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    26 August 2022, Volume 38 Issue 8
    Research Progress of microRNAs in Plant Stress Responses
    WANG Nan-nan, WANG Wen-jia, ZHU Qiang
    2022, 38(8):  1-11.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1345
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    microRNAs(miRNAs),endogenous non-coding RNAs containing 20-25 nucleotides,exist widely in plants. miRNAs mainly play roles at the post-transcriptional level by negatively regulating the expressions of plant genes,thereby participating in the regulation of plant growth and development,stress response,and hormone signal transduction processes. This article summarizes the current progresses on the generations and functions of miRNA,mainly focusing on their roles in the stress response,aiming to have a deeper understanding of the molecular regulatory network of miRNA in the stress response process,and to provide a reference for improving plant stress resistance through genetic engineering in the future.

    Advances in the Regulation of Plant MYB Transcription Factors in Secondary Metabolism and Stress Response
    WEI Xin-xin, LAN Hai-yan
    2022, 38(8):  12-23.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1350
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    MYB is one of the largest transcription factor(TF)families in eukaryotes,its members play important roles in plant growth and development,secondary metabolism,biotic and abiotic stress responses and other physiological processes. MYB TFs affect the development and metabolism of plants by regulating the expressions of related genes in signaling pathways via the mutual recognition of specific functional domains with target genes. So far,the functions of some members of MYB TF family have been characterized,involving the function and expression regulation of MYB in plant secondary metabolism,biotic and abiotic stresses,etc. Based on the above research progress,hereby we summarized the recent results of MYB TF study,and which is expected to provide evidence for further study.

    Research Progress in the Interactions of Strigolactone with Hormones on Regulating Root Growth
    SHEN Yue, TAO Bao-jie, HUA Xia, LV Bing, LIU Li-jun, CHEN Yun
    2022, 38(8):  24-31.  doi:10.13560/j.cnki.biotech.bull.1985.2022-0102
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    As a novel kind of phytohormones of regulating plant root system,strigolactone plays an important role in stimulating the seed germination of parasitic plants,promoting the branching of arbuscular mycorrhizal fungi and regulating the plant shoot branching. The root system is a vital organ for plants to sense the signals of the soil and absorb the nutrients,water and mineral elements,and its development and growth are affected by both external environment and endogenous hormones. Strigolactone inhibits the transportation of auxin and thus increases the size of the meristem and transition zones to regulate the elongation of the primary root,and to suppress the occurrence of the lateral root primordia and the development of the lateral root,which depends on the receptor of cytokinin AHK3. Strigolactone also regulates root hair elongation by promoting the biosynthesis of ethylene,the transportation of auxin and the expression of the auxin receptor TIR1. Here we summarized the structures and functions of strigolactone,as well as its interactions with other hormones such as auxin and cytokinin to regulate the processes of the primary root elongation,lateral root formation and root hair formation and elongation. It is aimed to lay theoretical and practical evidences for further elucidating the regulation mechanism of strigolactone in plant root growth.

    Molecular Mechanism of Terpenoids Synthesis Intermediated by Light and Jasmonates Signals
    ZHANG Chan, WU You-gen, YU Jing, YANG Dong-mei, YAO Guang-long, YANG Hua-geng, ZHANG Jun-feng, CHEN Ping
    2022, 38(8):  32-40.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1267
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    Terpenoids have important application values in medicinal,agricultural,food and digestive industries. However,its natural content in medicinal plants is generally low,which restricts its large-scale development. Light and jasmonate signals are common inducible in regulating the synthesis of plant terpenoids. The molecular mechanism of terpenoids synthesis from medicinal plants mediated by light and jasmonates signals is reviewed,and the potential research directions of terpenoids in medicinal plants are proposed.

    Impact of Endophytic Microorganisms on the Pharmaco-active Compounds Production in Medicinal Plants:A Review
    ZHANG Hao, LIU Miao-miao, LIU Xiao-na, LI Zong-yu, ZHAO Li-li, YANG Qing-xiang
    2022, 38(8):  41-51.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1487
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    Medicinal plants have been used in traditional medicine since antiquity,and they represent a very important source of natural medicines such as antimicrobial,antiviral,and antitumor molecules. Endophytic microorganisms exist widely inside the healthy tissues of living plants,and are important components of plant micro-ecosystems. In fact,many studies have demonstrated the biological and economic importance of endophytes in medicinal plants. Over the long period of their evolution,these microbes have established some special relationships with their host plants,which can significantly influence the formation of bioactive metabolic products in hosts,then affect the quality and quantity of crude drugs derived from these medicinal plants. This paper focuses on the increasing knowledge of relationships between endophytes and pharmaco-active compounds in medicinal plants through reviewing of the published data of studying endophytes in medical plants in recent years. The analytical results summarize the studies on endophytes isolated from medicinal plants,including their biodiversity,pharmacological potential,and biosynthetic mechanism affecting the formation of pharmaco-active compounds. The aim of this review is to elucidate the role mechanism and importance of endophytes in the production of natural medicines. Understanding such knowledge can help researchers apply them more effectively to improve the quality of medicinal plants,or exploit more and better natural medicines from plants or endophytes resources.

    Research Progress in Agricultural Genetically Modified Nucleic Acid Reference Materials
    LIN Ying, YANG Wen-li, ZHOU Ling-yan, JIANG Da-gang
    2022, 38(8):  52-59.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1495
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    Since the commercialization of genetically modified crops,the yield and planting area of it have increased continuously. In order to carry out more standardized management of genetically modified crops and their products,and to protect consumers’ right of knowing and choosing,it is necessary to detect genetically modified products. Genetically modified reference materials provide standardized reference for the detection of genetically modified crops and their products,which is an important basis for ensuring accuracy and consistency of test result of genetically modified crops and their products. In this paper,the certified reference materials of agricultural genetically modified crops at home and abroad are reviewed and summarized,the development of genetically modified reference materials is introduced,three common types of genetically modified reference materials are compared,issues in the development of genetically modified reference materials are sorted and suggestions also are put forward,aiming to promote the research and application of agricultural genetically modified reference materials in China.

    Construction and Activity Verification of Ribonucleoprotein Complex for Gene Editing
    GAO Wei-xin, HUANG Huo-qing, ZHAO Jing, ZHANG Xin, YANG Ning, YANG Hao-meng
    2022, 38(8):  60-68.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1353
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    CRISPR/Cas9 gene editing technology has the advantages of simple operation,low cost and high editing efficiency,and has been widely used in the research of gene editing in animals,plants and microorganisms. In this technical system,ribonucleoprotein(RNP)complex assembled from Cas9 protein and guide RNA(gRNA),exerts the function of nucleic acid cleavage. At present,there are more and more researches on direct delivery of RNP complex assembled in vitro into recipient cells for gene editing,which has become an effective means to improve editing efficiency,and reduce off-target rate. The purpose of this study is to obtain an RNP complex with high cleavage activity. In this research, the Cas9 protein was successfully expressed in Escherichia coli BL21(DE3),and the recombinant Cas9 protein was purified by His-tag affinity resin. At the same time,the T7 transcription kit in vitro transcription and purification of gRNA was performed,so that the purified Cas9 protein and gRNA spontaneously assembled into RNP complexes. After in vitro activity detection,RNP complexes demonstrated good DNA double-stranded shearing activity;and RNP was co-transformed the Aspergillus niger strain with donor DNA,the target gene was successfully knocked out,and the editing efficiency reached more than 90%. The RNP complex obtained in this study can be applied to gene editing of filamentous fungi,saving time and cost,and promoting the application of RNP-mediated gene editing technology in more fields.

    Construction of an Ultra-sensitive Colorimetric Biosensor for Insect Resistance Genes Based on Loop-mediated Isothermal Amplification
    LI Jia-le, LIN Sheng-hao, XU Wen-tao
    2022, 38(8):  69-76.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1062
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    With the development of genetically modified technology,the development of rapid,stable and simple detection technology for genetically modified crop has always been a hot spot. In this paper,a super-sensitive colorimetric biosensor based on loop-mediated isothermal amplification(LAMP)was developed,using bromophenol thyme blue as the chromogenic reagent. This method can detect the Cry1Ac and Cry1Ab/Ac genes in general,and has good specificity. The new pH indicator bromophenol thyme blue has little effect on LAMP,can achieve one-step closed-tube visual detection,solve the problem of easy pollution of LAMP,and realize semi-quantitative detection with naked eyes under natural light. The final optimized system is the final concentration of Tris 3.25 mmol/L,and the addition amount of 0.1% bromophenol thyme blue is 1.5 μL. Under these conditions,a single copy of the target gene can be detected within 1 h. This method combines sensitivity,specificity and stability,is of simple operation,and suitable for on-site detection. It provides specific operation methods for Cry1Ac and Cry1Ab/Ac gene universal detection and a new LAMP colorimetric signal output method,which not only improves the detection system for genetically modified products,also enriches the signal output methods of the LAMP biosensor.

    Screening and Identifing the Interacting Proteins of Grouper(Epinephelus coioides)EcBAG3 Using Yeast Two-hybrid System
    CAI Jia, LIANG Zhen-yu, HUANG Yu, LU Yi-shan, SHI gang, JIAN Ji-chang
    2022, 38(8):  77-83.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1368
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    The EcBAG3 protein involved in the antiviral immune response of grouper(Epinephelus coioides)was used as the research object,and the interacting proteins of EcBAG3 were screened and identified by yeast two-hybrid technology. Firstly,a yeast two-hybrid cDNA library of grouper(Epinephelus coioides)spleen cells was constructed. The capacity of the library was 5.6×106 CFU,the average length of the inserted cDNA fragments was over 750 bp,and the recombination rate was 100%. Furthermore,the interaction factors of Ec-BAG3 were screened from this library and 83 positive clones were initially obtained. Finally 7 candidate interacting proteins were confirmed through sequencing and one-to-one interaction verification. The functional prediction showed that the interacting proteins were involved in immune regulation,transcriptional regulation,stress response,signal transduction,etc.,which laid a foundation to further understand the mechanism of EcBAG3 during viral infection.

    Research Progress in the Detection Methods of Short Chain Fatty Acids in Animal Samples
    LIU Na, JIAO Jing-lin, RAO Zheng-hua
    2022, 38(8):  84-91.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1429
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    Short chain fatty acids are also known as volatile fatty acids. At present,its detection method is often used in the research direction of animal intestinal microflora health and feed nutrition. In this paper,the methods for detecting short-chain fatty acids in different types of animal samples in recent years are reviewed,and the advantages and issues of each method are discussed,so as to provide a method reference for the detection of short-chain fatty acids in animal samples in the future. With the development of high resolution mass spectrometry,more convenient and higher sensitive detection techniques should be developed in the future.

    pOsHAK1OsFLN2 Expression Enhances the Drought Tolerance by Altering Sugar Metabolism in Rice
    CHEN Guang, LI Jia, DU Rui-ying, WANG Xu
    2022, 38(8):  92-100.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1499
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    Sugar synthesis and transport are key processes in plants response to drought stress. Ectopic expression of OsFLN2 gene driven by the promoter of OsHAK1 encoding a drought-enhanced potassium transporter may improve the growth of root system by affecting sugar metabolism in rice under drought stress. The net photosynthetic rate and sucrose phosphate synthase activity in the leaves of the pOsHAK1OsFLN2 transgenic seedlings increased,but the sucrose contents of the leaves and roots markedly decreased and increased,respectively,resulting from the enhanced sucrose translocation in phloem under drought conditions. pOsHAK1OsFLN2 transgenic lines demonstrated better tolerance to drought stress than wild-type(WT)ones. In comparison to WT,the transgenic lines had higher accumulations of proline,and lower level of lipid peroxidation. Further investigation revealed that in response to the drought treatment,stress-responsive genes were notably up-regulated in the transgenic plants,however,senescence-associated genes were less abundantly transcribed than in WT. The results suggest that improving sugar metabolism via the expression of pOsHAK1OsFLN2 may be beneficial to increasing drought tolerance and rice productivity under drought stress.

    Identification of FtCBL Genes in Fagopyrum tataricum and Their Stress Responses to Drought and High Calcium
    GUAN Zhi-xiu, WANG Yan, LIANG Cheng-gang, WEI Chun-yu, HUANG Juan, CHEN Qing-fu
    2022, 38(8):  101-109.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1367
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    Plant CBL genes play important roles in stress response. It is of great significance to identify FtCBL genes of tartary buckwheat(Fagopyrum tataricum L.)and to explore its responses to drought and high calcium stress. Bioinformatics methods were conducted to identify the FtCBL gene of tartary buckwheat. The expression of FtCBL gene under drought,high calcium and combined drought and high calcium treatment was investigated by mimicing stress. A total of 5 FtCBL genes with conserved EF-hand calcium-binding domain were identified,which were located at chromosome Ft3(2),Ft4(1)and Ft5(2). Their cDNA length was 642-684 bp,encoding 213-227 amino acids with highly conserved sequence. The CAT and APX enzyme activities of tartary buckwheat increased sharply under drought,but the difference was insignificant under high calcium,indicating that tartary buckwheat was relatively suitable for growing under high calcium environment. Under drought stress,FtCBL1 was down-regulated at 8 and 24 h,but FtCBL2 at 8 and 24 h and FtCBL3-1 at 8 h were up-regulated. Under high calcium stress,FtCBL1 at 8 and 24 h and FtCBL9 at 24 h were down-regulated,whereas FtCBL2 was up-regulated. Under combined drought and high calcium stress,FtCBL3-1 was up-regulated at 8 and 24 h. A total of 5 FtCBL genes are identified in tartary buckwheat. FtCBL1 and FtCBL2 are induced by drought stress and high calcium stress,respectively,FtCBL3-1 is induced by drought stress and combined drought and high calcium stress,and FtCBL9 is induced by high calcium stress.

    Bioinformatics Analysis, Subcellular Localization and Toxicity Verification of Effector g11335 in Tilletia contraversa Kühn
    GUO Zhi-hao, JIN Ze-xin, LIU Qi, GAO Li
    2022, 38(8):  110-117.  doi:10.13560/j.cnki.biotech.bull.1985.2022-0414
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    This research focused on analyzing the biological function of effector protein encoded by g11335 gene of Tilletia contraversa Kühn. Effector g11335 was an effector protein of GSDH family which may affect the plant healthy. The physicochemical properties, conserved domain, transmembrane domain, hydrophilicity and hydrophobicity of effector g11335 were analyzed using a variety of bioinformatics databases, and the expression vector g11335-pBin was constructed for subcellular localization analysis. The results showed that g11335 gene was 1 389 bp in length and encoded 462 amino acids. Subcellular localization of the effector protein showed that the protein was localized on the cell membrane. Tobacco toxicity test revealed that the effector protein was not toxic.

    Research on Mechanism and QTL Mapping Associated with Cadmium Accumulation in Rice Leaves and Grains
    HUANG Jing, ZHU Liang, XUE Peng-bo, FU Qiang
    2022, 38(8):  118-126.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1192
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    Rice is the most important staple food in China,thus mining the key genes controlling cadmium(Cd)accumulation in rice leaves and grains and clarifying the genetic mechanism of Cd accumulation and transport may provide the basis for breeding rice varieties with low cadmium accumulation and ensuring food security and human health. Inomics screening was performed to systemically profile ionic spectrum in the grains of 209 rice varieties from the Rice Core Germplasm cultivated in China. The accessions with differential cadmium and/or iron(Fe)/zinc(Zn)accumulations were identified,from which indicia cultivar HQ03 and japonica cultivar SKC were selected for further study. Results showed that there was no significant difference in cadmium tolerance and uptake between the two varieties,and Cd accumulations in the HQ03 shoots and grains were significantly higher than those in SKC,while no difference in Fe,Zn,etc. Using a doubled haploid(DH)population derived from HQ03 and SKC of 137 individuals,8 quantitative trait loci(QTL)controlling Cd accumulation in the leaves and grains were identified on chromosome 2,3,4,7,8,10 and 11,accounting for 10.6%-39.4% of the phenotypic variance detected. Among them,qGCd3,controlling Cd transport to grains,was delimited in the interval of RM6266-RM2334 on chromosome 3,with an LOD(limit of detection)value of 3.81 and a phenotypic contribution of 39.4%,indicating that an important gene controlling cadmium transport to grain may exist here.

    Cloning and Functional Analysis of Gene GhTIFY9 Related to Cotton Verticillium Wilt Resistance
    LI Xiu-qing, HU Zi-yao, LEI Jian-feng, DAI Pei-hong, LIU Chao, DENG Jia-hui, LIU Min, SUN Ling, LIU Xiao-dong, LI Yue
    2022, 38(8):  127-134.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1519
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    The function of TIFY family gene GhTIFY9 in cotton verticillium wilt response was preliminarily explored,which laid a foundation for mining cotton disease resistance related genes and cotton disease resistance breeding. A TIFY family gene GhTIFY9 was obtained by transcriptome screening and cloning. The physicochemical properties of the gene were analyzed by bioinformatics methods. The expression pattern of GhTIFY9 under verticillium wilt induction was analyzed by real-time quantitative polymerase chain reaction(RT-qPCR). Meanwhile,the VIGS vector of the gene was constructed,and its function in the cotton resistance to verticillium wilt was preliminarily explored by virus-induced gene silencing(VIGS)technology. GhTIFY9 was cloned using the cDNA of upland cotton TM-1 as the template. The open reading frame(ORF)of GhTIFY9 was 594 bp,encoding an alkaline hydrophilic protein containing 197 amino acids. The relative molecular weight was 21.65 kD,it was located in the nucleus and belonged to the TIFY subfamily. RT-qPCR analysis showed that GhTIFY9 responded to verticillium wilt induction,and the sensitivity of silent plants to verticillium wilt was significantly enhanced after inhibiting the expression of this gene. GhTIFY9 is a positive regulator of cotton resistance to verticillium wilt.

    Prokaryotic Expression,Antibody Preparation and Application of Rice Caffeoyl Coenzyme A-O-methyltransferase Gene
    SUO Qing-qing, WU Nan, YANG Hui, LI Li, WANG Xi-feng
    2022, 38(8):  135-141.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1509
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    Caffeoyl-coenzyme A-O-methyltransferase(CCoAOMT)plays an important role in the biosynthesis of plant lignin. At present,the research on rice CCoAOMT mainly focuses on the gene level,only few researches on its function at the protein level. In this paper,OsCCoAOMT1 gene was cloned by PCR amplification technology,and prokaryotic expression vector pET30a(+)-OsCCoAOMT1,then transformed into Escherichia coli,and the recombinant protein was expressed. Purified protein immunized New Zealand male rabbits of polyclonal antibodies were successfully prepared. Western blot analysis showed that the antibody specifically bound to the protein in different tissues of rice. Immunofluoresent labeling assay revealed that the signal of this protein can be marked in Ubi:OsCCoAOMT1-GFP transgenic rice and wild-type rice protoplasts via laser confocal microscopy. Furthermore,the GFP signal of the transgenic rice fusion protein can be co-localized with the fluorescent signal of the protein antibody. Combined with the Western blot analysis of rice nucleoplasm protein isolation,OsCCoAOMT1 protein is mainly distributed in the cytoplasm. This indicated that the prepared antibody can be used for the specific detection of the protein and laid a good foundation for the subsequent functional research of rice CCoAOMT.

    Prokaryotic Expression and Preparation of Polyclonal Antibody of PwHAP5 Gene in Picea wilsonii
    QIN Xue-jing, WANG Yu-han, CAO Yi-bo, ZHANG Ling-yun
    2022, 38(8):  142-149.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1404
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    Specific polyclonal antibodies against PwHAP5 gene of Picea wilsonii were prepared to provide the experimental data for follow-up studies of PwHAP5 protein localization,expression and function. The PwHAP5 gene fragment from P. wilsonii pollen was amplified by PCR and then was inserted into vector pET-48b for constructing the recombinant plasmid pET-48b-PwHAP5. The recombinant protein of PwHAP5 was induced and was purified by His-NTA nickel column. The expressed recombinant protein was tested by SDS-PAGE and injected into New Zealand rabbits as an antigen to obtain antiserum. Antiserum was purified by ProteinA,the purity and specificity of the antibody was identified by SDS-PAGE and Western blot method. As results,the prokaryotic expression vector pET-48b-PwHAP5 was successfully constructed,and the PwHAP5 protein with molecular weight of 45 kD was prepared. The titer of PwHAP5 rabbit antiserum was more than 1∶729 000 via indirect ELISA. The prepared PwHAP5 protein of rabbit polyclonal antibody has a high titer and specifically recognize antigen,which can meet the requirements of subsequent studies on the functions of PwHAP5 in the growth and development of P. wilsonii.

    Transcription of Ethylene Biosynthesis and Signaling Associated Genes in Response to Heterodera glycine Infection
    GUO Bin-hui, SONG Li
    2022, 38(8):  150-158.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1414
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    Ethylene is an important plant hormone. Its synthesis and signal transduction related genes are involved in the regulation of plant growth,development and defense response. In order to clarify the effects of soybean cyst nematode infection and colonization on ethylene biosynthesis and signal transduction pathway,the expressions of ethylene synthesis gene GmACS and signal transduction gene GmEIN in soybean roots inoculated with and without cyst nematode were compared by fluorescence quantitative PCR. The results showed that compared with susceptible varieties,the ethylene biosynthesis in resistant varieties was significantly regulated,and in which 6 GmACSs genes were significantly induced in PI 548316,while significantly inhibited in PI 437654 and PI 88788. Meanwhile,several GmEINs was slightly up-regulated in 4 resistant varieties,but not significantly regulated in other resistant varieties and two susceptible varieties. The results show that ethylene synthesis in some soybean varieties are significantly regulated by soybean cyst nematode infection and colonization,and the regulated genes can be used as candidates for improving soybean disease resistance breeding.

    Screening and Identification of Endophytic Bacteria with Nematicidal Activity Against Bursaphelenchus xylophilus in Pinus massoniana
    HE Li-na, FENG Yuan, SHI Hui-min, YE Jian-ren
    2022, 38(8):  159-166.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1393
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    The purpose of this study is to explore the diversity of endophytic bacteria in Pinus massoniana,and to search for endophytic bacteria with nematicidal activity against Bursaphelenchus xylophilus. With 58 endophytic bacteria isolated from healthy P. massoniana in Nanjing Zhongshan Mausoleum as the research object,and the nematicidal activity against B. xylophilus of endophytic bacteria in fermentation filtrate was determined by immersion method. The species of endophytic bacteria with high nematicidal activity against B. xylophilus were identified by morphological observation,physiological and biochemical characteristics,16S rDNA sequence and phylogenetic tree methods. An endophytic bacterium NZM13-11 was selected with obvious nematicidal activity against B. xylophilus. The adjusted mortality rate of B. xylophilus reached 92.2% after mixing the fermented filtrate of NZM13-11 with B. xylophilus for 12 h,and reached 100% after 36 h. In addition,the body of B. xylophilus was decomposed at 12 h,the decomposition rate reached 85%. After 48 h,the decomposition rate reached 100%,and there was no complete body under the microscope. After the fermentation filtrate was diluted at different multiples,the mortality rate was still as high as 72.9% after 36 h of 8-fold dilution treatment.The strain NZM13-11 was identified as Pseudomonas aeruginosa by morphological observation,physiological and biochemical characterization,16S rDNA sequence and phylogenetic tree analysis. This study shows that an endophytic bacterium NZM13-11 screened from p P. massoniana trees can efficiently kill B. xylophilus,and the strain is identified as Pseudomonas aeruginosa. This research results can be further deepened to explore the possibility of using endophytic bacteria resources of P. massoniana to prevent and control pine wilt diseases.

    Screening and Plant Growth Promoting of Grow-promoting Bacteria in Rhizosphere Bacteria of Angelica dahurica var. formosana
    JIANG Mei-yan, ZHOU Yang, LIU Ren-lang, YAO Fei, YANG Yun-shu, HOU Kai, FENG Dong-ju, WU Wei
    2022, 38(8):  167-178.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1386
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    The aim of the study is to explore and utilize the growth promoting potential of rhizosphere bacteria of Angelica dahurica var. formosana and to provide a new way for high yield and quality of A. dahurica var. formosana. Functional media were used to isolate and screen plant growth promoting rhizobacteria(PGPR)in the rhizosphere of A. dahurica var. formosana. Then morphological characteristics and 16S rDNA sequence were to comprehensively identify the PGPR strains. Pot experiment was conducted to verify the effects of the screened strain with the strongest growth promoting ability on BZA001 and BZB003 variety(line)of A. dahurica var. formosana. The results showed that a total of 77 strains of bacteria were isolated,among which 23 strains had the ability of fixing nitrogen,20 strains had the ability to dissolving inorganic phosphorus,4 strains had the ability of producing siderophores,7 strains had the ability of producing IAA,and all strains had no ability of dissolving potassium. Most of the 31 PGPR strains with strong growth promoting ability belonged to Bacillus,accounting for 64.52%. Of all the isolated PGPR strains,Klebsiella strain XI-1 had the strongest comprehensive growth promoting ability. Without fertilization,the 2 strains significantly increased the growth and yield of two A. dahurica var. formosana varieties(line)BZA001 and BZB003 by 31.85% and 64.59%. To a certain extent,it alleviated the restriction of fertilizer deficiency on A. dahurica var. formosana. Most of the PGPR in the rhizosphere of A. dahurica var. formosana were Bacillus. However,Klebsiella XI-1 has the strongest growth promoting potential and may significantly improve the yield of A. dahurica var. formosana. Thus there is the potential of developing it into a microbial agent of A. dahurica var. formosana.

    Screening and Identification of High-efficiency Phosphate Solubilizing Bacteria in Tobacco Rhizosphere and Its Growth-promoting Effects
    LIU Guang-chao, YE Qing, CHE yong-mei, LI Ya-hua, AN Dong, LIU Xin
    2022, 38(8):  179-187.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1511
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    In order to obtain high-quality phosphate-solubilizing bacterial resources and enhance agricultural production efficiency,we screened phosphorus-solubilizing bacteria from the tobacco rhizosphere soil of Fangshi township,Gaomi city,Shandong province,among which the highly efficient phosphate-solubilizing bacterium 3P29 was identified by molecular biology,then the ability of phosphate-solubilizing and growth-promoting effect were further studied. The strain 3P29 was identified as Acinetobacter pittobacter and the transformation amount of lecithin and calcium phosphate were 13.38 mg/L and 19.83 mg/L,respectively,indicating that the strain 3P29 efficiently decomposed organic and inorganic phosphorus. Tobacco pot experiment showed that the primary root of tobacco became longer and more lateral roots were produced,thereby enhancing the absorption of nutrient elements by the roots. The total nitrogen,phosphorus and potassium content of tobacco leaves increased by 71%,49% and 134% under the conditions of phosphorus-free nutrient solution,which may provide superior strain resources for the development and utilization of phosphate solubilizing bacterial fertilizers.

    Effects of msn2 Knock-out on the Growth and Kojic Acid Production of Aspergillus oryzae
    SHI Ya-nan, WANG De-pei, WANG Yi-chuan, ZHOU Hao, XUE Xian-li
    2022, 38(8):  188-197.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1492
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    Msn2,as a C2H2-type zinc finger structure transcriptional activator,is involved in regulating biological processes such as fungal growth rate,conidial development and various stress responses. In this thesis,Aspergillus oryzae 3.042 was used as the starting strain to construct the pyrG nutrition-deficient strain. The upstream and downstream sequences of msn2 gene were as homologous recombination arms and the complementary pyrG gene was used as the screening marker. Finally,a mutant strain g-5 with msn2 knockout and the complementary pyrG gene was obtained. Compared with the original strain A. oryzae 3.042,the growth of strain g-5 was inhibited and the spore production significantly reduced by 60%. Strain g-5 could not sporulate in the environment containing 10% or more glucose,but tolerated 30 mmol/LH2O2. g-5 achieved 21.55 g/L kojic acid in shake flasks,which was 81% higher than that of A. oryzae 3.042(11.86 g/L). By RT-qPCR analysis,the msn2 gene was not expressed in strain g-5 compared with A. oryzae 3.042. After 6 d of fermentation,the expressions of kojR and LaeA genes related to kojic acid synthesis increased by 4.13 and 21 times,respectively. The expressions of mycelial growth and sporulation related genes brlA and tps1 in g-5 strain were down-regulated by 63 and 128 folds compared with A. oryzae 3.042,while the expressions of ageB gene were up-regulated by 59 folds.

    Editing pyrG Gene of Monascus by CRISPR/Cas 9 and Its Effects on Secondary Metabolism
    TANG Guang-fu, GUI Yan-ling, MAN Hai-qiao, ZHAO Jie-hong
    2022, 38(8):  198-205.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1482
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    In order to study the effects of pyrG gene of monascus on its secondary metabolism,the monascus chassis strain with Cas9 was obtained by agrobacterium-mediated genetic transformation. Then the directed-editing sgRNA of pyrG gene were designed and synthesized in vitro. After genetic transformation of protoplast of chassis strain,4 mutant strains were screened out,including 2 strains of single-base deleted mutation and 2 strains of double-base deleted mutation,analyzed by resistant on 5-FOA,PCR amplification,T7EI digestion and sequencing. Comparative analysis showed that the content of lovastatin of the wild-type strain significantly increased,and the content of citrinin significantly decreased when cultured in the medium supplemented with uracil. The contents of lovastatin and citrinin of pyrG mutants increased. The results showed that uracil nucleoside and pyrG gene had regulatory effects on secondary metabolism of monascus. It provides reference for functional gene research and secondary metabolism regulation of monascus.

    Diversity of Soil Protist Community in the Rhizosphere of Morus alba L. at Different Tree Ages
    WANG Zi-ye, WANG Zhi-gang, YAN Ai-hua
    2022, 38(8):  206-215.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1377
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    Protists play a pivotal role in the soil microbiome,and it is important to study the distribution pattern of protists in the temporal and spatial dimensions and their effects on the microecology of the root system. In this study,we followed the trading space for time and selected soil around the rhizosphere of mulberry plants at different ages(10,80 and 200 years old)in the same mulberry(Morus alba L.)orchard as sample. Then we used Illumina high-throughput sequencing technology to determine the diversity of soil protists and differences in community composition and to analyze their drivers,which may provide a basis for exploring the ecological stability mechanisms of mulberry inter-rooted protists. The results showed that the dominant phylum species of mulberry native community were basically the same among different ages,mainly Chrysophyta,Kinetoplastida,Bacillariophyta,Rotaliida,Oomycetes and Petalomonadida,but the relative abundance varied among different ages in Paracercomonas,Petalomonas,Acanthamoeba,and Rhynchomonas were the genera with significant differences in relative abundance at 10a vs 80a,10a vs 200a,and 80a vs 200a years of age,respectively,indicating significant age variation in the composition and relative abundance of the soil native community at the genus level. Native community diversity,abundance and evenness were in very significantly negative correlation with chloride ion,Simpson index was significantly and negatively correlated with total salt and community cover was significantly and positively correlated with potassium ion and alkaline nitrogen content. In sum,there are common environmental preferences or potential biological interactions among the protists and fungi and bacteria in the rhizosphere of mulberry..

    Role of C2H2 Zinc Finger Transcription Factor FpCzf7 in the Growth and Pathogenicity of Fusarium pseudograminearum
    ZHAO Jing-ya, PENG Meng-ya, ZHANG Shi-yu, SHAN Yi-xuan, XING Xiao-ping, SHI Yan, LI Hai-yang, YANG Xue, LI Hong-lian, CHEN Lin-lin
    2022, 38(8):  216-224.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1457
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    Fusarium crown rot caused by Fusarium pseudograminearum has become one of the most destructive diseases of wheat in China. However,its molecular mechanism of pathogenicity is known little. C2H2 zinc finger transcription factors have been characterized from a wide variety of organisms,including animals,plants and fungi,and they are involved in the physiological processes such as growth,development and stress responses. In this study,a gene FpCzf7 encoding C2H2 zinc finger transcription factor was identified,and its deletion mutants(Δfpczf7)was obtained by PEG-mediated genetic transformation. Further analysis revealed that Δfpczf7 mutants grew significantly slowly on PDA plates and less aerial hyphae compared with that of wild type(WT)and the complement strains(Δfpczf7-cp). Conidiation of the FpCzf7 deletion mutant in CMC liquid reduced as well,but their conidia morphology and germination were normal. Also,Compared to WT and Δfpczf7-cp,the pathogenicity caused by the FpCzf7 deletion mutant decreased on wheat coleoptile and spike and barley leaves,and DON toxin production reduced in the Δfpczf7 strain. Collectively,these results indicate that FpCzf7 is involved in growth,conidiation and pathogenicity and toxin production in F. pseudograminearum.

    Effects of Ganoderma resinaceum Alcohol Extract on Sleep and Intestinal Microbiota in Mice
    CHEN Tian-ci, WU Shao-lan, YANG Guo-hui, JIANG Dan-xia, JIANG Yu-ji, CHEN Bing-zhi
    2022, 38(8):  225-232.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1470
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    The aim of this study is to investigate the effects of Ganoderma resinaceum alcohol extract(GRAE)on sleep and intestinal microbiota in mice,and to analyze the association between intestinal microbiota and sleep. The sleep rate and sleep duration of mice under sodium pentobarbital induction were observed by continuously gavaging for 30 d,and the sleep latency of mice induced by sodium barbiturate was observed. The serum of mice was tested and the effect of GRAE on the abundance of intestinal microbiota in the mice was analyzed by 16S rDNA sequencing. The results showed that GRAE prolonged the sleep duration of mice induced by sodium pentobarbital,increased the sleep rate of mice hypnotized by pentobarbital sodium subthreshold dose,shortened the sleep latency of mice induced by sodium pentobarbital,and decreased the serum levels of glucose(GLU)and triglyceride(TG)in mice. 16S rDNA results showed that GRAE increased the abundance of Bacteroidetes and Actinobacteria at the phylum level;at the genus level,GRAE increased the abundance of Bifidobacterium,and decreased the abundance of Lactobacillus and Klebsiella. Therefore,GRAE can regulate the abundance of intestinal microbiota,which in turn affects the sleep quality of mice.

    Cloning and Expression Analysis of TRAF6 from Large Yellow Croaker Larimichthys crocea
    CHEN Ying, WANG Yi-lei, ZOU Peng-fei
    2022, 38(8):  233-243.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1389
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    Tumor necrosis factor receptor-associated factor 6(tRAF6)is an important member of the TRAF family,which participate in the regulation of pattern recognition receptors mediated signaling pathways and play important roles in host innate immune response. In the present study,one ortholog of TRAF6 gene was cloned and identified in large yellow croaker(Larimichthys crocea). The identified ORF of TRAF6 gene was 1 725 bp,encoding a protein of 574 aa,with the gene structure composed of 7 exons and 6 introns. Subcellular localization analysis showed that TRAF6 was located in the cytoplasm,and obvious aggregation was identified around the nucleus. Expression analysis indicated that TRAF6 was widely expressed in different tissues/organs of healthy large yellow croakers,with the highest expression in the blood and the lowest expression in the brain. Additionally,the mRNA expressions of TRAF6 in the gill,spleen,head kidney,intestine,and blood were significantly upregulated in response to Poly I:C,LPS,PGN and Pseudomonas plecoglossicida stimulations. In conclusion,the present study revealed the sequence as well as expression patterns of the TRAF6 in large yellow croaker,providing a reference for further investigation on the function and molecular mechanism that TRAF6 involved in host immune response.

    Expressions of Genes Related to Polyamine Metabolism and Muscle Development in Muscle Tissues of Duck at Different Ages
    ZHOU Xue-min, KANG Li-juan, GUO Yong-ni, YANG Xiao-han, JIANG Yi-long, WANG Ze-long, SUN Qian, KANG bo
    2022, 38(8):  244-251.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1303
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    In order to study and clarify the expression changes of genes related to polyamine metabolism and muscle development in ducks’ muscle tissue,high performance liquid chromatography and RT-qPCR method were used to detect the polyamine contents and the expressions of polyamine metabolism and muscle development-related genes in the breast and leg muscle tissues during duck postnatal stage on day 0 to 120,and then to analyze the correlation between the expressions of muscle development-related gene and polyamine metabolism. Results showed that the contents of putrescine,spermidine and spermine in the duck breast and leg muscle at 0 days were the highest,and the polyamine metabolism genes in the breast and leg muscle tissue showed regular changes,respectively. In pectoral muscle tissue,the expressions of MyoD1 and Myf5 were the highest in 0 days,MyoG and IGF-1 were the highest at 30 days,and MSTN had the highest expression at 90 days,and MyoD1 and Myf5 genes were significantly and positively correlated with SPMS,SPDS,SSAT,and SMO genes. In leg muscle,ODC was significantly and positively correlated with MyoD1 and MSTN gene. The above results suggest that the changes in polyamine content,polyamine metabolism and muscle development-related gene expression in duck muscle tissues present a certain similarity,so as to provide the reference for studying polyamine regulating duck muscle development action mechanisms.

    Identification of the Thermostable Laccase Gene ba4 and Characterization of Its Enzymatic Properties
    WANG Yu-chen, DING Zun-dan, GUAN Fei-fei, TIAN Jian, LIU Guo-an, WU Ning-feng
    2022, 38(8):  252-260.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1422
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    Laccase(EC 1.10.3.2)is an oxidoreductase,and it has application value in the oxidative degradation of toxic and carcinogenic compounds. Through sequence analysis,thermostable laccase gene ba4 was screened from the UniParc database. The gene full length was 1,860 bp,encoding 620 amino acids. By optimal reaction temperature regression prediction model(PMT),it was predicted that BA4 laccase was a thermostable enzyme. Comparison analysis in the NCBI protein database showed 58.75% similarity with the multicopper oxidase of copper-resistance system from Klebsiella michiganensis(STW26195.1),proving that laccase ba4 was new laccase gene in the Copper_res_A superfamily. The entire sequence was synthesized and heterologously expressed in Escherichia coli BL21(DE3)and purified. The results of characterization demonstrated that the enzyme had high activity at a temperature of 45-65℃,the optimal temperature and pH were 50℃ and 5.5. The Michaelis constant Km measured with ABTS as the substrate was(2 144.5±358.5)μmol/L,the kcat was(44.06±3.14)min-1,the maximum reaction rate Vmax was 623.2 μmol/(min·g),and the kcat/Km was(0.020 9±0.002)L/(μmol·min). The degradation rate reached > 90% while laccase BA4(60-70 U/L)reacted with zearalenone(0.1 mg/mL)at 50℃ for 2 h. The degradation rate was 30% when laccase BA4(70-80 U/L)reacted with gossypol(1 mg/mL)at 40 and 50℃ for 1 h. The promising enzymatic properties of laccase BA4 and the effective degradation of zearalenone and gossypol have laid a good foundation for the application of the enzyme.

    Research Progress of Silage Additives Based on Bibliometrics
    REN Hai-wei, SUN Yi-fan, REN Yu-wei, GUO Xiao-peng, PAN Li-chao, ZHANG Bing-yun, LI Jin-ping
    2022, 38(8):  261-274.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1383
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    Ensiling fermentation is an important strategy of trans-seasonal preservation of crop straw and forage grass,which is also one of the traditional production methods of animal feed. The addition of silage additives during ensiling process plays an important role for the improvement of ensiling quality,aerobic stability,and utility value. In order to understand the study status and hotspot on silage additives,the literature on silage additives published during the period 2005-2020 were analyzed via the bibliometrics and comprehensive visual analysis based on the core collection of Web of Science and CNKI databases,aiming to provide helps for researchers in defining research direction,conducting scientific research and understanding the field hotspot. The results showed that there were 70 countries or regions,965 research institutions involved the research on silage additives,and the results were published in 187 journals,and cross-regional cooperation was frequent. the total number of publications increased substantially in recent years,suggesting that more and more researchers have begun to pay attention to the investigation on silage additives. The United States,Brazil,Canada and China were identified as the most productive country of researches and presented strong interactional cooperative relationship. Moreover,the literatures from the United States and Canada scholars were more cited frequently in comparation to other countries. The animal husbandry,agriculture and veterinary science are the main research discipline with the feature of multidisciplinary and interdisciplinary. For the past few years,the most attention of silage additives have been paid to lactic acid bacteria and cellulase,and the addition effects of additives on ensiling quality and aerobic stability have become a research hotspot in the field of silage additives,whether or not the single or mixed additives.