Biotechnology Bulletin ›› 2023, Vol. 39 ›› Issue (6): 189-198.doi: 10.13560/j.cnki.biotech.bull.1985.2022-1463
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HAN Hua-rui1(), YANG Yu-lu1, MEN Yi-han1, HAN Shang-ling1, HAN Yuan-huai1,2,3, HUO Yi-qiong1,2(), HOU Si-yu1,2,3()
Received:
2022-11-29
Online:
2023-06-26
Published:
2023-07-07
Contact:
HUO Yi-qiong, HOU Si-yu
E-mail:2594488988@qq.com;yiqionghuo2013@126.com;bragren123@163.com
HAN Hua-rui, YANG Yu-lu, MEN Yi-han, HAN Shang-ling, HAN Yuan-huai, HUO Yi-qiong, HOU Si-yu. SiYABBYs Involved in Rhamnoside Biosynthesis During the Flower Development of Setaria italica, Based on Metabolomics[J]. Biotechnology Bulletin, 2023, 39(6): 189-198.
Fig. 1 Expression profile of SiYABBYs A: Tissue expression profile of SiYABBY gene in different tissues and different periods of xiaomi. B: The result of RT-qPCR
亚族 Subfamily | 在拟南芥中的功能 Function in Arabidopsis thaliana | 在水稻中的功能 Function in rice | 谷子中功能预测 Function prediction in foxtail millet |
---|---|---|---|
YAB3 | AtFIL:调控花序和花分生组织的形成和发育 ATFIL: Regulates the formation and development of inflorescence and floral meristems | OsYABBY3:侧生器官的形成和分生组织的分化 OsYABBY3: Formation of lateral organs and differentiation of meristems | SiYABBY1/SiYABBY5/SiYABBY7:参与侧生器官的发育以及花器官和小穗的形成和发育 SiYABBY1/SiYABBY5/SiYABBY7: Participate in lateral organ development and the formation and development of flower organs and spikelet |
AtYAB3:参与营养组织的发育 AtYAB3: Participate in the development of nutritive tissues | OsYABBY4:调控维管组织的发育和叶片的极性 OsYABBY4: Regulates vascular tissue development and leaf polarity | ||
OsYABBY5:小穗发育 OsYABBY5: Spikelets development | |||
INO | AtINO:调节外胚珠珠被的发育 AtINO: To regulate the development of the outer ovules | OsYABBY7 | SiYABBY3:调节外胚珠和花器官的发育 SiYABBY3: Adjust the ovule and floral organ development |
CRC | AtCRC:心皮发育的关键调节因子 AtCRC: Carpel development a key regulating factor | OsDL:调控心皮的形成 OsDL: Regulate the formation of carpels | SiYABBY8(SiDL):导致开花延迟、叶片卷曲和种子变小以及参与心皮的形成 SiYABBY8(SiDL): Cause delayed flowering, smaller hairy leaves and seeds, and participate in the formation of carpel |
YAB2 | AtYAB2:参与营养组织的发育 AtYAB2: Participate in the development of nutritive tissues | OsYABBY1:雄蕊和心皮的分生组织发育 OsYABBY1: Meristematic development of stamens and carpels | SiYABBY2/SiYABBY4/SiYABBY6:参与营养组织的发育和花器官的形成 SiYABBY2/SiYABBY4/SiYABBY6: Involved in the development of vegetative tissues and the formation of floral organs |
OsYABBY2 | |||
OsYABBY6:调控水稻的株高和产量 OsYABBY6: Regulate the plant height and yield of rice |
Table 1 Functional prediction of SiYABBYs in foxtail millet
亚族 Subfamily | 在拟南芥中的功能 Function in Arabidopsis thaliana | 在水稻中的功能 Function in rice | 谷子中功能预测 Function prediction in foxtail millet |
---|---|---|---|
YAB3 | AtFIL:调控花序和花分生组织的形成和发育 ATFIL: Regulates the formation and development of inflorescence and floral meristems | OsYABBY3:侧生器官的形成和分生组织的分化 OsYABBY3: Formation of lateral organs and differentiation of meristems | SiYABBY1/SiYABBY5/SiYABBY7:参与侧生器官的发育以及花器官和小穗的形成和发育 SiYABBY1/SiYABBY5/SiYABBY7: Participate in lateral organ development and the formation and development of flower organs and spikelet |
AtYAB3:参与营养组织的发育 AtYAB3: Participate in the development of nutritive tissues | OsYABBY4:调控维管组织的发育和叶片的极性 OsYABBY4: Regulates vascular tissue development and leaf polarity | ||
OsYABBY5:小穗发育 OsYABBY5: Spikelets development | |||
INO | AtINO:调节外胚珠珠被的发育 AtINO: To regulate the development of the outer ovules | OsYABBY7 | SiYABBY3:调节外胚珠和花器官的发育 SiYABBY3: Adjust the ovule and floral organ development |
CRC | AtCRC:心皮发育的关键调节因子 AtCRC: Carpel development a key regulating factor | OsDL:调控心皮的形成 OsDL: Regulate the formation of carpels | SiYABBY8(SiDL):导致开花延迟、叶片卷曲和种子变小以及参与心皮的形成 SiYABBY8(SiDL): Cause delayed flowering, smaller hairy leaves and seeds, and participate in the formation of carpel |
YAB2 | AtYAB2:参与营养组织的发育 AtYAB2: Participate in the development of nutritive tissues | OsYABBY1:雄蕊和心皮的分生组织发育 OsYABBY1: Meristematic development of stamens and carpels | SiYABBY2/SiYABBY4/SiYABBY6:参与营养组织的发育和花器官的形成 SiYABBY2/SiYABBY4/SiYABBY6: Involved in the development of vegetative tissues and the formation of floral organs |
OsYABBY2 | |||
OsYABBY6:调控水稻的株高和产量 OsYABBY6: Regulate the plant height and yield of rice |
Fig. 2 Differential metabolites analysis in different xiaomi samples A: Differences metabolites classification. B: Differential metabolite enrichment analysis. C: Correlation analysis of phenylpropane and polyketones in differential metabolites with SiYABBY
转录因子 Transcription factor | 结合基序 Motif ID | 靶基因 Target gene | 模板链 Strand | 起始位置 Start | 终止为止 End | P值 P-value | q值 q-value | 匹配序列 Matched sequence |
---|---|---|---|---|---|---|---|---|
SiYABBY8 | UN0396.1 | Si1g24720 | - | 1 734 | 1 741 | 2.65e-05 | 1 | TAATCATA |
Si1g07250 | + | 698 | 705 | 5.3e-05 | 1 | TTATCATA | ||
Si1g24750 | + | 1 165 | 1 172 | 7.95e-05 | 1 | TAATCATA | ||
Si7g05130 | + | 1 478 | 1 485 | 7.95e-05 | 1 | TAATCATT | ||
SiYABBY1 SiYABBY5 SiYABBY7 | UN0415.1 | Si8g14530 | - | 121 | 128 | 3.23e-05 | 0.529 | AATAATAA |
Si9g17990 | - | 1 088 | 1 095 | 3.23e-05 | 0.529 | AATAATAA | ||
Si7g30480 | + | 1 319 | 1 326 | 3.23e-05 | 0.529 | AATAATAA | ||
Si9g30300 | - | 1 314 | 1 321 | 3.23e-05 | 0.529 | AATAATAA | ||
Si7g01180 | - | 1 785 | 1 792 | 3.23e-05 | 0.529 | AATAATAA | ||
Si7g01180 | - | 389 | 396 | 6.46e-05 | 0.529 | AATAATTA | ||
Si6g16950 | - | 861 | 868 | 6.46e-05 | 0.529 | AATAATTA | ||
Si6g16950 | + | 896 | 903 | 6.46e-05 | 0.529 | AATAATTA | ||
Si7g30480 | - | 1 593 | 1 600 | 6.46e-05 | 0.529 | AATAATTA | ||
Si9g04210 | + | 1 645 | 1 652 | 6.46e-05 | 0.529 | AATAATTA | ||
Si9g04210 | - | 1 647 | 1 654 | 6.46e-05 | 0.529 | AATAATTA | ||
Si7g01180 | - | 1 793 | 1 800 | 6.46e-05 | 0.529 | AATAATTA | ||
Si7g05130 | - | 164 | 171 | 9.69e-05 | 0.56 | AATATTAA | ||
Si9g52070 | + | 249 | 256 | 9.69e-05 | 0.56 | AATATTAA | ||
Si7g01180 | - | 431 | 438 | 9.69e-05 | 0.56 | AATATTAA | ||
Si9g30300 | + | 849 | 856 | 9.69e-05 | 0.56 | AATATTAA | ||
Si7g30480 | - | 1 452 | 1 459 | 9.69e-05 | 0.56 | AATATTAA | ||
Si5g36410 | + | 1 437 | 1 444 | 9.69e-05 | 0.466 | AATATTAA |
Table 2 The analysis of binding motif between rhamnoside metabolic pathway enzyme genes and SiYABBY transcription factor
转录因子 Transcription factor | 结合基序 Motif ID | 靶基因 Target gene | 模板链 Strand | 起始位置 Start | 终止为止 End | P值 P-value | q值 q-value | 匹配序列 Matched sequence |
---|---|---|---|---|---|---|---|---|
SiYABBY8 | UN0396.1 | Si1g24720 | - | 1 734 | 1 741 | 2.65e-05 | 1 | TAATCATA |
Si1g07250 | + | 698 | 705 | 5.3e-05 | 1 | TTATCATA | ||
Si1g24750 | + | 1 165 | 1 172 | 7.95e-05 | 1 | TAATCATA | ||
Si7g05130 | + | 1 478 | 1 485 | 7.95e-05 | 1 | TAATCATT | ||
SiYABBY1 SiYABBY5 SiYABBY7 | UN0415.1 | Si8g14530 | - | 121 | 128 | 3.23e-05 | 0.529 | AATAATAA |
Si9g17990 | - | 1 088 | 1 095 | 3.23e-05 | 0.529 | AATAATAA | ||
Si7g30480 | + | 1 319 | 1 326 | 3.23e-05 | 0.529 | AATAATAA | ||
Si9g30300 | - | 1 314 | 1 321 | 3.23e-05 | 0.529 | AATAATAA | ||
Si7g01180 | - | 1 785 | 1 792 | 3.23e-05 | 0.529 | AATAATAA | ||
Si7g01180 | - | 389 | 396 | 6.46e-05 | 0.529 | AATAATTA | ||
Si6g16950 | - | 861 | 868 | 6.46e-05 | 0.529 | AATAATTA | ||
Si6g16950 | + | 896 | 903 | 6.46e-05 | 0.529 | AATAATTA | ||
Si7g30480 | - | 1 593 | 1 600 | 6.46e-05 | 0.529 | AATAATTA | ||
Si9g04210 | + | 1 645 | 1 652 | 6.46e-05 | 0.529 | AATAATTA | ||
Si9g04210 | - | 1 647 | 1 654 | 6.46e-05 | 0.529 | AATAATTA | ||
Si7g01180 | - | 1 793 | 1 800 | 6.46e-05 | 0.529 | AATAATTA | ||
Si7g05130 | - | 164 | 171 | 9.69e-05 | 0.56 | AATATTAA | ||
Si9g52070 | + | 249 | 256 | 9.69e-05 | 0.56 | AATATTAA | ||
Si7g01180 | - | 431 | 438 | 9.69e-05 | 0.56 | AATATTAA | ||
Si9g30300 | + | 849 | 856 | 9.69e-05 | 0.56 | AATATTAA | ||
Si7g30480 | - | 1 452 | 1 459 | 9.69e-05 | 0.56 | AATATTAA | ||
Si5g36410 | + | 1 437 | 1 444 | 9.69e-05 | 0.466 | AATATTAA |
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