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    Antioxidant Activity of Solvent Extracts of Xinjiang Propolis and Determination of Quercetin and Chrysin Propolis
    Buwihelqem Ababekri, Mutallip Amet Aminigul, Mamat Nizam Ehet, Yimit Rahman
    Biotechnology Bulletin    2013, 0 (2): 163-171.  
    Abstract623)      PDF(pc) (2778KB)(50242)       Save
    To study the DPPH free radical scavenging activity and anti-lipid peroxidation activity of Kuqa and Yili, and determine the content of the Quercetin and Chrysin in Xinjiang Yili propolis. Different extracts of raw propolis were extracted by four kinds of solvents, taking tea polyphenol as comparison; measure Kuqa and Yili, Xinjiang propolis extracts antioxidant activity in removal of DPPH(1, 1-Diphenyl- 1-picrylhydrazyl)free radicals and antioxidant properties of linoleic acid peroxidation. With 70% ethanol and methanol as solvent to extract Quercetin and Chrysin from Xinjiang Yili propolis, using HPLC(high performance liquid chromatography)to determine the content of the extracted Quercetin and Chrysin, the detection wavelength was 370 nm and 268 nm, respectively. Result showed that propolis different extracts in different concentrations has different scavenging free radical DPPH capacity, in partial experimental groups’ scavenging capacity is even surpassed to same concentration of tea polyphenol group; has antioxidant activity to linoleic acid, in which Yili propolis has higher antiperoxidation activity. The content of Quercetin was the lowest in the without defatted ethanol extracts(2.2950 mg/g), the highest in the defatted methanol extracts(2.8150 mg/g);The content of Chrysin was the lowest in the without defatted methanol extracts(60.72 mg/g), the highest in the defatted methanol extracts(74.37 mg/g). The Kuqa and Yili propolis has a certain extent of antioxidant capacity, this DPPH method is fast, sensitive and simple, this results showed that the Xinjiang propolis is a natural antioxidant, and waiting for further study and utilization; HPLC analysis showed that Quercetin and Chrysin the active ingredients of propolis samples from Xinjiang Yili were detected.
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    Research Progress of Structural Characteristics and Functions of Calcium-dependent Protein Kinases in Plants
    Jiang Shanshan, Zhang Dan, Kong Xiangpei, Zhou Yan, Li Dequan
    Biotechnology Bulletin    2013, 0 (6): 12-19.  
    Abstract634)      PDF(pc) (1634KB)(11354)       Save
    The calcium ion(Ca2+)is known as a key second messenger in plants, intracellular Ca2+ signals are relayed to downstream(transcription factors, NADPH oxidases genes)via different calcium sensor proteins(CaMs, CaMLs, CBLs, CDPKs), which further causes expression of related genes and responses to abiotic and biotic stresses. Calcium-dependent protein kinases(CDPKs)which are Ser/The protein kinases found in plants and some protozoa, play crucial roles in Ca2+-mediated signaling pathways. CDPKs are encoded by multigene families and are divided into four subgroups. CDPKs exhibit overlapping and distinct expression patterns, sub-cellular localizations, substrate specificities and redundancy and/or diversity functions. Here we review the recent advances on the structural characteristics, expression patterns, localizations, regulations substrates both in vivo and in vitro, inhibitors and functions in response to abiotic and biotic stresses of CDPKs in order to shed light on the functions and regulatory mechanisms.
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    Molecular Design of Ideal Plant Architecture for High-density Tolerance of Maize Plant
    WANG Bao-bao, WANG Hai-yang
    Biotechnology Bulletin    2023, 39 (8): 11-30.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-0660
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    Maize(Zea mays L.)is the most productive grain crop in the world. Sufficient and stable production of maize is of great importance for ensuring worldwide food security. Long-term studies and maize production practice have shown that increasing density tolerance and planting density of maize varieties is crucial for increasing its yield, and breeding an ideal plant architecture is an important way to improve maize density tolerance. Previous reports indicate that more erected leaf angle, lower ear height, fewer tassel branches, and earlier flowering were important components of ideal plant architecture of maize for adapting to high-density planting. Hereby we intend to summarize the research progress in their relationship of four morphological traits with high-density tolerance, their morphological development, and genetic regulation. We also propose several directions for further research on improving density tolerant plant architecture in maize, aiming to provide some useful references for future breeding high-density tolerant maize.

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    The Cancer-related Bioinformatics Databases
    Yang Jian, Cai Haoyang
    Biotechnology Bulletin    2015, 31 (11): 89-101.   DOI: 10.13560/j.cnki.biotech.bull.1985.2015.11.010
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    Malignant tumor has become one of the major diseases that takes seriously risks to human health. In recent years, the rapid development of high-throughput detection technology has become an important means in cancer research. In this way, the cancer genomics data accumulated rapidly. These data is important for the research of mechanisms of tumor initiation and development. Massive biological data management and mining have become the foundation and an important field in cancer research. This article describes the frequently used bioinformatics databases of human tumors, including comprehensive databases, databases of genomics, transcriptomics, proteomics, epigenetics, etc. Here we sum up the status quo of database development in China and abroad, and discuss the existing problems to assist current research.
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    Research Advances in the Enhancement of Microbial Tolerance to Acid Stress
    HU Jin-chao, SHEN Wen-qi, XU Chao-ye, FAN Ya-qi, LU Hao-yu, JIANG Wen-jie, LI Shi-long, JIN Hong-chen, LUO Jian-mei, WANG Min
    Biotechnology Bulletin    2023, 39 (11): 137-149.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-0686
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    Microorganisms are often exposed to accumulation of various acidic substances during the fermentation process, which can seriously inhibit fermentation activity and production performance of the strains. Therefore, microorganisms have formed complex response mechanisms for the adaptation of low pH stress by coordinating cellular multiple physiological systems, metabolic pathways and regulatory network during the long-term evolution. The acid tolerance enhancement of the industrial microorganisms is a key way to improve its production efficiency. This review summarizes the recent research advances in the improvement on cell resistance to acids by the adaptive laboratory evolution, pre-adaptation, genome shuffling, genetic engineering, the global transcription machinery engineering, system biology and synthetic biology. The challenges and outlook of the relevant research are also discussed.

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    Research Progress in the Regulation of Chlorogenic Acid Biosynthesis and Its Application
    CHEN Zhi-min, LI Cui, WEI Ji-tian, LI Xin-ran, LIU Yi, GUO Qiang
    Biotechnology Bulletin    2024, 40 (1): 57-71.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-0728
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    Chlorogenic acid(CGA)is an important phenolic acid secondary metabolite widely found in plant kingdom. CGA plays an important role in plant growth and development, resistance to biotic and abiotic stresses. In addition, it has a multiple biological activities and pharmacological functions, and plays an important role in application potential in anti-inflammatory, antibacterial and hypoglycemic. However, the content of CGA is usually very low in plants, which seriously restricts its development and utilization values. Therefore, effectively improving CGA content in plants is particularly crucial. Recently, many researchers have made important advances on improving the CGA content in plants by genetic engineering, stress and hormone treatment. On this basis, researchers have also initiated new explorations on the biosynthesis of CGA and its molecular mechanism. This would provide new ideas for improving the CGA content in plants. In view of this, this paper reviews the research progresses on the structure and function, biosynthesis and regulation of CGA, and systematically analyzes the effects of key rate-limiting enzymes, such as PAL, C4H and 4CL, is involved in the synthesis of CGA. Moreover, we elucidate the role of transcription factors MYB, WRKY and bHLH in regulating the biosynthesis of CGA. Meanwhile, we comprehensively summarize the effects of exogenous factors, e.g., biotic/abiotic stresses, plant hormones, light quality and photoperiod on the CGA content and biosynthesis in plants,and introduce the mechanism of CGA in improving animal and human health. Finally, we explore and prospect the unsolved problems and future research directions in the CGA. It is aimed to offer some valuable references for the rational development and utilization of CGA and the improvement of crop resistance.

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    Research Progress in the Effects of Ubiquitin-proteasome System on Plant Agronomic Traits
    WANG Cui-cui, FU Da-qi
    Biotechnology Bulletin    2023, 39 (1): 72-83.   DOI: 10.13560/j.cnki.biotech.bull.1985.2022-0160
    Abstract577)   HTML25)    PDF(pc) (1151KB)(9040)       Save

    At present, problems such as population explosion, environmental pollution and ecological destruction emerge one after another. Improving agronomic traits, such as increasing yield and enhancing stress tolerance, is the most important goal of crop genetic improvement and the basis of promoting high-quality agricultural development. The ubiquitin-proteasome system(UPS)is a rapid and selective system for the hydrolysis of redundant and damaged proteins produced by plant. Now, studies have found that the ubiquitin-proteasome system affects plant development, reproduction, and important agronomic traits, such as pathogen responses, induction of flowering, seed size, and so on. This review focuses on recent studies illustrating the important functions of the UPS components and subunits of the proteasome and describes how the UPS affect plant agronomic traits. Finally, the review discusses the future research hotspots and the potential for crop improvement with UPS.

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    Advances in the Mechanism of Pepper in the Response to Heat Stress
    ZHANG Bei, REN Fu-sen, ZHAO Yang, GUO Zhi-wei, SUN Qiang, LIU He-juan, ZHEN Jun-qi, WANG Tong-tong, CHENG Xiang-jie
    Biotechnology Bulletin    2023, 39 (7): 37-47.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-0132
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    Pepper is an important vegetable crop and condiment, rich in nutrients. However, high temperature restricts the growth and development of pepper, seriously affects its yield and quality. Therefore, it is of great significance to study the response mechanism of heat stress to cultivate pepper varieties with strong heat resistance. Based on the physiological and biochemical, molecular, and omics mechanism, this review summarizes the recent advances in heat-response regulation mechanisms in pepper. Furthermore, the existing problems in current researches are pointed out and the key points in future studies are also proposed, aiming to promote the analysis of pepper heat+resistant mechanism and heat-resistant variety breeding process.

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    Transcriptome and RNA-Seq Technology
    Zhang Chunlan, Qin Zijuan, Wang Guizhi, Ji Zhibin, Wang Jianmin
    Biotechnology Bulletin    2012, 0 (12): 51-56.  
    Abstract1449)      PDF(pc) (1420KB)(8653)       Save
    The transcriptome is the complete set of transcripts for certain type of cells or tissues in a specific developmental stage orphysiological condition. Transcriptome analysis can reveal the organism's gene expressing level, structural variation, discovery of new genes. Theresearch methods and platforms of transcriptome are undergoing rapid changes. And bioinformatics analysis is also improved gradually. RNASeqas a new research method, it can be more quickly and afford more accurate transcriptome’s information while using the Next-generationSequencing(NGS)technology. This article compares several main methods and platforms of transcriptome in recent years, and review theprinciple, purpose, steps, bioinformatics’ analysis and applications in related fields of RNA-Seq. This will be afford useful reference for relatedresearch.
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    Application and Biosynthesis Strategies of Unnatural Amino Acids
    LI Hai-ning, ZHANG Hong-bing, GENG Ge-xia, LI Ran, JIA Zhen-hua
    Biotechnology Bulletin    2023, 39 (12): 43-55.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-0648
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    Unnatural amino acids(UAAs)are a special class of amino acids that are not constrained by genetic codons. They have unique spatial configurations and chemical properties, which provide new resources and opportunities in several fields. Currently, UAAs can be synthesized by both chemical synthesis and biosynthesis. Compared with chemical synthesis, biosynthesis is a promising synthesis with higher efficiency and stereoselectivity, lower cost and pollution. This paper reviews the research progress and application cases of UAAs in protein probes, enzyme engineering, antibody-drug conjugates, and antimicrobial peptides, etc. It shows how UAAs break through the limitations of natural amino acids and expand the structural and functional diversity of proteins. It also introduces the biosynthesis strategies of UAAs, including static and dynamic regulatory strategies in metabolic engineering and fermentation optimization strategies. Finally, it looks forward to the future development trends and challenges in the biosynthesis and application of unnatural amino acids, which will provide a reference and inspiration for the UAAs synthesis and development.

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    Phytomelatonin: An Emerging Signal Molecule Responding to Abiotic Stress
    ZHOU Hong-dan, LUO Xiao-ping, TU Mi-xue, LI Zhong-guang
    Biotechnology Bulletin    2024, 40 (3): 41-51.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-0880
    Abstract1267)   HTML42)    PDF(pc) (2277KB)(8368)       Save

    Compared with other five traditional hormones, the identification of melatonin(MT)was done in only two decades. MT is an emerging plant hormone, which is a pleiotropic signaling molecule with multiple physiological functions in organisms. In plants, MT is called phytomelatonin, which is not only involved in the regulation of seed germination, root system architecture, stomatal movement, biological rhythm, flowering, and senescence, but also in the response of plants to biotic and abiotic stresses by activating the activities of antioxidant system, scavenging ROS, followed by reducing osmotic stress, oxidative stress, protein denaturation, and cell damage caused by biotic and abiotic stress, thus plants respond to biotic and abiotic stresses. Based on the latest research progress of MT metabolism in plant and its response to abiotic stress, the anabolism and catabolism of MT in plants are summarized. The plant resistance to high temperature, low temperature, drought, salt, heavy metals, ultraviolet radiation and waterlogging is improved ultimately under stress by MT directly removing ROS and/or triggering the signal transduction pathway, up-regulating resistance related gene expression, and then activating the vitality of osmoregulation system and antioxidant system, promoting the synthesis of stress protein and secondary metabolic substances, stable photosynthesis and carbon metabolism, and thus reducing the accumulation of ROS and cell oxidative damage. This paper lays the theoretical foundation for understanding the metabolism, physiological function, and cellular signal transduction of MT in plants, and point out the future research directions.

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    Advances in the Regulation of Plant Growth, Development and Stress Physiology by Small Peptide Hormones
    HU Hai-lin, XU Li, LI Xiao-xu, WANG Chen-can, MEI Man, DING Wen-jing, ZHAO Yuan-yuan
    Biotechnology Bulletin    2023, 39 (7): 13-25.   DOI: 10.13560/j.cnki.biotech.bull.1985.2022-1468
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    Small peptide hormones are usually referred to as peptides containing 5 to 100 amino acids in length. In plants, the contents of small peptide hormones are very low, the molecular weight is small, the quantity is large, and the source and processing mechanism is complex. This gives small peptides a variety of biological functions. They can bind to receptors at very low concentrations, regulate physiological processes such as cell division and growth, tissue and organ differentiation, flowering and fruiting, maturation and senescence, and coordinate plant responses to various stress environments. As an important medium of signal transduction among cells, the molecular mechanism of small peptide hormones in regulating growth and development is the hotspot and front topic in Botany. First the research progress of the structure, synthesis, classification and function of small peptide hormones were systematically reviewed. Furthermore, the research progress of CIF, CLE, RALFs, PSK, SYS in regulating plant growth and development and stress physiology was emphatically summarized, and the application prospect of plant small peptide hormones was outlined, which may provide an important theoretical basis for the in-depth research, development and application of plant small peptide hormones.

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    Roles of MYB Transcription Factor in Regulating the Responses of Plants to Stress
    HU Ya-dan, WU Guo-qiang, LIU Chen, WEI Ming
    Biotechnology Bulletin    2024, 40 (6): 5-22.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-1186
    Abstract5427)   HTML105)    PDF(pc) (2607KB)(8294)       Save

    MYB is one of the biggest multifunctional transcription factors(TFs)families in plants. It is widely involved in regulating multiple process at the transcription level, including plant growth and development, signal transduction of various phyhormones and response to abiotic and biotic stresses. The N-terminal of MYB contained a typical MYB domain, which is divided into different subgroups according to the number of R repeats in the domain. However, the C-terminal domain is very different, thus it is functionally diverse. Many studies have been shown that MYB can bind to the downstream target gene promoter cis-acting elements MYBCORE and AC-box alone or through interaction with other proteins after being activated by environmental signals, and participate in regulating the expressions of downstream target genes, thereby regulating plant tolerances to stresses. Additionally, MYB responded to abiotic and biotic stresses by regulating signaling pathways such as abscisic acid(ABA), brassinolide(BR), jasmonic acid(JA)and reactive oxygen species(ROS). In this review, the structure, classification, and action type of the MYB families in plants were summarized, and the regulatory mechanisms of MYB in the response to abiotic and biotic stresses such as salt, drought, extreme temperature, nutrient deficiency, heavy metals, and pathogenic bacteria, were mainly reviewed. The key direction of future studies were also prospected. This paper may provide genetic resources and theoretical support for genetic improvement of stress resistance of crops and biological breeding in the future.

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    Advances in Plant Flavonoids UDP-glycosyltransferase
    YAO Yu, GU Jia-jun, SUN Chao, SHEN Guo-an, GUO Bao-lin
    Biotechnology Bulletin    2022, 38 (12): 47-57.   DOI: 10.13560/j.cnki.biotech.bull.1985.2022-0236
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    Flavonoids are important natural products in plants and usually exist in the form of glycosides. Uridine diphosphate glycosyltransferases(UGTs)can modify flavonoids to form a variety of flavonoid glycosides, which are the active substances of flavonoid medicines in many medical plants. In recent years, as more and more plant genomes have been elucidated, a large number of glycosyltransferases involved in flavonoid synthesis have been identified. In this paper, we firstly introduced the structural features and family classification of plant UGTs, and then reviewed the advances in the study of flavonoid UGTs, had a complete summary on the selectivity of modification sites of plant flavonoid UGT in varied families, as well as the specificity of donors and receptors. It is aimed to lay a foundation for investigating the correlation between structure and function of plant flavonoid UGTs as well as the mining and identification of novel flavonoid UGTs.

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    Research Progresses in the Synthetic Biology of Terpenoids
    SUN Li-chao, LI Shu-ying, WANG Feng-zhong, XIN Feng-jiao
    Biotechnology Bulletin    2017, 33 (1): 64-75.   DOI: 10.13560/j.cnki.biotech.bull.1985.2017.01.007
    Abstract1887)   HTML    PDF(pc) (1825KB)(7900)       Save
    The terpenoids represent the largest class of natural products with biological activities of antitumor and anti-allergy,thus they have been widely applied in the area of food,cosmetics and medical health,presenting huge potential and broad market prospects. Recent years,researchers applied functional genomics and metabonomics approaches to deeply study the biosynthesis pathways of terpenoids,providing tons of data for their synthetic biology. The construction of engineered yeasts using synthetic biology enabled the efficient synthesis of multi-target terpenoids,and highly improved the overall production level. Thus,the synthetic biology approach is expected to be an efficient way of producing plant-derived terpenoids. First,we introduced the concept of synthetic biology,summarized the important functions and applications of plant-derived terpenoids,briefly reviewed the biosynthesis pathways,and concluded the alternative production ways. Then,we discussed the design strategies of synthetic biology for terpenoids thoroughly. Finally,we elaborated the advances on the biosynthetic biology of varied terpenes with common terpenes as the studied cases.
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    Advances in the Antioxidant Activities of Lactic Acid Bacteria and Their Applications
    ZHAO Jia, ZHAO Fei-yan, SHEN Xin, GAO Guang-qi, SUN Zhi-hong
    Biotechnology Bulletin    2023, 39 (11): 182-190.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-0603
    Abstract702)   HTML26)    PDF(pc) (1205KB)(7750)       Save

    As a natural antioxidant, the antioxidant properties of lactic acid bacteria(LAB)have been one of the hot spots of research. Most of the LAB are anaerobic or partly anaerobic, and are generally suitable to grow in anaerobic environment or low oxygen. Some strains of LAB have good antioxidant properties because they contain highly active antioxidant enzymes and redox systems. As a common fermenting microorganism, LAB are not only useful in food production for improving flavour, but their antioxidant effect is important for extending the shelf life of food. Likewise, oxidative stress in the body is closely related to many physiological and pathological phenomena, and numerous studies have demonstrated the beneficial function of LAB in alleviating related diseases. This paper reviews the oxidative stress of LAB, their response and defence mechanisms, and technical methods and applications to improve the antioxidant activity of LAB, with the aim of providing theoretical references for an in-depth understanding of the antioxidant mechanisms of LAB and the development of strains with fine antioxidant activity.

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    Research Advances in the Molecular Mechanisms of Plant Response to Saline-alkali Stress
    FENG Kai-yue, ZHAO Xin-yan, LI Zi-yan, QIU Jiang-ming, CAO Yi-bo
    Biotechnology Bulletin    2024, 40 (10): 122-138.   DOI: 10.13560/j.cnki.biotech.bull.1985.2024-0410
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    Soil salinization is one of a major environmental factor constraining global agricultural development. Breeding saline-alkali tolerant crops is a fundamental strategy to address soil salinization. However, currently there are challenges such as limited saline-alkali-tolerant genes and germplasm resources. Exploring new genes for saline-alkali tolerance and elucidating the molecular mechanisms of plant responses to saline-alkali stress are crucial for developing saline-alkali-tolerant crops. Saline stress includes neutral salt stress and alkaline salt stress. Neutral salt stress induces osmotic stress, and excessive accumulation of Na+ and Cl- may lead to ion toxicity, causing oxidative stress and a series of secondary stresses. Compared to neutral salt stress, alkaline salt stress also induces high pH stress. This review outlines the impact of saline-alkali stress on plant growth and development, as well as the molecular mechanisms underlying plant adaptation to saline-alkali stress and summarizes the significant research progress in plant saline-alkali stress responses over the past decade. It covers plant perception and signal transduction of saline-alkali stress and the molecular mechanisms of plant responses to osmotic stress, ion toxicity, oxidative stress, bicarbonate and carbonate stress, and high pH stress caused by neutral and alkaline salt stress. On this basis, the application of saline-alkali-tolerant genes in crop breeding is also discussed, and key scientific issues that require further research to improve plant saline-alkali tolerance are proposed. The aim of this work is to deepen the understanding of the molecular mechanisms of plant adaptation to saline-alkali stress, providing a theoretical basis for breeding high-yielding and saline-alkali-tolerant crops, and improving the development and utilization rate of salt-affected land.

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    Advances in the Development and Regulation of Vascular Cambium
    GE Yan-rui, ZHAO Ran, XU Jing, LI Ruo-fan, HU Yun-tao, LI Rui-li
    Biotechnology Bulletin    2023, 39 (3): 13-25.   DOI: 10.13560/j.cnki.biotech.bull.1985.2022-0865
    Abstract902)   HTML30)    PDF(pc) (1632KB)(7600)       Save

    The vascular cambium, part of the secondary lateral meristem, contributes to the lateral growth of a plant. In recent years, many studies have strengthened our understanding of the vascular cambium. However, we still know far less about the vascular cambium than the apical meristem. Genetic and molecular studies have revealed that the proliferation and differentiation of cambium is regulated by many factors, including long-distance hormone signals, short-range peptide signals, and interactions between them. In addition, a large number of transcription factors and microRNAs also play a crucial role in the regulation of the vascular cambium activities. This review focuses on the novel discoveries on the development of vascular cambium and its regulation of proliferation and differentiation. The review also summarizes the current research and prospects for future research in this field.

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    Advances of Trichoderma in Controlling Root Knot Nematodes and Cyst Nematodes
    LUO Ning, JIAO Yang, MAO Zhen-chuan, LI Hui-xia, XIE Bing-yan
    Biotechnology Bulletin    2023, 39 (2): 35-50.   DOI: 10.13560/j.cnki.biotech.bull.1985.2022-0618
    Abstract1829)   HTML62)    PDF(pc) (2059KB)(7545)       Save

    Root-knot nematode(Meloidogyne spp.)and cyst nematode(Heterodera spp.)are two kinds of plant-parasitic nematodes that are the most agriculturally damaging group of plant-parasitic nematodes worldwide. They infect roots the of the host plant, obtaining nutrition through giant cells or syncytia, affecting plant growth and development, and causing severe economic losses to crops. Trichoderma spp. is an important biocontrol resource in agricultural production. With the improvement of environmental protection awareness, Trichoderma spp. has recently attracted more and more attention as a biocontrol resource of plant-parasitic nematodes. Here we discussed the biocontrol mechanism, action mode, influencing factors, existing problems, and production application of Trichoderma against root-knot nematode and cyst nematode. Finally, we analyzed the issues of Trichoderma in biological control and provided insight into their application.

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    Research Progress of bHLH Gene Family in Plants and Its Application Prospects in Medical Plants
    AN Chang, LU Lin, SHEN Meng-qian, CHEN Sheng-zhen, YE Kang-zhuo, QIN Yuan, ZHENG Ping
    Biotechnology Bulletin    2023, 39 (10): 1-16.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-0243
    Abstract962)   HTML48)    PDF(pc) (3127KB)(7538)       Save

    The basic/helix-loop-helix (bHLH) transcription factor represents the second largest family of transcription factors in the plant kingdom. It is widely distributed across the genomes of various plants and plays crucial regulatory roles in plant growth, development, secondary metabolism, and responses to abiotic stresses. Here, we present a comprehensive review focusing on the structural characteristics, taxonomic rules, and biological functions of the bHLH gene family, with particular emphasis on its involvement in plant growth, development, responses to abiotic stresses (such as drought, low temperature, salt, and heavy metals), and its significant role in the biosynthesis and dynamic accumulation of secondary metabolites. This thorough investigation allows for a deeper understanding of the contributions of bHLH to growth, development, stress resistance, and quality formation in plants. Moreover, it provides valuable insights for future research concerning the molecular regulatory mechanisms of bHLH in plant growth, development, stress resistance, quality formation, and the exploration of germplasm resources. Furthermore, bHLH has emerged as a prominent focus in the realms of molecular biopharmacology and ecological agriculture of Chinese medicine due to its extensive involvement in regulating the synthesis and accumulation of secondary metabolites in plants. We also summarize recent progress on the bHLH gene family and its members within two medicinal plants, namely Salvia Miltiorrhiza and Artemisia annua. This investigation aims to offer valuable references for in-depth studies on the bHLH gene family in medicinal plants and to propose novel ideas for the advancement of molecular breeding and anthropomorphic cultivation of medicinal plants, as well as the development of ecological agriculture for Chinese medicine.

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    Application of Chemical Proteomics in Identifying the Molecular Targets of Natural Products
    ZHOU Lu-qi, CUI Ting-ru, HAO Nan, ZHAO Yu-wei, ZHAO Bin, LIU Ying-chao
    Biotechnology Bulletin    2023, 39 (9): 12-26.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-0188
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    The development and utilization of new green pesticides are conducive to the sustainable development of agriculture. Studying active leading discovery and action mechanisms based on natural products is essential for creating new pesticides. However, its target and action mechanism are difficult to determine, which hinders its development in new drug research and development. Therefore, discovering compound new targets is an important and arduous task for creating new pesticides. As a new technology in the post-genomic era, chemical proteomics has become one of the essential means of drug targeting. This paper reviewed the discovery methods and typical cases of molecular targets of chemical compounds based on proteomics and introduced main principles, applications, advantages and limitations of these technologies, aiming to provide references for the research of natural product targets and new pesticide creation by explaining the progress of the latest methods of discovering drug action targets based on chemical proteomics.

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    Research Progress on Plant AP2/ERF Transcription Factor Family
    ZHANG Qi, CHEN Jing, LI Li, ZHAO Ming-zhu, ZHANG Mei-ping, WANG Yi
    Biotechnology Bulletin    2018, 34 (8): 1-7.   DOI: 10.13560/j.cnki.biotech.bull.1985.2017-1142
    Abstract1808)   HTML    PDF(pc) (1114KB)(7371)       Save
    As one of the largest transcription factor family,AP2/ERF transcription factors are common in plants,and have attracted much attention because of their important role in gene breeding. The AP2/ERF transcription factor family contains at least one AP2 conservative domain with about 60 amino acids. According to the number of domains and the sequence of recognition,AP2/ERF transcription factor family can be classified into 5 subfamilies of AP2,ERF,DREB,RAV,and Soloist;and the number of AP2/ERF transcription factor and their subfamily members are variable in different plants,such as Arabidopsis,rice,maize,tomato,etc. Through responses to the regulation of ethylene,cytokinin and auxin,AP2/ERF transcription factors are reported to participate directly or indirectly in multiple processes of plant development including seed development,flower and fruit organ formation. Except for primary metabolism,AP2/ERF transcription factors affect significantly the regulation of plant secondary metabolism,particularly in improving the accumulation of active ingredients of medicinal plants(such as artemisinin,paclitaxel and lignin). Meanwhile,the AP2/ERF gene of Arabidopsis are also reported to have a positive regulatory function of resistance to Botrytis cinerea,while some AP2/ERFgenes play a vital role in response to drought,high salt,low temperature,hypoxia and other abiotic stresses. In addition,the AP2/ERF transcription factors also participate in the non-biological signal transduction pathways mediated by ethylene. In this study,the structure and classification characteristics of AP2/ERFtranscription factors,their quantity distribution in different plants will be introduced,and the roles of AP2/ERF transcription factors in plant development,secondary metabolism,biotic or abiotic stress and signal transduction will be expounded. Overall,this review is aimed to provide theory basis for cultivating transgenic crops with high-yielding and stress tolerances in the future.
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    Research Progress in the Production of Polyunsaturated Fatty Acids by Yarrowia lipolytica Cell Factories
    HE Si-cheng, ZHANG Zi-yuan, HAN Yu-qing, MIAO Lin, ZHANG Cui-ying, YU Ai-qun
    Biotechnology Bulletin    2024, 40 (1): 72-85.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-0657
    Abstract1440)   HTML32)    PDF(pc) (1398KB)(7267)       Save

    Polyunsaturated fatty acids(PUFA)stand as linear olefinic fatty acids that assume a pivotal role as structural constituents within biofilms in living organisms. They wield the power to govern glucose, lipid, and hormone metabolism, yielding an array of physiological functions. Their capabilities encompass fostering developmental progress, bolstering immunity, preventing disease, and the essential maintenance of overall bodily well-being. Consequently, PUFA hold significant intrinsic worth and expansive developmental potential across diverse fields such as functional food, medicine, and animal feed. In contrast to traditional marine biological extraction techniques, microbial synthesis approaches offer distinct advantages, encompassing shortened production cycles, streamlined procedures, and environmental compatibility. In recent years, the utilization of microbial cell factories for generating PUFA and other microbial oils has emerged as a focal point within both scientific and industrial communities. A standout player in this arena is Yarrowia lipolytica, an unconventional oleaginous yeast that stands out due to its inherent high-yield lipid and fatty acid production capacity. As substantiated by the publication of Y. lipolytica's complete genome sequence and the rapid advancements in gene expression vectors, genetic transformation methods, synthetic biology components, and gene editing technologies, the domain of metabolic engineering focused on Y. lipolytica as a chassis cell for microbial production is undergoing gradual expansion. This article commences by meticulously reviewing the origins and intrinsic pathways that underpin the natural synthesis of PUFA. It subsequently encapsulates the contemporary landscape of research, pinpointing metabolic engineering strategies applied to reconfigure Y. lipolytica into a PUFA producer. It further presents an in-depth examination of the central hurdles associated with the deployment of the engineered Y. lipolytica strains for PUFA production. Culminating with foresight, the article sketches out the overarching developmental trends in harnessing Y. lipolytica cell factories for large-scale industrial PUFA production, aiming to provide theoretical support and ideas for establishing the microbial cell factories in efficiently synthesizing PUFA.

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    Advances in Upstream Open Reading Frame in Plant Genes
    XUE Jiao ZHU Qing-feng FENG Yan-zhao CHEN Pei LIU Wen-hua ZHANG Ai-xia LIU Qin-jian ZHANG Qi YU Yang
    Biotechnology Bulletin    2023, 39 (4): 157-165.   DOI: 10.13560/j.cnki.biotech.bull.1985.2022-0832
    Abstract818)   HTML31)    PDF(pc) (3361KB)(7245)       Save

    uORF(upstream open reading frame)is a kind of mRNA element that can accurately control protein translation. It is located in the 5' leader region of mRNA. It has been reported to regulate the translation rate of downstream mORF(main open reading frame)by inhibiting the initiation of translation. Currently, the prediction and identification of plant uORF mainly focus on bioinformatics prediction and translatomics identification technology. uORF has regulatory roles on plants in many aspects, such as growth and development, nutrition and metabolism, disease resistance and immunity. In this review, we summarize the classification, functional mechanism, prediction and identification methods of plant uORF, strategies for plants to evade uORF, and the application progress of plant uORF in engineering. The purpose of this paper is to gain a more systematic and in-depth understanding of the function and mechanism of plant uORFs, and to provide a reference for the application of uORF in crop molecular breeding.

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    Research Advances on the Mechanism of Glyceraldehydes-3-phosphate Dehydrogenase in Plant
    Lu Qian, Mi Xiaoju, Cui Jizhe
    Biotechnology Bulletin    2013, 0 (8): 1-6.  
    Abstract927)      PDF(pc) (1372KB)(7186)       Save
    Glycolysis and the Calvin cycle are critical metabolic pathways of energy supply and carbon fixation in plants. Glyceraldehyde-3-phosphate dehydrogenase plays a central role in glycolysis and the Calvin cycle. Recent research results disclosed that the function and regulation of GAPDH turned out to be quite diverse and complex. This article provides an overview of the latest progress on the GAPDH type and function, the specificity interaction of GAPDH and NAD(P), PRK/GAPDH/CP12 complex and regulation, and the mechanism of GAPDH response to stress in plants.
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    Research Progress of Lignocellulose Pretreatment and Valorization Method
    ZHAI Xu-hang, LI Xia, YUAN Ying-jin
    Biotechnology Bulletin    2021, 37 (3): 162-174.   DOI: 10.13560/j.cnki.biotech.bull.1985.2020-0892
    Abstract1383)   HTML54)    PDF(pc) (2793KB)(7137)       Save

    Lignocellulosic biomass is the most abundant renewable biological resource on earth. With the consumption of fossil energy and environmental pollution,the conversion of biomass to biofuel with the goal of replacing fossil fuels has attracted widespread attention. Lignocellulose has a strong natural anti-degradation barrier,which needs to be pretreated by physical,chemical or microbiological means,and then converted into biofuel and other value-added products with lower cost and higher efficiency. On the basis of summarizing the advantages and disadvantages of traditional pretreatment methods such as acid and alkali pretreatment,this article reviews the improvement of combined pretreatment,and the research progress of new pretreatment technologies such as γ-valerolactone pretreatment,deep eutectic solvent pretreatment,and ecological niches pretreatment. This article also summarizes the new methods of protection,depolymerization and modification of lignin in the process of lignin valorization,and points out the application and deficiencies of pretreatment methods in industrial production,with a view to providing a reference for the study of lignocellulose biomass conversion.

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    Advances in the Application of Machine Learning Methods for Directed Evolution of Enzymes
    WANG Mu-qiang, CHEN Qi, MA Wei, LI Chun-xiu, OUYANG Peng-fei, XU Jian-he
    Biotechnology Bulletin    2023, 39 (4): 38-48.   DOI: 10.13560/j.cnki.biotech.bull.1985.2022-0724
    Abstract1229)   HTML87)    PDF(pc) (6574KB)(7056)       Save

    Directed evolution can increase the rate of enzyme evolution by mimicking the natural evolutionary process and has become a key technology for enzyme engineering. Directed evolution has played an important role in biocatalysis and drug design, however the experimental screening is in great challenge due to the large number of mutant libraries caused by the randomness of mutations. In recent years, emerging technologies such as artificial intelligence and big data processing have also become crucial in biocatalysis researches. Machine learning methods are statistical learning approaches to obtain sequence/structure mappings to enzyme function in a data-driven manner, which will improve the efficiency of enzyme engineering. This paper reviews the state-of-the-art technologies involved in machine learning models, especially focusing on the research and application progresses of machine learning methods in enzyme engineering. With the advancement of machine learning algorithms and technologies, it is expected that more accurate and effective models will be proposed in the future to promote screening of new enzymes and accurate design of biocatalysts.

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    Research Progress on the Property and Application of Streptococcus thermophilus
    Tian Hui, Liang Hongzhang, Huo Guicheng, Evivie Smich Ecareri
    Biotechnology Bulletin    2015, 31 (9): 38-48.   DOI: 10.13560/j.cnki.biotech.bull.1985.2015.09.006
    Abstract817)   HTML    PDF(pc) (1191KB)(7051)       Save
    Streptococcus thermophilus is one of the most important species of lactic acid bacteria in industry, and it is widely used in the process of producing fermented milk. This review discusses researches on the qualification and application of S. thermophilus, the properties of genome and fermentation, phage defense system, and symbiotic mechanism. In the end, the potential application of modern biological technologies in the study of S. thermophilus properties is prospected.
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    Research Progress in Metabolites Produced by Bacillus Against Three Common Plant Pathogenic Fungi
    WANG Wei-chen, ZHAO Jin, HUANG Wei-yi, GUO Xin-zhu, LI Wan-ying, ZHANG Zhuo
    Biotechnology Bulletin    2023, 39 (3): 59-68.   DOI: 10.13560/j.cnki.biotech.bull.1985.2022-1315
    Abstract2030)   HTML23)    PDF(pc) (1140KB)(6944)       Save

    Plant pathogenic fungi are one of the major threats to agricultural production. Applying biological agents to control pathogenic fungi is widely considered to be a safer and more sustainable strategy. Bacillus species can produce a variety of antifungal active substances(lipopeptides, bacteriocins and enzymes, etc.), which is the most widely used biocontrol bacteria at present. Biocontrol agents based on Bacillus spp. and its metabolites can effectively control plant pathogenic fungi and play an important role in agricultural production. This paper focuses on the biological control potential of Bacillus metabolites and their antagonistic properties and mechanisms against three common plant pathogenic fungi(Magnaporthe oryzae, Fusarium oxysporum, and Botrytis cinerea). Several important Bacillus metabolites were introduced by investigating the related literatures published in recent years on the antifungal activities of Bacillus metabolites, and the antifungal effects and mechanisms of Bacillus metabolites on important plant pathogenic fungi were summarized. And meanwhile the research methods and effects of Bacillus metabolites on the damages of cell wall and cell membrane of pathogenic fungi, inhibition of fungal spore germination and mycelial growth, and competitive binding with fungal DNA were summarized. The aim of this review is to provide guidance for the preparation and application of Bacillus biocontrol agents in the future.

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    Epigenetic Regulation of Yield-related Traits in Maize and Epibreeding
    ZHANG Dao-lei, GAN Yu-jun, LE Liang, PU Li
    Biotechnology Bulletin    2023, 39 (8): 31-42.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-0378
    Abstract2429)   HTML29)    PDF(pc) (1928KB)(6933)       Save

    Crop phenotypic diversity is influenced by many factors, and epigenetic variation can control crop traits and stress response through epigenetic modification to regulate gene expressions, and then affect crop yield. The main agronomic traits affecting maize yield include plant height, leaf angle and root. In addition, germplasm resources, biotic stress and abiotic stress are also key factors affecting maize yield. The main epigenetic regulation modes in crops include histone modification, DNA modification, RNA modification, non-coding RNA and chromatin remodeling. In this review, the epigenetic mechanism of the main agronomic traits in maize is summarized from the perspective of epigenetic regulation, and the new strategy of epigenetics-mediated crop breeding(epibreeding)to improve maize yield is proposed in combination with CRISPR/Cas-based epigenome editing technology.

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    Research Progress on the Role of Transcription Factor HIF-1α and Its Signal Pathway in the Pathogenesis
    YANG Meng-si, ZHOU Na, WANG Zhi-gang,HAO Hui-fang
    Biotechnology Bulletin    2016, 32 (8): 8-13.   DOI: 10.13560/j.cnki.biotech.bull.1985.2016.08.002
    Abstract1306)   HTML    PDF(pc) (1114KB)(6904)       Save

    Hypoxia inducible factor-1α(HIF-1α)is a transcription factor under hypoxia condition,which widely exists in mammals and human body. It is a key factor responding to hypoxic stress. HIF-1α is a subunit of hypoxia inducible factor-1(HIF-1)and considered as the master transcriptional regulator of cellular and developmental response to hypoxia,and regulates the activity of HIF-1. During hypoxia,HIF-1α translocates from the cytoplasm to the nucleus,where it dimerizes with HIF-1β and the transcriptionally active HIF-1 complex is formed;the activated HIF complex then associates with HREs in the regulatory regions of target genes to induce gene expression. Forming varied signal pathways with multiple proteins in up- and down- streams,HIF-1α mediates hypoxic signals,then regulates a series of hypoxic compensatory response of cell,which plays a crucial role in body growth,physiological and pathological processes,thus it is a focus of biomedical research. We reviewed the role of transcription factors HIF-1α and its signaling pathway in the occurrence of disease , and introduced to the relationship among HIF-1α and growth, development, inflammation and tumor , then carryed out the prospect, in order to better be used in biomedical.

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    Spatially Resolved Metabolomics:Progress and Challenges
    YIN Zhi-bin, HUANG Wen-jie, WU Xin-zhou, YAN Shi-juan
    Biotechnology Bulletin    2021, 37 (1): 32-51.   DOI: 10.13560/j.cnki.biotech.bull.1985.2020-1374
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    Spatially resolved metabolomics is developed by integrating mass spectrometry imaging(MSI)and metabolomics methods for accurate determination of types,contents,and spatial differentiation of endogenous and exogenous metabolites within plant and animal tissues. Benefiting from the unique features of label-free and non-specific detections,as well as high sensitivity,high chemical coverage,and simultaneous detection of elements and molecules,MSI has gained an increasing attention as a powerful tool in spatial and temporal visualization of various metabolites,peptides,and proteins. Herein,we introduce the current research status of metabolomics and MSI techniques,then focus on the emerging applications of spatially resolved metabolomics in plant and animal tissues,as well as at the single cell levels,and finally prospect the current bottlenecks and future developing trends in spatially resolved metabolomics. As an emerging molecular imaging-based omics technique,spatially resolved metabolomics is featured for its label-free and visualized detection of absorption,distribution,metabolism,and excretion of exogenous drugs in animal tissues,and provides insights into the biosynthesis,transport pathways,and accumulation of various metabolites in plant tissues. This technique facilitates further applications in the discovery of targeted drugs,understanding of pathological mechanisms,and a spatial metabolic network closely related to the growth and development of plants and animals.

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    Advances in Jasmonic Acid Regulating Plant Growth and Development as Well as Stress
    SUN Yu-tong, LIU De-shuai, QI Xun, FENG Mei, HUANG Xu-zheng, YAO Wen-kong
    Biotechnology Bulletin    2023, 39 (11): 99-109.   DOI: 10.13560/j.cnki.biotech.bull.1985.2023-0323
    Abstract2041)   HTML56)    PDF(pc) (2301KB)(6762)       Save

    As immobile organisms, plants perceive external stimuli and respond to them by altering their own signal transduction. Plant hormones function as important signaling molecules in plant responses to different biotic and abiotic stresses in order to regulate plant growth and development and to adapt to changing environments. Jasmonic acid is one of the important hormones in plants, and its synthetic pathways and physiological effects have been studied extensively, but there is still much lack of research on its signal transduction pathways to sense and respond to environmental changes and its interactions with other plant hormones. This paper focuses on the research progress of jasmonic acid in the regulation of plant growth and development, stress response and its interaction with other plant hormones.

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    Screening of Potential PGPR Strains Producting Growth-promoting Volatile Compounds and Study on Their Growth-promoting Characteristics
    GAO Ya-hui, JIANG Ming-guo, FENG Jing, ZHOU Gui
    Biotechnology Bulletin    2022, 38 (3): 103-112.   DOI: 10.13560/j.cnki.biotech.bull.1985.2021-0619
    Abstract659)   HTML17)    PDF(pc) (4761KB)(6706)       Save

    The aim of this work is to screen the potential plant growth-promoting rhizobacteria(PGPR)whose volatile organic compounds(VOCs)can promote plant growth,and to investigate the growth-promoting effect of the VOCs on plants and other growth-promoting functions,which provides new ideas and reliable materials for the research and development of microbial fertilizers. Using 48 functional bacteria isolated from marine samples and preserved in our laboratory as test strains,two-compartment plate test and VOCs pot experiment were used to screen them,16S rRNA to identify them,and GC-MS to analyze the VOCs components produced by the strains. Finally plate activity test was applied to detect the activities of the bacteria for nitrogen fixation,phosphorus solubilization and IAA production. The results showed that a strain of potential PGPR GX14001 was obtained. The VOCs produced by PGPR-GX14001 showed obvious growth-promoting effects on both Nicotiana benthamiana and Brassica chinensis L. seedlings. The strain GX14001 was identified as Microbacterium aurantiacum by 16S rRNA. Seven specific compounds were obtained by GC-MS analysis of VOCs. The GX14001 had strong dissolved organic/inorganic phosphorus activity and general nitrogen fixation activity,but weak IAA production capacity,which was 1.737 μg/mL. PGPR promoted the growth of plants through different growth-promoting mechanisms. The results showed that the VOCs produced by GX14001 had obvious growth-promoting effect on plants,but not high in the other aspects of growth-promoting activity;and there was no high positive correlation between them,indicating that the most important growth-promoting effect was via the produced VOCs.

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    Towards the Understanding on the Physiological Functions of Bile Acids and Interactions with Gut Microbiota
    XIONG Shu-qi
    Biotechnology Bulletin    2023, 39 (4): 187-200.   DOI: 10.13560/j.cnki.biotech.bull.1985.2022-0931
    Abstract874)   HTML33)    PDF(pc) (2423KB)(6648)       Save

    Bile acids(BAs)are produced from the metabolism of cholesterol. In the liver, cholesterol is converted into primary bile acids,and they are metabolized into secondary bile acids by gut microbiota when they reache the intestinal tract. Their homeostasis are maintained in the body through the enterohepatic circulation. The molecules of bile acids have both hydrophilic and lipophilic ends, which can play the role of detergent and help to dissolve and absorb dietary lipids and lipid-soluble vitamins. This also endows bile acids with certain antibacterial properties. The interaction between bile acids and gut microbiota is not only reflected in their own physiological functions of bile acids, but also in the regulations of the gut microbial composition and abundances in bile acid metabolism. Bile acids regulate glucose, lipid and energy metabolisms, and immune and inflammatory reactions by activating different receptor signal pathways. This article reviews the metabolic process of bile acids, and discusses how it regulates host physiological functions through FXR, TGR5 and other receptor signal pathways. It also provides references for maintaining animal health and promoting livestock and poultry production performance through scientifically and reasonably regulating gut microbiota and its metabolites.

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    The Strategy for Enhancing Foreign Proteins Expression by Signal Peptide in Bacillus subtilis
    MIAO Hua-biao, CAO Yan, YANG Meng-han, HUANG Zun-xi
    Biotechnology Bulletin    2021, 37 (6): 259-271.   DOI: 10.13560/j.cnki.biotech.bull.1985.2020-1255
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    As an important prokaryotic expression host strain,Bacillus subtilis has always been regarded as preferred model strain for foreign protein expression,featuring strong protein secretion,clear genetic background,no codon preference,rapid growth and non-pathogenicity. Signal peptide is a short peptide chain located in the N-terminal of the precursor protein,with the function of guiding and regulating the folding of the precursor protein. Meanwhile,it plays a very important role in the process of protein transfer and secretion. At present,there is no regularity to find the efficient secretion of different foreign proteins by using the signal peptide of B. subtilis. For this reason,the structural characteristics,classification,transport pathway and application of signal peptides from B. subtilis are reviewed here,aiming to provide certain reference for further screening the optimal signal peptides of foreign proteins in B. subtilis expression system.

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    Histone Deacetylases and Its Roles in Plants
    DONG Ya-ru, DU Jian-xun, CHEN Chuan-jie, ZHAO Dong-xiao, WANG Zhao-hong
    Biotechnology Bulletin    2016, 32 (9): 44-49.   DOI: 10.13560/j.cnki.biotech.bull.1985.2016.09.007
    Abstract849)   HTML    PDF(pc) (1366KB)(6487)       Save
    Histone deacetylases(HDACs)are a supergene family widely distributed in eukaryotes(including yeast,mammals and plants). HDACs act in concert with histone acetyltransferases(HATs)to regulate the status of histone acetylation,thus affecting the structure and function of the chromosome and regulating the gene transcription and a variety of functions of the cells. The researches on plant HDACs are gradually increasing,and many HDAC genes have been identified and characterized in different plants. This paper reviews the classification and the functions of HDACs in development and stress responses in plant,to provide a theoretical basis for further study of epigenetic regulation mechanism of HDAC in plant and cultivate new varieties of resilience.
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