.12b | 5.55±0.13b | 6.18±0.06b | 6.55±0.06b | |
表3 JY-7-2L挥发性物质对F. oxysporum菌丝生长的影响
Table 3 Effects of volatile organic compounds of JY-7-2L on the mycelial growth of F. oxysporum
病原菌 Pathogen | 处理 Treatment | 菌落直径 Diameter of fungal colony (cm) | ||||||
|---|---|---|---|---|---|---|---|---|
| 48 h | 72 h | 96 h | 120 h | 144 h | 168 h | 192 h | ||
| F. oxysporum-1 | CK | 1.87±0.07a | 3.63±0.24a | 4.83±0.07a | 5.70±0.09a | 6.80±0.13a | 7.90±0.23a | 8.50±0.00a |
| JY-7-2L | 1.83±0.03a | 2.53±0.24a | 3.57±0.33b | 4.43±0.07b | 4.82±0.03b | 5.56±0.09b | 6.89±0.17b | |
| F. oxysporum-2 | CK | 2.55±0.05a | 4.13±0.05a | 5.28±0.10a | 6.38±0.09a | 7.23±0.10a | 8.08±0.25a | 8.50±0.00a |
| JY-7-2L | 2.23±0.09b | 3.53±0.09b | 3.53±0.09b | 4.83±0.12b | 5.55±0.13b | 6.18±0.06b | 6.55±0.06b | |
图5 菌株JY-7-2L的全基因组从内到外依次为:1:基因组的刻度(kb);2:GC偏移(向内的部分为GC偏移值为正值即G > C,向外的部分为GC偏移值为负值即G < C);3:GC含量(向内部分表示该区域GC含量低于全基因组平均GC含量,向外部分与之相反,且峰值越高表示与平均GC含量差值越大);4-7:每一个CDS所属的COG;5-6:CDS、tRNA及rRNA在基因组上的位置
Fig. 5 Whole genome of strain JY-7-2LFrom the innermost to the outermost circle: 1: The genome scale (kb). 2: GC skew (positive values (G > C) are shown as inward deflections; negative values (G < C) as outward deflections). 3: GC content (inward peaks indicate regions with GC content below the genome average, while outward peaks indicate regions with GC content above the genome average. Peak height indicates the magnitude of deviation). 4-7: Each CDS is based on its COG functional category. 5-6: The locations of CDSs, tRNAs, and rRNAs in the genome
图6 JY-7-2L全基因组功能注释A:JY-7-2L基因组的COG功能分类图;B:JY-7-2L基因组的CAZy功能分类图;C:JY-7-2L基因组的GO功能分类图(每个分类的前10条通路);D:JY-7-2L基因组的KEGG功能分类图
Fig. 6 Functional annotation of the whole genome of JY-7-2LA: COG functional classification of the genome of JY-7-2L. B: CAZy functional classification of the genome of JY-7-2L. C: GO functional classification of the genome of JY-7-2L (top 10 pathways in each category). D: KEGG functional classification of the genome of JY-7-2L
基因组富集通路 Genome enrichment pathway | 富集基因数量 Number of enriched genes | 通路编号 Pathway ID |
|---|---|---|
| Novobiocin biosynthesis | 5 | ko00401 |
| Streptomycin biosynthesis | 8 | ko00521 |
| Biosynthesis of ansamycins | 1 | ko01051 |
| Penicillin and cephalosporin biosynthesis | 2 | ko00311 |
| Vancomycin resistance | 7 | ko01502 |
| Biosynthesis of vancomycin group antibiotics | 1 | ko01055 |
| Biosynthesis of various antibiotics | 10 | ko00998 |
| Acarbose and validamycin biosynthesis | 2 | ko00525 |
| Cationic antimicrobial peptide resistance | 12 | ko01503 |
| Carbapenem biosynthesis | 3 | ko00332 |
| Prodigiosin biosynthesis | 5 | ko00333 |
表4 JY-7-2L抗生素相关通路
Table 4 JY-7-2L antibiotic-related pathways
基因组富集通路 Genome enrichment pathway | 富集基因数量 Number of enriched genes | 通路编号 Pathway ID |
|---|---|---|
| Novobiocin biosynthesis | 5 | ko00401 |
| Streptomycin biosynthesis | 8 | ko00521 |
| Biosynthesis of ansamycins | 1 | ko01051 |
| Penicillin and cephalosporin biosynthesis | 2 | ko00311 |
| Vancomycin resistance | 7 | ko01502 |
| Biosynthesis of vancomycin group antibiotics | 1 | ko01055 |
| Biosynthesis of various antibiotics | 10 | ko00998 |
| Acarbose and validamycin biosynthesis | 2 | ko00525 |
| Cationic antimicrobial peptide resistance | 12 | ko01503 |
| Carbapenem biosynthesis | 3 | ko00332 |
| Prodigiosin biosynthesis | 5 | ko00333 |
类别 Category | JY-7-2L相关基因 Gene identified in JY-7-2L | 功能 Function |
|---|---|---|
生物膜形成 Biofilm formation | abrB、ydaM、kinC、ymfC、pgsA、yoaW、spo0A、sinI、sinR、tasA、sipW、tapA、bslA、iolU、mstX、epsO、epsN、epsM、epsL、epsK、epsJ、epsI、epsH、epsG、epsF、epsE、epsD、epsC、slrR、degU、bslB、slrA、yxjH、yxjG、yxaB | 定殖、生长[ Colonization and growth |
抑菌活性物质 Antifungal active substances | srfAA、srfAB、srfAC、srfAD、pksA、pksB、pksC、pksD、pksE、pksF、pksG、pksH、pksI、pksJ、pksL、pksM、pksN、pksR、pksS、ppsE、ppsD、ppsC、ppsB、ppsA、sboA、albA、albC、albD、albE、albF、albG、bacG、bacF、bacE、bacD、bacC、bacB、bacA、dhbA、dhbB、dhbC、dhbE、dhbF、yvmC、fadA、ykvQ、sleL、yvbX、ydhD、cwlQ、xkdO、yocA、yomI | 破坏真菌细胞膜、细胞壁,抑制蛋白质合成,使真菌胞内活性氧累积,干扰能量代谢,诱导细胞凋亡[ Damage fungal cell membranes and cell walls, inhibit protein synthesis, induce intracellular reactive oxygen species accumulation, disrupt energy metabolism, and induce cell apoptosis |
促生 Plant growth promotion | ysnE、ywkB、feuC、feuB、feuA、yhfQ、fhuC、fhuG、fhuB、fhuD、btr、dhbF、dhbB、dhbC、dhbA、dhbE | 促进植物细胞伸长与分裂,促进铁元素吸收和植物生长[ Promote plant cell elongation and division, enhance iron uptake, and stimulate plant growth |
诱导系统抗性 Induce systemic resistance | srfAA、srfAB、srfAC、srfAD、bdhA、ppsE、ppsD、ppsC、ppsB、ppsA、alsD、alsS、alsR | 广谱抗菌性[ Broad-spectrum antifungal activity |
表5 JY-7-2L功能基因
Table 5 Function genes of JY-7-2L
类别 Category | JY-7-2L相关基因 Gene identified in JY-7-2L | 功能 Function |
|---|---|---|
生物膜形成 Biofilm formation | abrB、ydaM、kinC、ymfC、pgsA、yoaW、spo0A、sinI、sinR、tasA、sipW、tapA、bslA、iolU、mstX、epsO、epsN、epsM、epsL、epsK、epsJ、epsI、epsH、epsG、epsF、epsE、epsD、epsC、slrR、degU、bslB、slrA、yxjH、yxjG、yxaB | 定殖、生长[ Colonization and growth |
抑菌活性物质 Antifungal active substances | srfAA、srfAB、srfAC、srfAD、pksA、pksB、pksC、pksD、pksE、pksF、pksG、pksH、pksI、pksJ、pksL、pksM、pksN、pksR、pksS、ppsE、ppsD、ppsC、ppsB、ppsA、sboA、albA、albC、albD、albE、albF、albG、bacG、bacF、bacE、bacD、bacC、bacB、bacA、dhbA、dhbB、dhbC、dhbE、dhbF、yvmC、fadA、ykvQ、sleL、yvbX、ydhD、cwlQ、xkdO、yocA、yomI | 破坏真菌细胞膜、细胞壁,抑制蛋白质合成,使真菌胞内活性氧累积,干扰能量代谢,诱导细胞凋亡[ Damage fungal cell membranes and cell walls, inhibit protein synthesis, induce intracellular reactive oxygen species accumulation, disrupt energy metabolism, and induce cell apoptosis |
促生 Plant growth promotion | ysnE、ywkB、feuC、feuB、feuA、yhfQ、fhuC、fhuG、fhuB、fhuD、btr、dhbF、dhbB、dhbC、dhbA、dhbE | 促进植物细胞伸长与分裂,促进铁元素吸收和植物生长[ Promote plant cell elongation and division, enhance iron uptake, and stimulate plant growth |
诱导系统抗性 Induce systemic resistance | srfAA、srfAB、srfAC、srfAD、bdhA、ppsE、ppsD、ppsC、ppsB、ppsA、alsD、alsS、alsR | 广谱抗菌性[ Broad-spectrum antifungal activity |
编号 Cluster ID | 位置 Location (bp) | 类型 Cluster type | 相似基因簇 Similar cluster | 相似度 Similarity | 抑制作用 Suppress object | 来源 Resource |
|---|---|---|---|---|---|---|
| Cluster 1 | 358 578-423 969 | NRPS | Surfactin | 82% | Bacteria and fungi | B. velezensis FZB42 |
| Cluster 2 | 1 111 085-1 131 888 | Terpene | — | — | — | — |
| Cluster 3 | 1 539 083-1 606 810 | NRPS | Paenilarvin A/B/C | 50% | Fungi | Paenibacillus larvae subsp. larvae DSM 25430 |
| Cluster 4 | 1 751 995-1 866 766 | transAT-PKS, PKS-like, T3PKS, NRPS | Bacillaene | 100% | Bacteria | B. velezensis FZB42 |
| Cluster 5 | 1 928 059-2 005 809 | NRPS, betalactone | Fengycin | 100% | Fungi | B. velezensis FZB42 |
| Cluster 6 | 2 067 440-2 089 338 | terpene | — | — | — | |
| Cluster 7 | 2 271 506-2 312 603 | T3PKS | 1-Carbapen-2-em-3-carboxylic acid | 16% | Bacteria | Pectobacterium carotovorum |
| Cluster 8 | 3 209 497-3 261 274 | NRP-metallophore, NRPS | bacillibactin | 100% | Bacteria and fungi | B. subtilis subsp. subtilis str. 168 |
| Cluster 9 | 3 545 060-3 565 806 | CDPS | pulcherriminic acid | 100% | Bacteria and fungi | B. subtilis subsp. subtilis str. 168 |
| Cluster 10 | 3 792 717-3 814 328 | Sactipeptide | subtilosin A | 100% | Bacteria | B. subtilis subsp. spizizenii ATCC 6633 |
| Cluster 11 | 3 821 105-3 862 523 | Other | bacilysin | 100% | Bacteria and fungi | B. velezensis FZB42 |
表6 JY-7-2L次生代谢产物合成基因簇
Table 6 Secondary metabolite gene clusters of JY-7-2L
编号 Cluster ID | 位置 Location (bp) | 类型 Cluster type | 相似基因簇 Similar cluster | 相似度 Similarity | 抑制作用 Suppress object | 来源 Resource |
|---|---|---|---|---|---|---|
| Cluster 1 | 358 578-423 969 | NRPS | Surfactin | 82% | Bacteria and fungi | B. velezensis FZB42 |
| Cluster 2 | 1 111 085-1 131 888 | Terpene | — | — | — | — |
| Cluster 3 | 1 539 083-1 606 810 | NRPS | Paenilarvin A/B/C | 50% | Fungi | Paenibacillus larvae subsp. larvae DSM 25430 |
| Cluster 4 | 1 751 995-1 866 766 | transAT-PKS, PKS-like, T3PKS, NRPS | Bacillaene | 100% | Bacteria | B. velezensis FZB42 |
| Cluster 5 | 1 928 059-2 005 809 | NRPS, betalactone | Fengycin | 100% | Fungi | B. velezensis FZB42 |
| Cluster 6 | 2 067 440-2 089 338 | terpene | — | — | — | |
| Cluster 7 | 2 271 506-2 312 603 | T3PKS | 1-Carbapen-2-em-3-carboxylic acid | 16% | Bacteria | Pectobacterium carotovorum |
| Cluster 8 | 3 209 497-3 261 274 | NRP-metallophore, NRPS | bacillibactin | 100% | Bacteria and fungi | B. subtilis subsp. subtilis str. 168 |
| Cluster 9 | 3 545 060-3 565 806 | CDPS | pulcherriminic acid | 100% | Bacteria and fungi | B. subtilis subsp. subtilis str. 168 |
| Cluster 10 | 3 792 717-3 814 328 | Sactipeptide | subtilosin A | 100% | Bacteria | B. subtilis subsp. spizizenii ATCC 6633 |
| Cluster 11 | 3 821 105-3 862 523 | Other | bacilysin | 100% | Bacteria and fungi | B. velezensis FZB42 |
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