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    26 February 2026, Volume 42 Issue 2
    Anaerobic Microorganisms: The Vast Unknown, the Infinite Future
    CHENG Lei
    2026, 42(2):  1-2. 
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    Advances in the Symbiotic Mechanisms of Anaerobic Methanotrophic Archaea
    ZHAO Yu-ting, YU Hang
    2026, 42(2):  3-16.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1100
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    Anaerobic oxidation of methane (AOM) is a key process in the global carbon cycle, playing a vital role in curbing methane emissions and mitigating climate change. The primary mediators of this process are anaerobic methanotrophic archaea (ANME), which oxidize methane either independently or in cooperation with partner bacteria by coupling AOM to terminal electron acceptors with varying redox potentials, such as sulfate, humic substances, metal oxides, and nitrate. AOM coupled to sulfate reduction yields extremely low Gibbs free energy change (ΔG°' = -17 kJ/mol), and the energy yield must be efficiently allocated with their symbiotic sulfate-reducing bacterial (SRB). Consequently, the symbiotic mechanism in AOM has been a central research focus since the discovery of ANME in 1999. This review outlines the research progress on the microorganisms mediating AOM, with an emphasis on three hypothesized symbiotic models between ANME and SRB: diffusible chemical intermediates, zero-valent sulfur, and direct interspecies electron transport. Additionally, we summarize the phylogenetic diversity and potential interaction mechanisms of ANME and their symbiotic or associated partners revealed by environmental observations and enrichment cultures. Together, these advances have not only enhanced our understanding of the AOM process but also paved the way to uncover the full range of interspecies interaction mechanisms and broaden potential biotechnological applications.

    Energy Metabolism and Extracellular Electron Transfer of Methanosarcina and Methanothrix
    ZHOU Jin-jie, LI Meng
    2026, 42(2):  17-29.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0997
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    Aceticlastic methanogens are the primary drivers of methane production in natural environments, contributing approximately two-thirds of global biogenic methane. This review systematically summarizes the physiology, morphology, substrate utilization, core metabolic pathways, and electron transfer and energy conservation mechanisms of two representative aceticlastic methanogens—Methanosarcina and Methanothrix. We comprehensively compare their differences in acetate activation strategies, coenzyme regeneration pathways, and energy conservation modes, revealing their metabolic adaptations and ecological niche differentiation under varying environmental conditions. The review further highlights research progresses in extracellular electron transfer, including direct interspecies electron transfer, microbial electrochemical corrosion, and extracellular respiration, and elucidates their underlying molecular mechanisms and energy conservation strategies. This review provides an integrated perspective on the metabolic networks and electron flow regulation of aceticlastic methanogens and lays a theoretical foundation for future studies on their environmental adaptation and metabolic control.

    Research Progress in Strategies for Enhancing Methane Production from Anaerobic Digestion of Lignocellulosic Biomass
    WANG Jing, ZHU Wei-min, ZHANG Xing-ze, LI Peng, XING De-feng
    2026, 42(2):  30-40.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0963
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    Lignocellulosic biomass is the most abundant renewable organic carbon source, and anaerobic digestion can convert it into biogas (mainly methane), offering both energy recovery and emission reduction benefits. However, its dense and complex “cellulose-hemicellulose-lignin” structure, together with the formation of inhibitory by-products during degradation, leads to hydrolysis limitations and microbial instability, which become the bottleneck to efficiency. Conventional pretreatment technologies, including physical, chemical, physicochemical, and biological methods, can improve substrate degradability to some extent but still suffer from high energy consumption, high cost, and the generation of undesirable by-products. In recent years, research has increasingly focused on green and efficient emerging approaches, such as pulsed electric fields, electron beam irradiation, deep eutectic solvents (DES), and nanozymes, which have shown potential in enhancing substrate hydrolysis and promoting methane production. Meanwhile, multidimensional process intensification strategies, such as co-digestion, conductive materials, external magnetic fields, and bioelectrochemical interventions, continue to drive improvements in degradation efficiency and methane yield. With the advancement of artificial intelligence and data science, modeling has gradually shifted from traditional mechanistic frameworks such as Anaerobic Digestion Model No. 1 (ADM1) toward hybrid “mechanism + data” approaches, integrating methods such as artificial neural networks (ANN), support vector machines (SVM), random forests (RF), and extreme gradient boosting (XGBoost) to enable performance prediction and process optimization. This paper systematically reviews the structural characteristics and digestion bottlenecks of lignocellulose, summarizes the development and application prospects of emerging pretreatment and intensification strategies, and discusses the evolution of intelligent modeling for process optimization and risk prediction.

    Advances in Mechanisms and Applications of Fiber Degradation by Anaerobic Fungi
    LI Liu-xue, CHENG Yan-fen
    2026, 42(2):  41-50.  doi:10.13560/j.cnki.biotech.bull.1985.2026-0012
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    Anaerobic fungi (Neocallimastigomycota) are important lignocellulose-degrading microorganisms in the gastrointestinal tracts of herbivores, characterized by a unique life cycle, specialized hydrogenosomes, and potent cellulolytic and hemicellulolytic capabilities. In recent years, advances in taxonomic systems and molecular techniques have propelled research on anaerobic fungi from morphological studies toward genomics, metabolomics, and cellular structural analyses, revealing their multi-level synergistic mechanisms in fiber degradation. Furthermore, anaerobic fungi have demonstrated significant potential in applications such as silage inoculants, feed microbial preparations, and bioenergy production, including biogas. This review systematically summarizes the taxonomy, life cycle, specialized organelle structures, lignocellulose degradation mechanisms, and application prospects of anaerobic fungi, providing a theoretical basis for the development of efficient biomass degradation strategies and the utilization of feed resources in ruminants.

    Bacteroides Genetic Manipulation Toolbox: From Conventional Methods to the Frontiers of Synthetic Biology
    CHEN Ling-yan, LI Wei-xun, PANG Xin-xin, GAO Xiang, JIAO Xu-yao
    2026, 42(2):  51-64.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1001
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    Bacteroides,as an extremely abundant and functionally important commensal bacterial group in the human gut microbiome, play key roles in nutrient metabolism, immune regulation, and disease development. However, due to its strict anaerobic nature and active restriction-modification systems, genetic manipulation of Bacteroides has long been hampered by limited tools and low efficiency. This article systematically reviews the development of the genetic manipulation toolbox for Bacteroides and summarizes the specific applications of these tools in functional gene validation, metabolic pathway elucidation, and the development of live bacterial therapeutics. The article first outlines the essential components required for genetic manipulation in Bacteroides. It then introduces targeted gene-editing methods, including homologous recombination, CRISPR-Cas systems, and genetic complementation systems. Subsequently, it describes strategies for genome-wide screening of novel functional genes, such as transposon mutagenesis. Through concrete examples, it analyzes the application of these technologies in deciphering the pathogenic mechanisms and metabolic regulatory networks of Bacteroides. Finally, it discusses current challenges and future directions, including multi-site editing and community-level manipulation. This review aims to provide researchers with a systematic and practical set of genetic manipulation strategies to advance in-depth studies of Bacteroides’ functional mechanisms and its applications in the field of synthetic biology.

    Research Progress in Metabolic Engineering for Modification and Syngas-directed Conversion by Acetogenic Clostridium
    LIU Xiu-ping, ZHU Xing-yu, WANG Guang-yi
    2026, 42(2):  65-76.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0283
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    The development of microbial carbon sequestration technology is crucial for curbing global warming. Acetogenic Clostridium can fix one-carbon gases, such as CO2 and CO, and convert them into chemical products, such as ethanol, thereby reducing dependence on fossil fuels, which makes acetogenic Clostridium a promising strain for converting syngas into high-value products on a large scale. This review summarizes the research progress in metabolic engineering modifications of acetogenic Clostridium and the directional conversion of syngas. Firstly, the energy metabolism modes of acetogenic Clostridium are analyzed, and the energy conservation mechanisms of acetogenic Clostridium are elaborated. Then, various tools for genetic manipulation of acetogenic Clostridium are compared and summarized. Finally, the current prospects and challenges in the two major directions of metabolic engineering modification of acetogenic Clostridium are sorted out. In conclusion, this paper summarizes the research progress in metabolic engineering ofacetogenic Clostridium inrecent years, aiming to provide references for more comprehensive understanding of its syngas conversion potential, and promote the development of renewable energy production platform using industrial acetogenic Clostridium.

    Role of Direct Interspecies Electron Transfer in the Methane Production of the Peatland under Warming
    WANG Xue-meng, DONG Xiu-zhu, XUE Kai, LI Ling-yan
    2026, 42(2):  77-88.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1382
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    Objective To explore the role of direct interspecies electron transfer (DIET) mechanisms in methane production from the Zoige peatland on the Qinghai-Tibet Plateau under warming conditions, and to provide DIET-based methane mitigation strategies in peatlands under global warming. Method Soils growing three dominant plant species in the Zoige peatland on the Tibetan Plateau were sampled to construct methanogenic and electrochemical enrichments, which were amended with pectin or cellulose and incubated at 18 ℃. By adding biochar (as an electron transfer shuttle) and electrochemical experiments, the effects of DIET on methane production from plant organic complexes and its response to warming (28 ℃) were investigated. Result The addition of biochar into the soil enrichments elevated methane production from cellulose and pectin by 1.1 to 9.8-fold and increased maximum methanogenic rates by 1.4 to 12.3-fold, and the temperature sensitivity of methanogenesis was doubled following biochar addition. Chronoamperometry detected extracellular electrons generated by soil bacteria in the electrochemically enriched cultures, with a current density of 33.7 μA/cm2, and current consumption coupled methanogenesis by methanogenic archaea (21.2 μA/cm2) in electrochemical enrichments. 16S rRNA gene diversity analysis revealed that biochar selectively enriched the electroactive bacterial family Geobacteraceae, along with methanogenic archaea communities including the families Methanosarcinaceae, Methanomethylophilaceae (electroactive uncharacterized), and the uncultured methanogen group Rice Cluster Ⅱ. Co-occurrence network analysis further indicated significantly positive correlations between Geobacteraceae or Cellulomonadaceae and Rice Cluster Ⅱ, suggesting that they implemented DIET-based conversion of the plant organic complexes to methane. Conclusion DIET plays a main role in methane production from plant organic complexes in Zoige peatland, particularly under the warming scenarios, thereby inhibiting interspecies electron transfer should be considered as one of the key strategies for methane mitigation in peatlands.

    Bioaugmentation Effect of Compound Microbial Consortium on Anaerobic Digestion and Factors Influencing Biogas Yield
    AN Miao-miao, ZHAO Guo-zhu, XU Run, XU Fei, GUO Hui, LI Qiang
    2026, 42(2):  89-101.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0169
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    Objective To obtain an efficient compound microbial consortium, the effects of different bioaugmentation treatments on biogas yield in food waste anaerobic digestion (AD) were investigated to elucidate the mechanisms by which the compound microbial consortium enhances CH4 yield. Method Four treatments were set up for the sequential batch AD experiment: addition of sterile water (CK), inoculation with Methanosarcina barkeri (B), inoculation with enriched methanogenic community (J), and inoculation with constructed microbial consortium comprising M. barkeri and methanogenic community in a 1∶1 based on biomass (BJ). The characteristics of biogas production were analyzed using gas chromatography and the modified Gompertz model. Additionally, a random forest model was utilized to identify the key factors influencing biogas yield. Result The results showed that all bioaugmentation treatments extended the biogas production period and significantly enhanced the biogas production rate, cumulative biogas yield, and CH4 content (P<0.05). Notably, the BJ group showed the most significant improvement. BJ group presented the highest methanogenic potential, followed by J and B groups. Temperature, substrate TS content, pH value, trace elements (TE) concentration, substrate C/N ratio (P<0.01), and inoculation amount of the compound microbial consortium all had significant effects on biogas yield (P<0.05), with temperature exerting the most substantial impact. The locally weighted regression (LOESS) model showed a nonlinear relationship between each factor and biogas yield, with each factor having its optimal range. Conclusion The compound microbial consortium integrated the advantages of the methanogenic community and M. barkeri, balancing functional complexity and stability. This effectively enhanced upstream metabolic processes and methanogenesis, significantly increasing biogas yield and CH4 content in the AD system. By optimizing the bioaugmentation combination and regulating key process parameters, the performance of AD can be effectively improved, promoting waste resource utilization and the sustainable development of energy.

    Study on the Influence and Mechanism of Reflux Ratio on Anaerobic Ammonia Oxidation System
    CHEN Zi-long, ZHANG Chao, HAO Wan-ting, SONG Xian-wei, CHEN Xin-yi, LU Lu, LI Peng-fei, ZHU Yi-chun
    2026, 42(2):  102-112.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0719
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    Objective To explore the effect of reflux ratio on denitrification performance of anaerobic ammonia oxidation system and reveal its mechanism of action. Method Three reflux ratios (0%, 50%, and 100%) were set to determine the denitrification performance, granular sludge characteristics, microbial community structure, and nitrogen metabolism related functional genes of the anaerobic ammonia oxidation system at different reflux ratios. Result When the reflux ratio was 100%, the average total nitrogen removal efficiency and the average NRR (nitrogen removal rate) during the stable phase of the system increased by 9.32% and 36.09 mg/(L‧d), respectively, with more stable nitrogen removal performance. The ratios of ∆NO₂--N/∆NH₄⁺-N and ∆NO₃--N/∆NH₄⁺-N were closer to the theoretical values of anammox. The effluent had a lower oxidation-reduction potential, which improved the oxygen environment in the system. The color of granular sludge was redder, the degree of granulation increased, and the phenomenon of upward floating significantly reduced. The contents of tightly bound polysaccharides and loosely bound polysaccharides within the granules increased by 22.59 and 24.00 mg/g VSS, respectively, forming a more stable shear-resistant structure. The increase of C-O and C=C functional groups on the surface of granular sludge accelerated the electron transfer in the system. High-throughput sequencing showed that Candidatus Brocadia maintained a high relative abundance (38.61%), while the relative abundance of Denitratisoma increased by 4.13%. Meanwhile,nitrogen metabolism-related functional genes narG, napA, narZ and nirS were upregulated Conclusion An appropriate reflux ratio can effectively improve the denitrification performance and operational stability of anaerobic ammonia oxidation systems.

    Short-term Effect of Rare Earth Yttrium on Anaerobic Ammonia Oxidation System and Its Mechanism
    HAO Wan-ting, ZHANG Chao, CHEN Zi-long, SONG Xian-wei, GAO Ming-yuan, ZHU Yu-xi, WANG Shi-hao, ZHU Yi-chun
    2026, 42(2):  113-120.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1129
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    Objective To explore the short-term effect of rare earth yttrium on anaerobic ammonia oxidation system and reveal its short-term mechanism of action. Method We measured the nitrogen removal performance and anaerobic ammonium oxidation activity (SAA) of the anaerobic ammonium oxidation system at different yttrium concentrations (0, 1, 2, 4, 10, 20, 40, and 100 mg/L), conducted a significance analysis of SAA using Origin software, and determined the sludge characteristics and key enzyme activities of the anaerobic ammonium oxidation system at varying yttrium concentrations using scanning electron microscopy-energy dispersive spectroscopy, three-dimensional fluorescence spectroscopy, Fourier transform infrared spectroscopy, Coomassie brilliant blue method, phenol sulfuric acid method and the double-antibody sandwich method. Result When the yttrium concentration is 2 mg/L, the total nitrogen removal rate of the system is the highest, which is 1.98% higher than the control group. Continuing to increase the concentration of yttrium, the total nitrogen removal rate of the system gradually decreases. Low concentration yttrium enhances anaerobic SAA, promotes the secretion of extracellular polymers and the synthesis of cytochrome C, increases the proportion of C, N, P, and Fe elements on the surface of granular sludge, promotes the generation of soluble microbial metabolic byproducts and humic acid substances in TB-EPS, increases the intensity of functional group characteristic peaks related to heavy metal adsorption, and enhances the activity of hydrazine synthase, nitrate reductase, and nitrite reductase. However, high concentrations of yttrium have the opposite effect, while significantly increasing the proportions of phosphorus and yttrium. Yttrium adhered to the granular sludge surface in crystalline form, further promoting the secretion of extracellular polymeric substances, moreover the activities of hydrazine synthase, nitrate reductase, and nitrite reductase remained relatively high. However, the spatial structures of enzymes were disrupted and overall metabolic function was impaired. Conclusion Rare earth yttrium has a short-term “promotion at low concentration and inhibition at high concentration” effect on anaerobic ammonia oxidation systems.

    Host Proteases and Coronavirus Invasion: From S Protein Cleavage Mechanism to Development and Applications of Protease Inhibitor
    JIANG Yi, GAO Ming-yan, ZHANG Di, FU Li-xia, CHENG Xu, CHEN Xiang, GONG Jian-sen, ZHANG Ying, YANG Qin, YU Yan
    2026, 42(2):  121-135.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0826
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    Coronaviruses, a class of RNA viruses, demonstrate a broad host range, infecting various mammals and birds. The process by which these viruses invade host cells is closely associated with the spike (S) protein. This major glycoprotein, located on the surface of the virus, consists of two subunits: S1 and S2. The S1 subunit is responsible for recognizing and binding to the host cell receptor, while the S2 subunit undergoes conformational rearrangement following cleavage by host protease. This rearrangement facilitates the fusion of the virus with cell membrane, thereby enabling invasion. Different coronaviruses feature distinct motifs on their S proteins that serve as recognition sites for various host proteases such as transmembrane serine protease 2 (TMPRSS2), Furin, cathepsin L/B (CTSL/B), and trypsin. The molecular characteristics and activation mechanisms of these protease cleavage sites vary, influencing the virus’s invasion routes and infection efficiency in the host cells. Variations in expressions and activities of host proteases across different tissues or cell types significantly affect the tissue tropism and transmission routes of the virus. Protease inhibitors targeting these host proteases can effectively impede virus invasion and transmission, representing a crucial focus in current anti-coronavirus drug development. This paper systematically reviews the molecular characteristics of key cleavage sites in the S proteins of various coronaviruses, investigates the activation mechanisms of distinct host proteases, and discusses the development strategies for protease inhibitors aimed at these proteases, along with their potential applications in antiviral therapy. By analyzing this critical mechanism, this review aims to offer theoretical support for a deeper comprehension of coronaviruses’ pathogenic mechanisms and to provide a scientific foundation for designing and developing novel antiviral medications.

    Cutting-edge Applications and Advancements of Molecular Simulation in Plant Systems
    QU Hang, ZHANG Zhun, ZHANG Ye-zhuo, LIU Xi-lin, LI Ye
    2026, 42(2):  136-148.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0676
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    With the rapid advancement of computer technology, molecular simulation has demonstrated significant advantages in studying protein interaction mechanisms, transmembrane transport processes, and cell wall formation in plants. Focusing on the cutting-edge application of molecular simulation technology in plant systems in recent years, this review systematically summarizes the cutting-edge research progress of molecular simulation in plant systems. It focuses on the application of molecular dynamics, molecular docking, combined quantum mechanics/molecular mechanics methods and Monte Carlo simulation technology in plant cell walls, cell membranes, protein interactions and medicinal plant development, as well as analyzing and comparing the advantages and disadvantages of each method. Finally, the challenges are prospected while using molecular simulation in the study of plant systems. With the development of related fields such as machine learning, new algorithms and force field development, it is expected to further promote the application of molecular simulation technology in the plant field. This review systematically summarizes molecular simulation technologies in plant system research, aiming to offer innovative methodologies and perspectives for related studies in this field.

    Rapid Detection of Transgenic Maize DBN9501 Event-specificity Based on LAMP-CRISPR-Cas12a Technology
    WANG Jing, LIU Zhuo-yan, ZHANG Xiao-lei, LIU Bao-hai, GUAN Hai-tao, WEN Hong-tao
    2026, 42(2):  149-157.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0974
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    Objective The event specificity is a key focus of transgenic regulation. Currently, laboratory testing remains the primary method for detecting event specificity. Therefore, it is an urgent need to develop a method that can be quickly detected on-site, thus meeting the regulatory needs for genetically modified organisms. Method This study used insect-resistant and herbicide-tolerant transgenic maize DBN9501 as the material, and utilized loop-mediated isothermal amplification (LAMP) combined with CRISPR/Cas12a technology, assisted by a lateral flow test strip display, to develop a rapid detection method suitable for on-site event-specificity. Result This detection method has a detection specificity. The limit of detection is about 20 copies, that is, 0.1% event content, time of detection<60 min. Conclusion The LAMP-CRISPR/Cas method enables the rapid detection of maize DBN9501 event-specificity, providing technical support in supervising the safety of genetically modified organisms in China.

    Screening of Internal Reference Gene for Pholidota chinensis and Their Applications
    LIU Bao-cai, HU Xue-bo, ZHANG Wu-jun, ZHAO Yun-qing, HUANG Ying-zhen, CHEN Jing-ying
    2026, 42(2):  158-168.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0378
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    Objective Pholidota chinensis is a rare and endangered perennial epiphytic medicinal plant of the Orchidaceae family. To study the expressions of functional genes in this species and its closely related species, it is timely to screen for stable housekeeping genes in real-time fluorescent quantitative PCR (RT-qPCR) analysis. Method The RT-qPCR was used to detect the expression of 11 housekeeping genes in different tissues (roots, rhizomes, pseudobulbs, leaves, buds, and flowers) and abiotic stresses (20 mmol/L MeJA sprayed leaves for 24 h and 48 h, 50 mmol/L NaCl sprayed leaves for 24 h and 48 h, and different light intensities) in P. chinensis. The expression stability of 11 candidate internal reference genes was analyzed by geNorm, NormFinder, BestKeeper, ΔCt, and geometric mean values from RefFinder. Result The results revealed single extended bands and peak maps for eleven genes. Although the amplification efficiency and expression abundance of eleven genes met the requirements expected of internal reference genes, the expression stability analysis indicated that Actin/f58p0 was the best internal reference gene for gene expression analysis in different tissues. Conversely, TUA3/f11p0 was favored as the internal reference gene for abiotic stress analysis. The expression trends of key genes involved in gastrodin biosynthesis, namely GT1, GT2, GT3-01, GT3-02, GT4, ADH-01, ADH-02, and ADH-03, were generally consistent across different tissues by using Actin/f58p0 and TUA3/f11p0 as internal reference genes. However, the Actin/f58p0 was more suitable as an internal reference gene for the shikimate O-hydroxycinnamoyltransferase gene (HCT). Under abiotic stress conditions, the TUA3/f11p0 was a better internal reference gene, especially under NaCl and MeJA treatments. However, under light stress, the Actin/f58p0 and TUA3/f11p0 were both as internal references. MeJA had a longer-lasting effect on gene expressions than NaCl. Conclusion This study identifies Actin/f58p0 and TUA3/f11p0 as reliable internal reference genes for analyzing gene expression in different tissues and under abiotic stresses in P. chinensis. These findings lay a foundation for research on functional gene discovery and expression analysis in P. chinensis and related species.

    Phenotypic Analysis and Genetic Mapping of a Rice Floury Endosperm Mutant
    WANG Cheng-cheng, HUANG Tian-yu, ZHANG Qing, SHI Lai-quan, FANG Hui-min, ZHANG Long
    2026, 42(2):  169-177.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0670
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    Objective Rice floury endosperm mutants, which show an opaque endosperm phenotype due to abnormal starch or protein synthesis and accumulation, serve as ideal genetic materials for studying endosperm development and its regulatory networks. This study is aimed to conduct grain phenotypic analysis and mutant gene mapping of the floury endosperm mutant M97. Method The starch granule morphology, starch chain length distribution and physicochemical properties of mutant M97 were analyzed using scanning electron microscopy, fluorescence-assisted capillary electrophoresis, X-ray powder diffractometer, and rapid viscosity analyzer. Additionally, the mutated gene of M97 was identified via the MutMap method combined with SNP/Indel filtering. Result The whole cross-section of Kitaake grain was transparent, and the central area of M97 endosperm showed floury and opaque, and the periphery remained transparent. The grain length, width and thickness of M97 brown rice were significantly lower than those of the wild type, resulting in a decrease in its 100-brown rice weight. Observation via scanning electron microscopy showed that the starch granules in the central area of M97 endosperm were loose with large gaps, while those in the peripheral region were similar to those of the wild type, showing tightly arranged and regular polygonal starch granules. Compared with the wild type, the total starch content of M97 decreased significantly, the soluble sugar content increased significantly, and the apparent amylose content decreased significantly. Both M97 and wild-type starch belonged to A-type crystals, but the relative crystallinity of M97 significantly increased. The starch of M97 showed increased swelling power, decreased water solubility, higher peak viscosity and breakdown values, and lower hot paste viscosity and final viscosity. The mutant gene was mapped to chromosome 2 by the MutMap method. SNP filtering identified a T-to-C substitution in the third exon of the BT1 gene, leading to the substitution of isoleucine (Ile) at position 322 with threonine (Thr). Moreover, the KASP marker verified that this mutation site co-segregated with the floury endosperm phenotype. Homologous protein sequence analysis of BT1 showed that isoleucine was highly conserved across species. Conclusion This study identified a new allelic mutant of the BT1 gene and investigated the effects of a single amino acid substitution on rice endosperm morphology and starch properties, laying a foundation for further study on the mechanism of BT1 participating in regulating rice starch synthesis and providing insights for rice quality improvement.

    Expression Characteristics and Functions of HSFs Transcription Factors Family in Maize under Drought Stress
    ZHANG Dong-ling, ZHANG Yin-sheng, WANG Jian-jun, YE Fei-yu, LU Zi-han, MA Chen-chen, LIU Hua-feng, HU De-sheng, DENG Ya-zhou, CAO Li-ru
    2026, 42(2):  178-187.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0659
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    Objective To identify and analyze the structure and function of HSFs family members in maize (Zea mays L.)under drought stress, laying a foundation for understanding the molecular mechanism of maize drought tolerance. Method Protein sequences were downloaded from the Maize Genome Database (MaizeGDB). Based on the HSF domain of the Pfam database (PF00447), the maize HSFs family members were screened through HMMER 3.0 and BLASTP alignment. Bioinformatics tools such as ExPASy, MEGA X, GSDS, MEME, MCScanX, PlantCARE, and TBtools were used to analyze and predict information such as the physicochemical properties of proteins, chromosome localization, gene structure, collinearity, conserved mosequences, and homeotropic elements. Based on transcriptome data and real-time fluorescence quantitative PCR analysis, the expression patterns of HSFs family member genes under drought stress were revealed and explore HSFs genes that respond to drought stress. Result A total of 28 HSFs genes were identified in maize, with the number of amino acids encoded ranging from 257 to 528 aa and isoelectric points ranging from 4.70 to 9.53. It was unevenly distributed on 10 chromosomes, with the densest distribution on chromosome 1. The promoter region was rich in adverse response elements such as ABRE and MYB. Collinearity analysis showed that there was a strong conservativeness between maize and rice (Oryza sativa). RNA-seq and fluorescence quantitative PCR showed that there were significant differences in four genes. Meanwhile, the overexpression of ZmHSF16 significantly enhanced the drought resistance of Arabidopsis thaliana (survival rate increased by 38%‒43%), and maintained cell homeostasis by reducing cell membrane damage (relative conductivity decreased by 30%). Conclusion The expression characteristics of the ZmHSFs family under drought stress are revealed, and the drought resistance function of ZmHSF16 is verified.

    Effect of Siderophore-producing Bacteria on Peanut in the Calcareous Purple Soil
    HE Qi-lu, TIAN Zhuo, DENG Jing, LI Jun-yang, YANG Wen-lin, LIU Xiang, YU Xiu-mei
    2026, 42(2):  188-196.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0984
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    Objective The low availability of iron (Fe) in calcareous soil leads to the prominent problem of Fe deficiency in plants. The siderophore-producing bacteria can chelate iron in the soil to promote Fe uptake of plants. Whether siderophore-producing bacteria can alleviate the problem of peanut (Arachis hypogaea L.) iron deficiency in calcareous purple soil needs to be investigated. Method Siderophore-producing bacteria were isolated using CAS (Chrome Azurol S) plates and identified by 16S rRNA gene sequencing. The optimal cultivation time for siderophore production, the acid-alkali tolerance and the capacity to secrete siderophore under acid-alkali stress of each strain were determined. Alkali-tolerant strains showing high siderophore yield were selected to inoculate around the peanut rhizosphere in a calcareous purple soil field. Effects of the siderophore-producing bacteria inoculant on peanut Fe content, photosynthesis, growth status and biomass were measured. Result Six siderophore-producing bacteria were isolated from the calcareous purple soil, and their siderophore secretion peaks and corresponding cultivation time were different. The alkali-tolerant and high siderophore-producing bacteria were Pseudomonas B3-10 and B3-2 and Cupriavidus B3-22', and their siderophore peaks respectively reached 290.2, 137.5 and 253.5 mg/L, while the concentrations dropped to 120.1, 66.4 and 86.4 mg/L in the pH 8 medium, respectively, which indicated that the alkaline stress inhibited bacterial siderophore-producing. In calcareous purple soil fields, the three strains of B3-10, B3-2 and B3-22' promoted peanut growth to varying degrees, and increased the underground Fe content, leaf photosynthesis intensity and peanut yield by 69.4%-155.3%, 9.6%-11.9% and 27.5%-52.9%, respectively. B3-10 respectively increased the Fe content in the underground part and aboveground part, and the dry weight of the underground part and aboveground part by 155.3%, 18.8%, 62.1% and 48.1%. Conclusion There are abundant siderophore-producing bacteria in the calcareous purple soil, but the alkaline condition inhibits bacteria producing siderophore. Pseudomonas B3-10 with alkali-tolerance and high siderophore-producing ability shows a significant effect on promoting Fe absorption and increasing production of peanut. It is a good strain for alleviating Fe deficiency symptoms in the calcareous soils. This study provides both theoretical support and microbial resource for enhancing Fe availability in the calcareous purple soil through applying the siderophore-producing bacteria.

    Gene Mapping of Sorghum Flowering Time and Prediction of Candidate Genes Based on BSA-seq
    WANG Shang-feng, CHENG Bin, WANG Ruo-ruo, DING Yan-qing, XU Jian-xia, CAO Ning, GAO Xu, LI Wen-zhen, ZHANG Li-yi
    2026, 42(2):  197-206.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0890
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    Objective Flowering time is a key target trait in sorghum breeding, significantly influencing its ecological adaptability and high-yield potential. Method An F₂ population derived from a cross between the late-flowering variety Hongyingzi and the early-flowering variety SAP001 was used for genetic mapping of flowering time. Result Phenotypic investigation revealed that the segregation ratio of late-flowering and early-flowering plants was consistent with 3∶1(χ2=0.225, P>0.05), indicating that the trait was controlled by a pair of major genes. BSA-Seq analysis of extreme early-and late-flowering lines detected a genetic locus significantly associated with flowering time within the 59.73‒60.44 Mb interval on chromosome 3. By integrating whole-genome resequencing of the parents and transcriptome data, a key candidate gene (SbiHYZ.03G218800), encoding a light-harvesting complex Ⅱ chlorophyll-binding protein, was identified as a putative novel regulator of flowering time in sorghum (Sorghum bicolor (L.)Moench). There were mutations in the binding sites of Myb/SANT and TATA-binding protein (TBP) within its promoter region, and the expression of this gene differed significantly between the parents, possibly it was a new gene regulating flowering time of sorghum. Based on SNP and InDel variations in this candidate region, a closely linked molecular marker effectively distinguishing between early- and late-flowering plants was developed. Conclusion This study preliminarily reveals the genetic basis of flowering time in Chinese liquor-brewing sorghum germplasm and provides valuable genetic resources and molecular markers for molecular breeding of sorghum maturity.

    Genome-wide Identification and Expression Analysis of the BOI Gene Family in Nicotiana benthamiana
    FU Han, SUN Shu-hao, ZHANG Si-qing, AI Niu, YU Yang, YU Lian-wei, WANG Qiong-qiong, HAN Xiao-yu, SHI Yan, HAN Wei-li, YANG Xue
    2026, 42(2):  207-217.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0789
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    Objective To clarify the roles of RING-type ubiquitin E3 ligase Botrytis Susceptible1 Interactor (BOI) in gibberellin (GA) signal transduction and cucumber green mottle mosaic virus (CGMMV) infection, as well as the characteristics of its gene family, thus to provide a theoretical basis for understanding the molecular mechanisms of antiviral defense in Solanaceae crops and their chemical regulation. Method Bioinformatics approaches were used to analyze the phylogenetic relationships, gene structure, conserved motifs, promoter cis-acting elements, transcription factors, and tissue expression characteristics of NbBOI, and fluorescence quantitative PCR was applied to verify the expression changes of NbBOI family members under biotic stress and hormone treatments, and yeast two-hybrid assay was employed to screen out the BOI family genes that interacted with CGMMV encoded proteins. Result A total of thirteen BOI genes were identified in Nicotiana benthamiana, and they were divided into four subfamilies. The Motifs and gene structures of BOI family members in the same evolutionary branch were highly consistent. Six genes related to the gibberellin pathway were identified through prediction and promoter cis-acting elements analysis. Fluorescence quantitative PCR detection showed that members of the NbBOI family had differences in tissue-specific expression patterns and revealed different response patterns to virus infection and gibberellin treatment. The yeast two-hybrid assay verified that NbBRG2.1 interacted with the coat protein (CP) and movement protein encoded by CGMMV. Conclusion The BOI gene family in N. benthamiana shows high conservation and is involved in plant biotic stress defense and hormone signal transduction. Among its members, NbBRG1.2 plays a crucial role in the gibberellin (GA) biosynthesis pathway, while NbBOI.1, NbBOI.2, NbBOI.3, NbBRG1.2, NbBRG2.1, and NbBRG2.3 play a certain role in the defense mechanism of plants against CGMMV infection. During the viral infection process, viral proteins hijack the NbBRG2.1, thereby disrupting the hormonal balance in the host.

    Cloning and Functional Analysis of Tobacco Polyphenol Oxidase NtPPO1-2 Gene
    LIU Meng-ru, XIA Lin, LIU Rui-xia, YAN Xin-ke, YANG Jun, ZHANG Jing-hua, WU Ming-zhu
    2026, 42(2):  218-227.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0456
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    Objective Polyphenol oxidase (PPO), a copper-binding enzyme, plays a significant role in plant growth, development, and defense against biotic and abiotic stresses. This study is aimed to clone and functionally analyze the NtPPO1-2 gene from cultivated tobacco (Nicotiana tabacum L.) K326 to lay the foundation for understanding polyphenol metabolism regulatory mechanisms in tobacco. Method Using cultivated tobacco K326 as the material, a novel PPO gene NtPPO1-2 was obtained through homologous cloning. Bioinformatics and gene expression analyses were performed. An overexpression vector was constructed, and transgenic plants were generated via Agrobacterium-mediated transformation. Phenotypic observations of the T1 generation, PPO enzyme activity assays, and quantification of chlorogenic acid and rutin contents were conducted. Result The full-length of NtPPO1-2 is 1 821 bp, encoding 606 amino acids. Amino acid sequence alignment and domain analysis revealed that NtPPO1-2 shares the highest amino acid similarity with NsylPPO from Nicotiana sylvestris and contains conserved tyrosinase, PPO1_DWL, and PPO1_KFDV domains. The phenotype of the NtPPO1-2 T1 overexpressing plants shows a reduced number of flower buds compared to the cultivated tobacco variety K326. Additionally, PPO enzyme activity was significantly elevated in overexpression plants, while the contents of major phenolic compounds, chlorogenic acid and rutin, were markedly reduced. Conclusion The NtPPO1-2 gene is successfully cloned from cultivated tobacco K326. Its overexpression significantly enhances PPO activity, reduces chlorogenic acid and rutin levels, and alteres plant phenotypes.

    Physiological Response and Transcriptome Analysis of Tobacco Yunongxiang 201 to Low Temperature Stress
    WANG Ya-le, LI Xue-jun, SUN Ji-ping, SUN Huan
    2026, 42(2):  228-238.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0579
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    Objective Yunongxiang 201 is a new flue-cured tobacco variety by self-crossing six generations, which was selected from the Zhongyan 100 0.6% EMS mutant library, with good resistance diseases and elite tobacco quality, whereas, it in field showed low-temperature sensitivity and early flowering characteristics. The molecular mechanism formed by low-temperature sensitivity of Yunongxiang 201 was studied. Method Yunongxiang 201 and Zhongyan 100 were used as test materials, their growth status was observed under 4 ℃ stress for 0 h, 6 h and 24 h. The physiological indexes of H2O2 content, proline content, antioxidant enzyme activity and endogenous ABA content was determined, and the growth status of plants recovered at 25 ℃ for 15 d was observed. The molecular mechanism was explored by combining transcriptomics. Result Compared with Zhongyan 100, Yunongxiang 201 wilted seriously at 4 ℃ for 24 h. Encountering low temperature, the H2O2 content, proline content, SOD and POD antioxidant enzymes in Zhongyan 100 increased significantly, and the content of endogenous ABA increased significantly under continuous low temperature; interestingly, the content of H2O2 in Yunongxiang 201 increased significantly, the content of proline, SOD and POD antioxidant enzymes didn’t increase significantly, and the content of endogenous ABA decreased significantly. The number of differential expressed genes (DEGs) involved in low- temperature-response of Zhongyan 100 and Yunongxiang 201 respectively were 4 314 and 3 769 at 6 h; Zhongyan 100 and Yunongxiang 201 respectively were 17 618 and 14 293 at 24 h. KEGG enrichment showed that the number of DEGs involved in starch-sucrose metabolism pathway was similar in the two varieties, Zhongyan 100's DEGs were more involved in plant hormone transduction pathway, and Yunongxiang 201’s DEGs were more involved in plant-circadian rhythm pathway under cold stress. After encountering low temperature, the expressions of soluble sugar related genes SUS, TPP, α-amylasegene AMY3, as well as ABA pathway-related genes SRK2E, SAPK3 were up-regulated in Zhongyan 100, which was conducive to enhancing cold resistance. The expressions of flowering pathway-related genes ELF3, FLK, cold-regulating gene COR27, constitutive photomorphogenic1 gene COP1 and CBF negative regulator EIN3 in Yunongxiang 201 was up-regulated. Conclusion After low temperature, the broad and complex cold-resistant defense pathway of Zhongyan 100 is activated, while the antioxidant enzyme system is insufficiently regulated, thus the ROS scavenging system were weakened, resulting in the more sensitive of Yunongxiang 201 to low temperature.

    Construction of Alfalfa Yeast Expression Library and Screening and Identification of Salt-tolerance Genes
    ZHANG Chi-hao, LIU Jin-nan, DONG Jia-le, CHAO Yue-hui
    2026, 42(2):  239-249.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0844
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    Objective To construct a cDNA library of salt-induced genes in alfalfa (Medicago sativa ), screen the candidate salt-tolerant genes and verify it. Method Alfalfa seedlings were treated with 1% NaCl, after which plant materials were collected and total RNA was extracted. Following reverse transcription, a yeast cDNA expression library was constructed. The library plasmids and the empty plasmids (pYES2-NTB) were transformed into yeast strains to determine the NaCl concentration for library screening and to identify candidate salt-tolerant genes. A total of 196 single yeast colonies were selected for salt-tolerance assays, followed by PCR identification and sequencing analysis. Four of the candidate genes were chosen for transgenic functional analysis. Result High-quality RNA was obtained, and a cDNA library of salt-induced gene expression in alfalfa was successfully established. The library capacity was 7.68×107 CFU/mL and the total number of clones is 1.536×108 CFU. The cDNA library and blank plasmid were transferred into the yeast strain INVSC1. The monoclonal yeast colonies still survived in the library culture medium under SG/-Ura+1.5 mol/L NaCl, while that in the control group no longer survived on 1.3 mol/L NaCl culture medium. After sequence alignment, 75 different genes were identified, the four candidate salt-tolerant genes were screened out, Msa1025270, Msa0320180, Msa0819320, and Msa0859120. Through the NCBI website, it was found that the functions of these four genes were related to proteins such as abscisic acid receptors, response to ABA, abscisic acid and environmental stress induction, and early dehydration response. The results of transgenic functional identification showed that the expressions of the four candidate genes significantly enhanced the resistance of plants to NaCl. Conclusion The library bacterial liquid has good salt resistance, and the verified results of salt-tolerant gene transgenic plants show that the four gene Msa1025270, Msa0320180, Msa0819320, and Msa0859120 have the function related to salt-tolerance.

    Genome-wide Identification and Expression Analysis of the SMXL Gene Family in Medicago truncatula
    ZHUANG Na, HE Hong-li, ZHANG Xing-zheng
    2026, 42(2):  250-266.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0481
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    Objective SMXLs (SUPPRESSOR of MAX2 1-LIKE) are key repressors in the signal transduction pathway of the important plant hormone strigolactones (SLs) and major components of the karrikin (KARs) signaling pathway. The genome-wide identification of SMXL gene family members in Medicago truncatula and analysis of their expression pattern changes under abiotic stresses were conducted to provide theoretical support for the study of related gene families in legumes and lay a foundation for in-depth research on the functions of MtSMXL genes in the future. Method Employing bioinformatics methods, based on the reported amino acid sequences encoded by the SMXL family in plants, the genome-wide identification of SMXL family members in M. truncatula was performed. Tools such as TBtools were used for evolutionary and functional analyses of MtSMXL members. Meanwhile, transcriptome data were utilized to analyze the expressions of these members in different tissues, as well as their expressions under nutrient deficiency stress treatments (potassium, nitrogen, phosphorus, and sulfur deficiency) and abiotic stress treatments (cold,drought,and high salt). Result Through evolutionary analysis, a total of 17 MtSMXL members were identified. They were divided into three groups (G1-G3) with reference to gene structure and conserved domains. The upstream promoter regions of MtSMXLs contained a variety of cis-acting elements involved in responding to plant hormones and abiotic stresses, with differences in the type and number of these elements among different members. Synteny analysis revealed that WGD events in legumes play a crucial role in the expansion of the MtSMXL gene family. Significant differences were observed in the expression patterns of family members across different tissues and in response to various stresses. Functional candidate genes involved in responses to various stresses were selected through analysis. Conclusion Different groups of SMXL genes in M. truncatula present significant differences in structure and function during evolution, and the expression patterns of members vary under different stresses. Among them, MtSMXL2/7/11 can be used for the study of K/N/S/P element deficiency stress response pathways, while MtSMXL7/8/13/14/16 can be applied to the studies on the response pathways to drought, cold, and high salt stress.

    Identification of the EfBBX Gene Family in Erianthus fulvus and Analysis of Its Expression Patterns Under Cold Stress
    NONG Wei-you, ZHAO Chang-zu, QIAN Zhen-feng, DING Qian, WANG Yu-jie, CHEN Shu-ying, HE Li-lian, LI Fu-sheng
    2026, 42(2):  267-277.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0908
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    Objective B-box zinc finger proteins (BBX proteins) play a crucial role in defending plants against abiotic stress. Erianthus fulvus has excellent cold tolerance and serves as a valuable genetic resource for improving cold resistance in sugarcane. We identified and characterized members of the EfBBX gene family in E. fulvus, and explored their biological functions under cold stress. Method Members of the EfBBX gene family were identified from the whole genome of E. fulvus. Bioinformatics methods were employed to analyze their physicochemical properties, phylogenetic relationships, chromosomal localization, synteny analysis, gene structure, conserved domains, and promoter cis-elements. RT-qPCR experiments were conducted to examine the expression patterns of EfBBX family members under cold stress. Using the E. fulvus clonal line E2 as material, the coding sequences (CDS) of EfBBX4, EfBBX10, and EfBBX18 were cloned. The EfBBX18 gene was then transiently expressed in Nicotiana benthamiana. Result Nineteen members of the EfBBX gene family were identified in the whole genome of E. fulvus, classified into five subfamilies and unevenly distributed across six of its ten chromosomes. Subcellular localization predictions indicated that EfBBX proteins were primarily localized in the nucleus and chloroplasts. The promoter regions of the EfBBX gene family contain numerous elements associated with hormone, abiotic stress response, and light response pathways. RT-qPCR experiments confirmed that ten genes were induced by cold stress. The EfBBX4, EfBBX10, and EfBBX18 genes were successfully cloned, and transient expression of E. fulvusEfBBX18 in Nicotiana benthamiana enhanced the plant’s cold tolerance. Conclusion Nineteen EfBBX genes are identified from the E. fulvus genome, with ten genes inducible by cold stress. Three of these genes are successfully cloned, and transient expression of EfBBX18 in N. benthamiana enhances the plant’s tolerance to cold.

    Identification and Expression Analysis of the RALF Gene Family in Panax notoginseng
    YANG Zi-han, LI Kui-xiu, LI Jun-liang, LYU Wen-hui, HE Wen-ting, LIU Xu-yan, LIU Guan-ze
    2026, 42(2):  278-292.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0585
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    Objective Rapid alkalinization factors (RALFs) are plant peptide hormones that participate in immune responses. This study is aimed to identify the RALF gene family members in Panax notoginseng and to investigate the roles of PnoRALFs in P. notoginseng immune responses. Method The RALF gene family in P. notoginseng was identified using bioinformatics tools. Chromosomal localization, protein physicochemical properties, phylogenetic relationships, conserved motifs, gene structures, promoter cis-acting elements, and tissue-specific expression patterns were analyzed. Expression profiles were assessed under four hormone treatments-salicylic acid (SA), methyl jasmonate (MeJA), abscisic acid (ABA), and ethylene (ETH) and after infection with C. destructans. The function of a key gene was further validated through transient expression in Nicotiana benthamiana. Result Thirteen PnoRALFs genes were identified and mapped to eight chromosomes. These genes were classified into two subgroups. Conserved motif analysis showed the presence of RRXL and YISY motifs. Promoter regions contained multiple hormone-responsive cis-elements, including those responsive to ABA, MeJA, SA, and gibberellins (GA). Tissue-specific expression analysis revealed considerable variation in gene expressions among different tissues. The expressions of PnoRALF2, PnoRALF5, PnoRALF6, and PnoRALF9 were upregulated by hormone treatments. Transcriptome and RT-qPCR analyses indicated that nine PnoRALFs genes responded to C. destructans infection, with PnoRALF9 showing a marked increase in expression. Transient overexpression of PnoRALF9 in N. benthamiana increased the expressions of immunity-related genes such as NbFPK1 and NbWRKY29 in the pattern-triggered immunity (PTI) pathway and NbMPK6 and NbGAPDH in the reactive oxygen species (ROS) signaling pathway. Conclusion Thirteen PnoRALFs genes are identified in the P. notoginseng genome. Among them, PnoRALF9 responds to multiple hormone treatments and C. destructans infection. Transient overexpression of PnoRALF9 induces plant immunity-related gene expression, suggesting that PnoRALF9 plays a critical role in the immune response in P. notoginseng to disease.

    Identification and Functional Characterization of the 4-Coumarate∶coenzyme A Ligase Gene Family in Angelica sinensis (Oliv.) Diels
    LI Le-song, ZHANG Jin-jin, HE Jia-die, LIANG Yan-li, YANG Sheng-chao, LI Meng-fei, ZHAO Yan
    2026, 42(2):  293-305.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0417
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    Objective Exploring the role of 4-coumarate: coenzyme A ligase (4CL) in lignin biosynthesis in the roots of Angelica sinensis (Oliv.) Diels, laying the foundation for targeted regulation of A. sinensis medicinal quality through genetic improvement or cultivation methods. Method The 4CL gene family of A. sinensis was identified using bioinformatics methods. The analysis on protein physicochemical properties, secondary structure prediction, gene structure, promoter cis-acting elements, and systematic evolution were conducted. The gene function was verified through heterologous expression in Escherichia coli and enzymatic assay in vitro, and its expression characteristics were analyzed by real-time quantitative PCR. Result A total of 12 As4CLs were identified in the genome of A. sinensis, encoding 415‒572 amino acids, relative molecular weights ranging from 45 to 62 kD, and isoelectric points ranging from 5.47 to 9.06. The secondary structure is mainly composed of irregular coils and α-helices. System evolution analysis categorizes As4CL6 and As4CL7 as Group I, while the remaining As4CLs belong to Group Ⅲ. The amino acid sequence alignment results showed that As4CLs contain two functionally conserved domains, Box I and Box Ⅱ. Promoter analysis showed that the As4CLs contain abundant light responsive elements, hormone responsive elements, and abiotic stress responsive elements. In vitro enzymatic assay showed that both As4CL6 and As4CL7 catalyzed 4-coumaric acid, caffeic acid, and ferulic acid to form corresponding coenzyme A thioesters, and both enzymes have the strongest affinity for ferulic acid. The RT-qPCR results showed that the expressions of As4CL6 and As4CL7 were higher in the roots of A. sinensis with bolting than in the roots unbolting. Conclusion The genes of As4CL6 and As4CL7 are successfully cloned, and enzymatic assay in vitro confirm that the two recombinant proteins demonstrate catalytic activity towards three substrates.

    Cloning and Salt-drought Tolerance Analysis of MnDREB6E Gene in Mulberry
    DONG Ya-ru, ZHU Hong, WANG Zhao-hong, ZHAO Dong-xiao, LIU Hui-fen
    2026, 42(2):  306-316.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0705
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    Objective To elucidate the biological function of MnDREB6E, a member of the DREB transcription factor family in mulberry, and clarify its mechanism of action in response to abiotic stresses, thereby providing critical genetic resources for molecular breeding of stress-tolerant woody plants. Method MnDREB6E was cloned from salt-stressed mulberry using transcriptomic data. Bioinformatics tools were employed to analyze its sequence characteristics and phylogenetic relationships. Cis-acting elements were validated using yeast one-hybrid assays. Overexpression and RNAi-mediated suppression vectors were constructed and transiently transformed into mulberry via Agrobacterium-mediated transformation. Physiological and biochemical parameters as well as the antioxidant gene expression were measured under salt/drought stress. Result MnDREB6E contains a 1 173 bp ORF encoding 390 amino acids with a conserved AP2/ERF domain, classifying it into the DREB A6 subgroup. Its subcellular localization was predicted to be in the nucleus and specifically bound to GCC-box/DRE cis-elements. Under salt/drought stress, the activities of superoxide dismutase (SOD), catalase (CAT), peroxidase (POD), and glutathione S-transferase (GST) in the overexpressed plants were significantly enhanced. The contents of ascorbic acid (AsA), reduced glutathione (GSH), and proline increased, while the levels of reactive oxygen species (ROS), including superoxide anion (O2•-), hydrogen peroxide (H2O2), and hydroxyl radical (•OH) decreased. Additionally, the relative electrolyte leakage and malondialdehyde (MDA) content were reduced, and the expressions of antioxidant-related genes was significantly upregulated. Conclusion MnDREB6E coordinately regulates antioxidant metabolism and osmoprotection pathways, enhancing mulberry tolerance to salt/drought stress.

    Preparation of NCAPG Knockout Bovine Fibroblast Cell Lines Using CRISPR/Cas9 Technology
    WANG Ting-ting, HE Meng-ya, SHENG Jia-shun, GAO Chen, CAI Han-fang, FU Tong, SUN Yu, GAO Teng-yun, ZHANG Tian-liu
    2026, 42(2):  317-324.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0792
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    Objective This study employed CRISPR/Cas9 technology to establish a bovine fetal fibroblast cell model with knockout of the NCAPG gene and to investigate the impact of NCAPG deficiency on cell viability. Method A specific sgRNA targeting exon 6 of the bovine NCAPG transcript was designed. The sgRNA was complexed with SpCas9 protein to form a ribonucleoprotein (RNP) complex, which was subsequently introduced into bovine fetal fibroblasts with electroporation. Following transfection, single-cell clones were isolated and expanded using the ClonePlus™ technique. Putative knockout monoclonal cell lines were identified by PCR amplification and sequencing. Result ICE software analysis indicated a knockout efficiency of sgRNA reached 49%. TA cloning and sequencing confirmed that the monoclonal cells were heterozygous knockouts, carrying a 5 bp deletion at the target site. Western blot analysis revealed a highly significant reduction in NCAPG protein expression in the knockout cells compared to wild-type controls (P<0.01). CCK-8 cell viability assays revealed that NCAPG knockout significantly inhibited cell proliferation (P<0.01), as evidenced by a markedly reduced growth rate. Conclusion An efficient CRISPR/Cas9-mediated NCAPG knockout method was successfully established in bovine fetal fibroblasts, and NCAPG deficiency was found to significantly suppress cell viability. This work provides crucial experimental resources for further investigation into the function and molecular mechanisms of the bovine NCAPG gene.

    A Comparative Study of Metabolomics-based Screening of Differential Metabolites for Fat Deposition in Wuzhishan and DLY Pigs
    WANG Ya-nan, WEI Li-min, WANG Feng, CHAO Zhe, REN Yu-wei, LIU Hai-long, HUANG Li-li, SUN Rui-ping
    2026, 42(2):  325-337.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0646
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    Objective To investigate the characteristics of differential metabolites in serum and subcutaneous fat between Wuzhishan pigs and DLY commercial pigs, and to screen for biomarkers associated with fat deposition. Method Twelve pigs of different breeds that were healthy and met market requirements were selected from commercial pig farms, including 6 Wuzhishan pigs (W) and 6 Duroc-Landrace-Yorkshire (DLY) pigs (C). After slaughter, serum and subcutaneous fat samples were collected. Non-targeted metabolomics technology was used to detect metabolic profiles, and KEGG database was combined for enrichment analysis of differential metabolites and related pathways. Result 1) The contents of LDL-C, BUN, and CREA in the serum of Wuzhishan pigs were extremely significantly lower than those in DLY pigs (P<0.01), and the LDH significantly reduced (P<0.05). 2) The results of fat HE staining showed that the area and diameter of adipocytes in Wuzhishan pigs were significantly larger than those in DLY pigs (P<0.05), but the adipocyte density and the number of cells per unit area were significantly lower than those in DLY pigs (P<0.05). 3) Serum metabolomics screening identified 107 up-regulated and 120 down-regulated differential metabolites. A total of 227 differential metabolites were imported into the KEGG database for functional enrichment analysis, and 26 metabolic pathways were enriched. The pathway most significantly associated with growth metabolism and having the highest enrichment score is glycosylphosphatidylinositol (GPI) anchor biosynthesis. 4) In sebum metabolomics, 45 up-regulated and 110 down-regulated differential metabolites were screened, and 29 metabolic pathways were enriched in total. The significantly enriched pathways are PPAR signaling pathway and insulin resistance. Conclusion These results indicate that Wuzhishan pigs have weaker lipid deposition capacity. Metabolites such as PA, PC and PE in serum, as well as DL-homocysteine and oleic acid in subcutaneous fat, may serve as potential biomarkers for lipid deposition. Key pathways, including glycerophospholipid metabolism, GPI anchor biosynthesis, and PPAR signaling, likely regulate the differences in fat metabolism between the two pig breeds. The synergistic and differential regulation of serum and sebum metabolites in fat deposition provides an important theoretical basis for lipid metabolism breeding and meat quality improvement in pigs.

    Regulatory Roles of Transcription Factor AOL-113 in Mycelial Growth, Stress Response, and Predatory Ability of Arthrobotrys oligospora
    SUN Yan-sen, WEI Li-xiang, LI Ruo-bing, ZHANG Cheng-zhi, NIE Yu-hang, LI Jie, CAI Xue-peng, QIAO Jun, MENG Qing-ling
    2026, 42(2):  338-350.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0603
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    Objective To investigate the biological function of the Zn(II)₂Cys₆-type transcription factor AOL-113 of Arthrobotrys oligospora. Method The ΔAOL-113 deletion strain and the CΔAOL-113 complementary strain were constructed by homologous recombination, and the phenotypes such as mycelial growth, nutrient utilization, environmental adaptability, conidial production and germination, as well as nematode-trapping efficiency were subsequently analyzed. Additionally, transcriptome analysis was conducted to identify differentially expressed genes between the WT strain and the ΔAOL-113 deletion strain under sodium acetate conditions. Result The transcription factor AOL-113 gene encoded GAL4 zinc finger protein and shared high homology with the transcription factor FacB. Compared to the wild-type (WT) strain, the ∆AOL-113 strain presented significantly reduced growth rates and a marked decrease in carbon source utilization, especially fatty acid metabolism. It is more sensitive to oxidative stress agents such as H2O2 and menadione. The ∆AOL-113 strain also showed diminished trap production and a lower rate of sticky network formation, which significantly impaired its ability to degrade and digest nematodes. The complementary strain showed no significant phenotypic differences compared to the WT strain. Transcriptome analysis further revealed that the deletion of the AOL-113 led to the down-regulation of key genes involved in multiple pathways such as oxidative phosphorylation, lipid metabolism, glyoxylate cycle, peroxisome function, galactose metabolism, and glycolysis, this affected multiple biological processes such as mycelial growth, carbon source utilization, stress resistance, and predation ability. Conclusion The transcription factor AOL-113 not only provides energy support for hyphal growth and trap formation by regulating cellular metabolism (especially acetic acid metabolism and fatty acid β-oxidation), but also participates in regulating the efficiency of nematode predation and digestion, providing new ideas for revealing the molecular mechanism of the transition of A. oligosporus from a saprophytic to a parasitic lifestyle and the development of biocontrol agents for livestock nematode diseases.

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    2026, 42(2):  1. 
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    2026, 42(2):  1. 
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