Biotechnology Bulletin ›› 2024, Vol. 40 ›› Issue (5): 167-178.doi: 10.13560/j.cnki.biotech.bull.1985.2023-1092
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HOU Ya-qiong1(), LANG Hong-shan1, WEN Meng-meng1, GU Yi-yun2, ZHU Run-jie2, TANG Xiao-li1()
Received:
2023-11-20
Online:
2024-05-26
Published:
2024-06-13
Contact:
TANG Xiao-li
E-mail:houyaqiong2023@163.com;tangxiaoli.1@163.com
HOU Ya-qiong, LANG Hong-shan, WEN Meng-meng, GU Yi-yun, ZHU Run-jie, TANG Xiao-li. Identification and Expression Analysis of AcHSP20 Gene Family in Kiwifruit[J]. Biotechnology Bulletin, 2024, 40(5): 167-178.
基因Gene | 上游引物Forward primer(5'-3') | 下游引物Reverse primer(5'-3') |
---|---|---|
AcHSP20-2 | GATCTATCGCACCGTGTC | AACCTTTATGTCGTCCTTG |
AcHSP20-5 | CTTCCAGGAGGTGTATCGT | CGTCTTCTTTGGCATTGTA |
AcHSP20-9 | TCTCACCTTTGGGTTTATTG | CAGGGAACGTCATGGAA |
AcHSP20-12 | CGGGAGGAGGAGAAAGAA | CAAACAGCAGACACGGC |
AcHSP20-19 | AGAAGAATGGAGGTGATGAT | GAGATGGAGCACAAGAGTTT |
AcActin | TGCATGAGCGATCAAGTTTCAAG | TGTCCCATGTCTGGTTGATGACT |
Table 1 Primers used in the expression analysis of AcHSP20s genes
基因Gene | 上游引物Forward primer(5'-3') | 下游引物Reverse primer(5'-3') |
---|---|---|
AcHSP20-2 | GATCTATCGCACCGTGTC | AACCTTTATGTCGTCCTTG |
AcHSP20-5 | CTTCCAGGAGGTGTATCGT | CGTCTTCTTTGGCATTGTA |
AcHSP20-9 | TCTCACCTTTGGGTTTATTG | CAGGGAACGTCATGGAA |
AcHSP20-12 | CGGGAGGAGGAGAAAGAA | CAAACAGCAGACACGGC |
AcHSP20-19 | AGAAGAATGGAGGTGATGAT | GAGATGGAGCACAAGAGTTT |
AcActin | TGCATGAGCGATCAAGTTTCAAG | TGTCCCATGTCTGGTTGATGACT |
基因 Gene | 基因组登录号 Gene ID | 等电点 pI | 分子量 Molecular weight/kD | 氨基酸数Number of amino acids | 染色体定位及基因方向Chromosome localization and gene orientation | 亚细胞定位 Subcellular location |
---|---|---|---|---|---|---|
AcHSP20-1 | Ach00g218421.2 | 6.57 | 10.16 | 88 | Chr00: 54153215.. 54154904(-) | 细胞质Cytoplasmic |
AcHSP20-2 | Ach00g239181 | 7.86 | 16.14 | 143 | Chr00: 50739806.. 50740562(-) | 过氧化物酶体Peroxisomal |
AcHSP20-3 | Ach00g329621 | 5.59 | 23.28 | 208 | Chr00: 90841963.. 90843153(-) | 叶绿体Chloroplast |
AcHSP20-4 | Ach00g479741.2 | 10.32 | 9.93 | 86 | Chr00: 135211617.. 135211877(+) | 细胞质Cytoplasmic |
AcHSP20-5 | Ach00g479761.2 | 9.14 | 40.18 | 371 | Chr00: 145805825.. 145808080(-) | 高尔基体Golgi apparatus |
AcHSP20-6 | Ach02g036831 | 7.8 | 16.56 | 152 | Chr02: 4423490.. 4423948(-) | 细胞质Cytoplasmic |
AcHSP20-7 | Ach02g046741.2 | 6.21 | 25.55 | 225 | Chr02: 516872.. 518080(-) | 叶绿体Chloroplast |
AcHSP20-8 | Ach02g223291 | 8.86 | 17.61 | 153 | Chr02: 4090770.. 4091231(-) | 细胞质Cytoplasmic |
AcHSP20-9 | Ach03g045661 | 7.63 | 25.69 | 232 | Chr03: 6797048.. 6798489(-) | 叶绿体Chloroplast |
AcHSP20-10 | Ach03g451751.2 | 9.15 | 11.12 | 96 | Chr03: 1045510.. 1045800(-) | 叶绿体Chloroplast |
AcHSP20-11 | Ach04g161211.2 | 6.45 | 24.77 | 215 | Chr04: 6179073.. 6180486(-) | 细胞质Cytoplasmic |
AcHSP20-12 | Ach06g418911.2 | 6.32 | 16.60 | 152 | Chr06: 2925504.. 2925962(-) | 细胞质Cytoplasmic |
AcHSP20-13 | Ach10g027441.2 | 5.4 | 20.33 | 181 | Chr10: 4989172.. 4989717(-) | 细胞质Cytoplasmic |
AcHSP20-14 | Ach10g027451 | 7.77 | 25.72 | 228 | Chr10: 4973842.. 4974528(-) | 细胞质Cytoplasmic |
AcHSP20-15 | Ach10g027461.2 | 6.34 | 24.95 | 221 | Chr10: 4984511.. 4985176(+) | 叶绿体Chloroplast |
AcHSP20-16 | Ach10g143161 | 9.3 | 25.78 | 228 | Chr10: 11814664.. 11815350(+) | 细胞质Cytoplasmic |
AcHSP20-17 | Ach11g263431.2 | 5.05 | 21.72 | 196 | Chr11: 8776984.. 8777574(-) | 细胞质Cytoplasmic |
AcHSP20-18 | Ach11g425231.2 | 4.43 | 10.59 | 90 | Chr11: 12263315.. 12263587(-) | 细胞质Cytoplasmic |
AcHSP20-19 | Ach12g058351.2 | 8.69 | 17.21 | 152 | Chr12: 6955029.. 6956940(+) | 细胞核Nucleus |
AcHSP20-20 | Ach13g308811 | 5.94 | 33.07 | 297 | Chr13: 1116598.. 1117580(+) | 叶绿体Chloroplast |
AcHSP20-21 | Ach13g350901 | 5.68 | 21.90 | 195 | Chr13: 14397259.. 14398212(+) | 叶绿体Chloroplast |
AcHSP20-22 | Ach13g383281 | 6.31 | 16.61 | 152 | Chr13: 11985660.. 11986118(-) | 细胞质Cytoplasmic |
AcHSP20-23 | Ach13g472651.2 | 5.94 | 33.07 | 297 | Chr13: 1497079.. 1498061(-) | 叶绿体Chloroplast |
AcHSP20-24 | Ach14g205801.2 | 6.87 | 24.06 | 216 | Chr14: 9422059.. 9423375(+) | 叶绿体Chloroplast |
AcHSP20-25 | Ach14g205811.2 | 8.86 | 36.76 | 329 | Chr14: 9424474.. 9428179(+) | 叶绿体Chloroplast |
AcHSP20-26 | Ach15g376651 | 5.67 | 22.90 | 202 | Chr15: 4758959.. 4759567(-) | 细胞质Cytoplasmic |
AcHSP20-27 | Ach16g309411.2 | 7.64 | 26.14 | 231 | Chr16: 8508810.. 8510240(-) | 叶绿体Chloroplast |
AcHSP20-28 | Ach16g331111 | 8.83 | 17.36 | 153 | Chr16: 10507526.. 10508507(+) | 细胞质Cytoplasmic |
AcHSP20-29 | Ach18g165371 | 4.99 | 22.60 | 198 | Chr18: 8741760.. 8742825(+) | 细胞质Cytoplasmic |
AcHSP20-30 | Ach19g138461.2 | 5.08 | 13.25 | 114 | Chr19: 7272801.. 7273145(+) | 细胞质Cytoplasmic |
AcHSP20-31 | Ach22g015991.2 | 7.61 | 26.63 | 241 | Chr22: 8846412.. 8851047(-) | 叶绿体Chloroplast |
AcHSP20-32 | Ach23g121711.2 | 5.37 | 22.34 | 199 | Chr23: 4320454.. 4321535(-) | 细胞质Cytoplasmic |
AcHSP20-33 | Ach23g411051.2 | 9.11 | 33.06 | 300 | Chr23: 19087591.. 19088582(+) | 叶绿体Chloroplast |
AcHSP20-34 | Ach29g196461.2 | 4.59 | 9.84 | 85 | Chr29: 3710817.. 3711074(+) | 叶绿体Chloroplast |
Table 2 Physicochemical properties of AcHSP20s proteins in kiwifruit
基因 Gene | 基因组登录号 Gene ID | 等电点 pI | 分子量 Molecular weight/kD | 氨基酸数Number of amino acids | 染色体定位及基因方向Chromosome localization and gene orientation | 亚细胞定位 Subcellular location |
---|---|---|---|---|---|---|
AcHSP20-1 | Ach00g218421.2 | 6.57 | 10.16 | 88 | Chr00: 54153215.. 54154904(-) | 细胞质Cytoplasmic |
AcHSP20-2 | Ach00g239181 | 7.86 | 16.14 | 143 | Chr00: 50739806.. 50740562(-) | 过氧化物酶体Peroxisomal |
AcHSP20-3 | Ach00g329621 | 5.59 | 23.28 | 208 | Chr00: 90841963.. 90843153(-) | 叶绿体Chloroplast |
AcHSP20-4 | Ach00g479741.2 | 10.32 | 9.93 | 86 | Chr00: 135211617.. 135211877(+) | 细胞质Cytoplasmic |
AcHSP20-5 | Ach00g479761.2 | 9.14 | 40.18 | 371 | Chr00: 145805825.. 145808080(-) | 高尔基体Golgi apparatus |
AcHSP20-6 | Ach02g036831 | 7.8 | 16.56 | 152 | Chr02: 4423490.. 4423948(-) | 细胞质Cytoplasmic |
AcHSP20-7 | Ach02g046741.2 | 6.21 | 25.55 | 225 | Chr02: 516872.. 518080(-) | 叶绿体Chloroplast |
AcHSP20-8 | Ach02g223291 | 8.86 | 17.61 | 153 | Chr02: 4090770.. 4091231(-) | 细胞质Cytoplasmic |
AcHSP20-9 | Ach03g045661 | 7.63 | 25.69 | 232 | Chr03: 6797048.. 6798489(-) | 叶绿体Chloroplast |
AcHSP20-10 | Ach03g451751.2 | 9.15 | 11.12 | 96 | Chr03: 1045510.. 1045800(-) | 叶绿体Chloroplast |
AcHSP20-11 | Ach04g161211.2 | 6.45 | 24.77 | 215 | Chr04: 6179073.. 6180486(-) | 细胞质Cytoplasmic |
AcHSP20-12 | Ach06g418911.2 | 6.32 | 16.60 | 152 | Chr06: 2925504.. 2925962(-) | 细胞质Cytoplasmic |
AcHSP20-13 | Ach10g027441.2 | 5.4 | 20.33 | 181 | Chr10: 4989172.. 4989717(-) | 细胞质Cytoplasmic |
AcHSP20-14 | Ach10g027451 | 7.77 | 25.72 | 228 | Chr10: 4973842.. 4974528(-) | 细胞质Cytoplasmic |
AcHSP20-15 | Ach10g027461.2 | 6.34 | 24.95 | 221 | Chr10: 4984511.. 4985176(+) | 叶绿体Chloroplast |
AcHSP20-16 | Ach10g143161 | 9.3 | 25.78 | 228 | Chr10: 11814664.. 11815350(+) | 细胞质Cytoplasmic |
AcHSP20-17 | Ach11g263431.2 | 5.05 | 21.72 | 196 | Chr11: 8776984.. 8777574(-) | 细胞质Cytoplasmic |
AcHSP20-18 | Ach11g425231.2 | 4.43 | 10.59 | 90 | Chr11: 12263315.. 12263587(-) | 细胞质Cytoplasmic |
AcHSP20-19 | Ach12g058351.2 | 8.69 | 17.21 | 152 | Chr12: 6955029.. 6956940(+) | 细胞核Nucleus |
AcHSP20-20 | Ach13g308811 | 5.94 | 33.07 | 297 | Chr13: 1116598.. 1117580(+) | 叶绿体Chloroplast |
AcHSP20-21 | Ach13g350901 | 5.68 | 21.90 | 195 | Chr13: 14397259.. 14398212(+) | 叶绿体Chloroplast |
AcHSP20-22 | Ach13g383281 | 6.31 | 16.61 | 152 | Chr13: 11985660.. 11986118(-) | 细胞质Cytoplasmic |
AcHSP20-23 | Ach13g472651.2 | 5.94 | 33.07 | 297 | Chr13: 1497079.. 1498061(-) | 叶绿体Chloroplast |
AcHSP20-24 | Ach14g205801.2 | 6.87 | 24.06 | 216 | Chr14: 9422059.. 9423375(+) | 叶绿体Chloroplast |
AcHSP20-25 | Ach14g205811.2 | 8.86 | 36.76 | 329 | Chr14: 9424474.. 9428179(+) | 叶绿体Chloroplast |
AcHSP20-26 | Ach15g376651 | 5.67 | 22.90 | 202 | Chr15: 4758959.. 4759567(-) | 细胞质Cytoplasmic |
AcHSP20-27 | Ach16g309411.2 | 7.64 | 26.14 | 231 | Chr16: 8508810.. 8510240(-) | 叶绿体Chloroplast |
AcHSP20-28 | Ach16g331111 | 8.83 | 17.36 | 153 | Chr16: 10507526.. 10508507(+) | 细胞质Cytoplasmic |
AcHSP20-29 | Ach18g165371 | 4.99 | 22.60 | 198 | Chr18: 8741760.. 8742825(+) | 细胞质Cytoplasmic |
AcHSP20-30 | Ach19g138461.2 | 5.08 | 13.25 | 114 | Chr19: 7272801.. 7273145(+) | 细胞质Cytoplasmic |
AcHSP20-31 | Ach22g015991.2 | 7.61 | 26.63 | 241 | Chr22: 8846412.. 8851047(-) | 叶绿体Chloroplast |
AcHSP20-32 | Ach23g121711.2 | 5.37 | 22.34 | 199 | Chr23: 4320454.. 4321535(-) | 细胞质Cytoplasmic |
AcHSP20-33 | Ach23g411051.2 | 9.11 | 33.06 | 300 | Chr23: 19087591.. 19088582(+) | 叶绿体Chloroplast |
AcHSP20-34 | Ach29g196461.2 | 4.59 | 9.84 | 85 | Chr29: 3710817.. 3711074(+) | 叶绿体Chloroplast |
Fig. 2 Chromosomal localization and synteny analysis of AcHSP20s A: Chromosomal localizations of 34 AcHSP20s in kiwifruit. B: Synteny analysis of 34 AcHSP20s in kiwifruit. C: Synteny analysis between 34 AcHSP20s in kiwifruit and 19 AtHSP20s in Arabidopsis
基因对Gene pairs | Ka | Ks | Ka/Ks |
---|---|---|---|
AcHSP20-7/AcHSP20-10 | 0.231 715 656 | 0.423 821 440 | 0.546 729 433 |
AcHSP20-7/AcHSP20-9 | 0.209 150 940 | 0.704 599 321 | 0.296 836 704 |
AcHSP20-10/AcHSP20-9 | 0.322 818 372 | 0.919 187 813 | 0.351 199 578 |
AcHSP20-18/AcHSP20-27 | 0.102 831 910 | 0.278 905 623 | 0.368 697 875 |
AcHSP20-20/AcHSP20-33 | 0.104 764 648 | 0.138 864 084 | 0.754 440 205 |
AcHSP20-23/AcHSP20-33 | 0.104 764 648 | 0.138 864 084 | 0.754 440 205 |
AcHSP20-21/AcHSP20-34 | 0.092 066 167 | 0.397 378 202 | 0.231 683 988 |
AcHSP20-30/AcHSP20-32 | 0.239 953 460 | 0.526 314 021 | 0.455 913 107 |
Table 3 Ka/Ks value of AcHSP20s
基因对Gene pairs | Ka | Ks | Ka/Ks |
---|---|---|---|
AcHSP20-7/AcHSP20-10 | 0.231 715 656 | 0.423 821 440 | 0.546 729 433 |
AcHSP20-7/AcHSP20-9 | 0.209 150 940 | 0.704 599 321 | 0.296 836 704 |
AcHSP20-10/AcHSP20-9 | 0.322 818 372 | 0.919 187 813 | 0.351 199 578 |
AcHSP20-18/AcHSP20-27 | 0.102 831 910 | 0.278 905 623 | 0.368 697 875 |
AcHSP20-20/AcHSP20-33 | 0.104 764 648 | 0.138 864 084 | 0.754 440 205 |
AcHSP20-23/AcHSP20-33 | 0.104 764 648 | 0.138 864 084 | 0.754 440 205 |
AcHSP20-21/AcHSP20-34 | 0.092 066 167 | 0.397 378 202 | 0.231 683 988 |
AcHSP20-30/AcHSP20-32 | 0.239 953 460 | 0.526 314 021 | 0.455 913 107 |
Fig. 4 Investigation of cis-acting elements in the promoters of AcHSP20s A: The locations of cis-acting elements of 34 AcHSP20s in kiwifruit. B: Numbers of 34 AcHSP20s cis-acting elements in kiwifruit
Fig. 5 Expression profiles of AcHSP20s in kiwifruit There are 3 biological and technical replicates, the standard error is on the bar graph, and lowercase letters indicate the difference among different samples. The same below
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