生物技术通报 ›› 2019, Vol. 35 ›› Issue (5): 146-156.doi: 10.13560/j.cnki.biotech.bull.1985.2018-1062
郭彦秀1, 陈静1,2, 王艳芳1,3, 孙春玉1,2, 王义1,2, 张美萍1,2
收稿日期:
2018-12-13
出版日期:
2019-05-26
发布日期:
2019-05-23
作者简介:
郭彦秀,女,硕士研究生,研究方向:遗传学;E-mail:923008037@qq.com
基金资助:
GUO Yan-xiu1, CHEN Jing1,2, WANG Yan-fang1,3, SUN Chun-yu1,2, WANG Yi1,2, ZHANG Mei-ping1,2
Received:
2018-12-13
Published:
2019-05-26
Online:
2019-05-23
摘要: DNA binding with one finger(Dof)蛋白是植物中特有的一类转录因子,自1993年在玉米中发现该转录因子到如今已有26年的历史。Dof蛋白只有一个由52个氨基酸组成的单锌指保守结构域,该结构域包含4个保守的半胱氨酸残基和一个二价锌离子,这两者都是Dof转录因子重要的组成部分,二者缺一不可,若半胱氨酸发生突变,或存在其他二价离子螯合剂都将会影响锌指结构的生成,进而使Dof蛋白不能与DNA结合,导致其丧失活性。半胱氨酸残基和Zn2+可以共价结合构成CX2CX21CX2C基序,此基序能够特异识别启动子中的AAAG(或CTTT)序列,从而激活或抑制靶基因的表达。Dof蛋白C-末端氨基酸序列的多变性导致该转录因子进化的多样性,从而在植物的生长发育过程中发挥着不同且重要的功能,如种子萌发、维管的发育和叶片极性、花和花粉发育、光周期反应、参与碳和氮的代谢、合成次生代谢产物、植物的逆境响应过程等。围绕着Dof转录因子的结构、系统进化关系、motif的组成和在植物中发挥的功能展开综述,以期为后续Dof转录因子的研究奠定相应的理论基础。
郭彦秀, 陈静, 王艳芳, 孙春玉, 王义, 张美萍. Dof转录因子在植物中的调控作用[J]. 生物技术通报, 2019, 35(5): 146-156.
GUO Yan-xiu, CHEN Jing, WANG Yan-fang, SUN Chun-yu, WANG Yi, ZHANG Mei-ping. Roles of Dof Transcription Factors in the Regulation of Plant[J]. Biotechnology Bulletin, 2019, 35(5): 146-156.
[1] Gupta S, Malviya N, Kushwaha H, et al.Insights into structural and functional diversity of Dof(DNA binding with one finger)transcription factor[J]. Planta, 2015, 241(3):549-562. [2] Yanagisawa S, Izui K.Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif[J]. J Biol Chem, 1993, 268(21):16028-16036. [3] Shigyo M, Tabei N, Yoneyama T, et al.Evolutionary processes during the formation of the plant-specific Dof transcription factor family[J]. Plant Cell Physiol, 2007, 48(1):179-185. [4] Moreno-Risueno MÁ, Martínez M, Vicente-Carbajosa J, et al.The family of DOF transcription factors:from green unicellular algae to vascular plants[J]. Mol Genet Genomics, 2007, 277(4):379-390. [5] Lijavetzky D, Carbonero P, Vicente-Carbajosa J.Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families[J]. BMC Evolutionary Biology, 2003, 3(1):17. [6] Hernando-Amado S, González-Calle V, Carbonero P, et al.The family of DOF transcription factors in Brachypodium distachyon:phylogenetic comparison with rice and barley DOFs and expression profiling[J]. BMC Blant Biology, 2012, 12(1):202. [7] Jiang Y, Zeng B, Zhao H, et al.Genome-wide transcription factor gene prediction and their expressional tissue-specificities in maize F[J]. Journal of Integrative Plant Biology, 2012, 54(9):616-630. [8] Shaw LM, Mcintyre CL, Gresshoff PM, et al.Members of the Dof transcription factor family in Triticum aestivum are associated with light-mediated gene regulation[J]. Functional & Integrative Genomics, 2009, 9(4):485-498. [9] Moreno-Risueno MÁ, Díaz I, Carrillo L, et al.The HvDOF19 transcription factor mediates the abscisic acid-dependent repression of hydrolase genes in germinating barley aleurone[J]. The Plant Journal, 2007, 51(3):352-365. [10] Guo Y, Qiu LJ.Genome-wide analysis of the Dof transcription factor gene family reveals soybean-specific duplicable and functional characteristics[J]. PLoS One, 2013, 8(9):e76809. [11] Kushwaha H, Gupta S, Singh VK, et al.Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis[J]. Molecular Biology Reports, 2011, 38(8):5037-5053. [12] Venkatesh J, Park SW.Genome-wide analysis and expression profiling of DNA-binding with one zinc finger(Dof)transcription factor family in potato[J]. Plant Physiology and Biochemistry, 2015, 94:73-85. [13] Huang W, Huang Y, Li M, et al.Dof transcription factors in carrot:genome-wide analysis and their response to abiotic stress[J]. Biotechnology Letters, 2016, 38(1):145-155. [14] Cai X, Zhang Y, Zhang C, et al.Genome-wide analysis of plant-specific Dof transcription factor family in tomato[J]. Journal of Integrative Plant Biology, 2013, 55(6):552-566. [15] Wen C, Cheng Q, Zhao L, et al.Identification and characterisation of Dof transcription factors in the cucumber genome[J]. Scientific Reports, 2016, 6:23072. [16] Wu Z, Cheng J, Cui J, et al.Genome-wide identification and expression profile of dof transcription factor gene family in pepper(Capsicum annuum L.)[J]. Frontiers in Plant Science, 2016, 7:574. [17] Ma J, Li MY, Wang F, et al.Genome-wide analysis of Dof family transcription factors and their responses to abiotic stresses in Chinese cabbage[J]. BMC Genomics, 2015, 16(1):33. [18] Gupta S, Kushwaha H, Singh VK, et al.Genome wide in silico characterization of Dof transcription factor gene family of sugarcane and its comparative phylogenetic analysis with Arabidopsis, rice and sorghum[J]. Sugar Tech, 2014, 16(4):372-384. [19] Malviya N, Gupta S, Singh VK, et al.Genome wide in silico characterization of Dof gene families of pigeonpea(Cajanus cajan(L)Millsp. )[J]. Molecular Biology Reports, 2015, 42(2):535-552. [20] Yang X, Tuskan GA.Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication[J]. Plant Physiol, 2006, 142(3):820-830. [21] Li H, Huang W, Liu ZW, et al. Transcriptome-based analysis of Dof family transcription factors and their responses to abiotic stress in tea plant(Camellia sinensis)[J]. International Journal of Genomics, 2016. ID:5614142. [22] Song A, Gao T, Li P, et al.Transcriptome-wide identification and expression profiling of the DOF transcription factor gene family in Chrysanthemum morifolium[J]. Frontiers in Plant Science, 2016, 7:199. [23] Zhang Z, Yuan L, Liu X, et al.Evolution analysis of Dof transcription factor family and their expression in response to multiple abiotic stresses in Malus domestica[J]. Gene, 2018, 639:137-148. [24] Diaz I, Vicente-Carbajosa J, Abraham Z, et al.The GAMYB protein from barley interacts with the DOF transcription factor BPBF and activates endosperm-specific genes during seed development[J]. The Plant Journal, 2002, 29(4):453-464. [25] Yanagisawa S.Dof domain proteins:plant-specific transcription factors associated with diverse phenomena unique to plants[J]. Plant Cell Physiol, 2004, 45(4):386-391. [26] Umemura Y, Ishiduka T, Yamamoto R, et al.The Dof domain, a zinc finger DNA-binding domain conserved only in higher plants, truly functions as a Cys2/Cys2 Zn finger domain[J]. The Plant Journal, 2004, 37(5):741-749. [27] Cominelli E, Galbiati M, Albertini A, et al.DOF-binding sites additively contribute to guard cell-specificity of AtMYB60 promoter[J]. BMC Plant Biology, 2011, 11(1):162. [28] Yang J, Yang MF, Zhang WP, et al.A putative flowering-time-related Dof transcription factor gene, JcDof3, is controlled by the circadian clock in Jatropha curcas[J]. Plant Science, 2011, 181(6):667-674. [29] Chen X, Wang D, Liu C, et al.Maize transcription factor Zmdof1 involves in the regulation of Zm401 gene[J]. Plant Growth Regulation, 2012, 66(3):271-284. [30] Kisu Y, Ono T, Shimofurutani N, et al.Characterization and expression of a new class of zinc finger protein that binds to silencer region of ascorbate oxidase gene[J]. Plant Cell Physiol, 1998, 39(10):1054-1064. [31] Zhang B, Chen W, Foley RC, et al.Interactions between distinct types of DNA binding proteins enhance binding to ocs element promoter sequences[J]. The Plant Cell, 1995, 7(12):2241-2252. [32] Vicente-Carbajosa J, Moose SP, Parsons RL, et al.A maize zinc-finger protein binds the prolamin box in zein gene promoters and interacts with the basic leucine zipper transcriptional activator Opaque2[J]. Proceedings of the National Academy of Sciences, 1997, 94(14):7685-7690. [33] Yanagisawa S.The transcriptional activation domain of the plant-specific Dof1 factor functions in plant, animal, and yeast cells[J]. Plant and Cell Physiol, 2001, 42(8):813-822. [34] Yanagisawa S.The Dof family of plant transcription factors[J]. Trends in Plant Science, 2002, 7(12):555-560. [35] Papi M, Sabatini S, Bouchez D, et al.Identification and disruption of an Arabidopsis zinc finger gene controlling seed germination[J]. Genes & Development, 2000, 14(1):28-33. [36] Gabriele S, Rizza A, Martone J, et al.The Dof protein DAG1 mediates PIL5 activity on seed germination by negatively regulating GA biosynthetic gene AtGA3ox1[J]. The Plant Journal, 2010, 61(2):312-323. [37] Gualberti G, Papi M, Bellucci L, et al.Mutations in the Dof zinc finger genes DAG2 and DAG1 influence with opposite effects the germination of Arabidopsis seeds[J]. The Plant Cell, 2002, 14(6):1253-1263. [38] Rizza A, Boccaccini A, Lopez-Vidriero I, et al.Inactivation of the ELIP1 and ELIP2 genes affects Arabidopsis seed germination[J]. New Phytologist, 2011, 190(4):896-905. [39] Noguero M, Atif RM, Ochatt S, et al.The role of the DNA-binding One Zinc Finger(DOF)transcription factor family in plants[J]. Plant Science, 2013, 209:32-45. [40] Isabel-LaMoneda I, Diaz I, Martinez M, et al. SAD:a new DOF protein from barley that activates transcription of a cathepsin B-like thiol protease gene in the aleurone of germinating seeds[J]. The Plant Journal, 2003, 33(2):329-340. [41] Zou X, Neuman D, Shen QJ.Interactions of two transcriptional repressors and two transcriptional activators in modulating gibberellin signaling in aleurone cells[J]. Plant Physiol, 2008, 148(1):176-186. [42] Rueda-Romero P, Barrero-Sicilia C, Gómez-Cadenas A, et al.Arabidopsis thaliana DOF6 negatively affects germination in non-after-ripened seeds and interacts with TCP14[J]. J Exp Bot, 2011, 63(5):1937-1949. [43] Washio K.Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains[J]. Biochimica et Biophysica Acta(BBA)-Gene Structure and Expression, 2001, 1520(1):54-62. [44] Zhang Y.Functional analysis of Dof transcription factors controlling heading date and PPDK gene expression in rice[M]. Institute of Biology(IBL), Faculty of Science, Leiden University, 2015. [45] Mena M, Vicentecarbajosa J, Schmidt RJ, et al.An endosperm-specific DOF protein from barley, highly conserved in wheat, binds to and activates transcription from the prolamin-box of a native B-hordein promoter in barley endosperm[J]. Plant J, 2010, 16(1):53-62. [46] Dong G, Ni Z, Yao Y, et al.Wheat Dof transcription factor WPBF interacts with TaQM and activates transcription of an alpha-gliadin gene during wheat seed development[J]. Plant Mol Biol, 2007, 63(1):73-84. [47] Marzábal P, Gas E, Fontanet P, et al.The maize Dof protein PBF activates transcription of gamma-zein during maize seed development[J]. Plant Mol Biol, 2008, 67(5):441-454. [48] Kawakatsu T, Takaiwa F.Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain[J]. Plant & Cell Physiology, 2010, 51(12):1964-1974. [49] Skirycz A, Jozefczuk S, Stobiecki M, et al.Transcription factor AtDOF4;2 affects phenylpropanoid metabolism in Arabidopsis thaliana[J]. New Phytologist, 2010, 175(3):425-438. [50] Kim HS, Kim SJ, Abbasi N, et al.The DOF transcription factor Dof5. 1 influences leaf axial patterning by promoting revoluta, transcription in Arabidopsis[J]. Plant J, 2010, 64(3):524-535. [51] Konishi M, Yanagisawa S.Sequential activation of two Dof transcription factor gene promoters during vascular development in Arabidopsis thaliana[J]. Plant Physiology and Biochemistry, 2007, 45(8):623-629. [52] Chen X, Wang D, Liu C, et al.Maize transcription factor Zmdof1 involves in the regulation of Zm401 gene[J]. Plant Growth Regulation, 2012, 66(3):271-284. [53] De Paolis A, Sabatini S, De Pascalis L, et al.A rolB regulatory factor belongs to a new class of single zinc finger plant proteins[J]. The Plant Journal, 1996, 10(2):215-223. [54] Baumann K, De Paolis A, Costantino P, et al.The DNA binding site of the Dof protein NtBBF1 is essential for tissue-specific and auxin-regulated expression of the rolB oncogene in plants[J]. The Plant Cell, 1999, 11(3):323-333. [55] Yu J, Shi G, Yu D.Constitutive overexpression of GmDof17-1, a putative DOF transcription factor from soybean causing growth inhibition in tobacco[J]. Scientia Agricola, 2014, 71(1):44-51. [56] Fatima T, Snyder CL, Schroeder WR, et al.Fatty acid composition of developing sea buckthorn(Hippophae rhamnoides L.)berry and the transcriptome of the mature seed[J]. PLoS One, 2012, 7(4):e34099. [57] Negi J, Moriwaki K, Konishi M, et al.A Dof transcription factor, SCAP1, is essential for the development of functional stomata in Arabidopsis[J]. Current Biology, 2013, 23(6):479-484. [58] Skirycz A, Radziejwoski A, Busch W, et al.The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana[J]. The Plant Journal, 2008, 56(5):779-792. [59] Song YH, Smith RW, To BJ, et al.FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering[J]. Science, 2012, 336(6084):1045-1049. [60] Corrales AR, Nebauer SG, Carrillo L, et al.Characterization of tomato Cycling Dof Factors reveals conserved and new functions in the control of flowering time and abiotic stress responses[J]. Journal of Experimental Botany, 2014, 65(4):995-1012. [61] Ahmad M, Rim Y, Chen H, et al.Functional characterization of Arabidopsis Dof transcription factor AtDof4. 1[J]. Russian Journal of Plant Physiology, 2013, 60(1):116-123. [62] Wei PC, Feng T, Gao XQ, et al.Overexpression of AtDOF4. 7, an Arabidopsis DOF family transcription factor, induces floral organ abscission deficiency in Arabidopsis[J]. Plant Physiol, 2010, 153(3):1031-1045. [63] Li D, Yang C, Li X, et al.Functional characterization of rice OsDof12[J]. Planta, 2009, 229(6):1159-1169. [64] Yanagisawa S.Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize[J]. The Plant Journal, 2000, 21(3):281-288. [65] Cavalar M, Phlippen Y, Kreuzaler F, et al.A drastic reduction in DOF1 transcript levels does not affect C4-specific gene expression in maize[J]. J Plant Physiol, 2007, 164(12):1665-1674. [66] Wang W, Tong Y, Li M, et al.Transcriptome analysis identifies a zinc finger protein regulating starch degradation in kiwifruit[J]. Plant Physiol, 2018, 178(2):850-863. [67] Tanaka M, Takahata Y, Nakayama H, et al.Altered carbohydrate metabolism in the storage roots of sweetpotato plants overexpressing the SRF1 gene, which encodes a Dof zinc finger transcription factor[J]. Planta, 2009, 230(4):737-746. [68] Kurai T, Wakayama M, Abiko T, et al.Introduction of the ZmDof1 gene into rice enhances carbon and nitrogen assimilation under low-nitrogen conditions[J]. Plant Biotechnology Journal, 2011, 9(8):826-837. [69] Santos LA, de Souza SR, Fernandes MS. OsDof25 expression alters carbon and nitrogen metabolism in Arabidopsis under high N-supply[J]. Plant Biotechnol Rep, 2012, 6(4):327-337. [70] Tian AG, Wang J, Cui P, et al.Characterization of soybean genomic features by analysis of its expressed sequence tags[J]. Theoretical and Applied Genetics, 2004, 108(5):903-913. [71] 王志坤, Arun Sebastian, 常健敏, 等. 转GmDof11基因高油转基因大豆的鉴定及主要农艺性状调查[J]. 作物杂志, 2014(2):39-42. [72] Wang HW, Zhang B, Hao YJ, et al.The soybean Dof-type transcription factor genes, GmDof4 and GmDof11, enhance lipid content in the seeds of transgenic Arabidopsis plants[J]. Plant J, 2010, 52(4):716-729. [73] Zhang J, Hao Q, Bai L, et al.Overexpression of the soybean transcription factor GmDof4 significantly enhances the lipid content of Chlorella ellipsoidea[J]. Biotechnol Biofuels, 2014, 7(1):128. [74] Deng W, Yan F, Zhang X, et al.Transcriptional profiling of canola developing embryo and identification of the important roles of BnDof5. 6 in embryo development and fatty acids synthesis[J]. Plant Cell Physiol, 2015, 56(8):1624-1640. |
[1] | 周嫒婷, 彭睿琦, 王芳, 伍建榕, 马焕成. 生防菌株DZY6715在不同生长期的代谢差异分析[J]. 生物技术通报, 2023, 39(9): 225-235. |
[2] | 韩浩章, 张丽华, 李素华, 赵荣, 王芳, 王晓立. 盐碱胁迫诱导的猴樟酵母cDNA文库构建及CbP5CS上游调控因子筛选[J]. 生物技术通报, 2023, 39(9): 236-245. |
[3] | 薛宁, 王瑾, 李世新, 刘叶, 程海娇, 张玥, 毛雨丰, 王猛. 多基因同步调控结合高通量筛选构建高产L-苯丙氨酸的谷氨酸棒杆菌工程菌株[J]. 生物技术通报, 2023, 39(9): 268-280. |
[4] | 程亚楠, 张文聪, 周圆, 孙雪, 李玉, 李庆刚. 乳酸乳球菌生产2'-岩藻糖基乳糖的途径构建及发酵培养基优化[J]. 生物技术通报, 2023, 39(9): 84-96. |
[5] | 沙珊珊, 董世荣, 杨玉菊. 肠道菌群及代谢物调控宿主肠道免疫的研究进展[J]. 生物技术通报, 2023, 39(8): 126-136. |
[6] | 赵思佳, 王晓璐, 孙纪录, 田健, 张杰. 代谢工程改造毕赤酵母生产赤藓糖醇[J]. 生物技术通报, 2023, 39(8): 137-147. |
[7] | 李博, 刘合霞, 陈宇玲, 周兴文, 朱宇林. 金花茶CnbHLH79转录因子的克隆、亚细胞定位及表达分析[J]. 生物技术通报, 2023, 39(8): 241-250. |
[8] | 叶云芳, 田清尹, 施婷婷, 王亮, 岳远征, 杨秀莲, 王良桂. 植物中β-紫罗兰酮生物合成及调控研究进展[J]. 生物技术通报, 2023, 39(8): 91-105. |
[9] | 谢田朋, 张佳宁, 董永骏, 张建, 景明. 早期抽薹对当归根际土壤微环境的影响[J]. 生物技术通报, 2023, 39(7): 206-218. |
[10] | 李英, 岳祥华. DNA甲基化在解析毛竹自然变异中的应用[J]. 生物技术通报, 2023, 39(7): 48-55. |
[11] | 李雨真, 梅天秀, 李治文, 王淇, 李俊, 邹岳, 赵心清. 红酵母基因组和代谢工程改造研究进展[J]. 生物技术通报, 2023, 39(7): 67-79. |
[12] | 成婷, 苑帅, 张晓元, 林良才, 李欣, 张翠英. 酿酒酵母异丁醇合成途径调控的研究进展[J]. 生物技术通报, 2023, 39(7): 80-90. |
[13] | 韩华蕊, 杨宇琭, 门艺涵, 韩尚玲, 韩渊怀, 霍轶琼, 侯思宇. 基于代谢组学研究谷子SiYABBYs参与花发育过程中鼠李糖苷的生物合成[J]. 生物技术通报, 2023, 39(6): 189-198. |
[14] | 潘虎, 周子琼, 田云. 三株异菌脲高效降解菌株的筛选、鉴定及其降解特性分析[J]. 生物技术通报, 2023, 39(6): 298-307. |
[15] | 史建磊, 宰文珊, 苏世闻, 付存念, 熊自立. 番茄青枯病抗性相关miRNA的鉴定与表达分析[J]. 生物技术通报, 2023, 39(5): 233-242. |
阅读次数 | ||||||
全文 |
|
|||||
摘要 |
|
|||||