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Table of Content

    26 April 2019, Volume 35 Issue 4
    Cloning and Expression Analysis of CaCOX3 Gene from Pepper Cytoplasmic Male Sterile Line
    WANG Jiao, ZHANG Shui, ZHANG Jing-rou, SHAO Gui-fang, DENG Ming-hua
    2019, 35(4):  1-6.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0984
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    This work aims to explore the relationship between the encoding of the third sub-unit of cytochrome oxidase in the 4th complex subunit of mitochondrial respiratory chain(COX3)and the cytoplasmic male sterility(CMS)of pepper,for providing a reference in studying the relationship between pepper CMS and energy metabolism. Pepper cytoplasmic sterile line 9704A and maintainer line 9704B were used as material,CaCOX3 gene was amplified using specific primers based on the sequence of capsicum mitochondrial genome in GenBank. Its bioinformation and spatiotemporal expression were analyzed and the difference between 2 lines was compared. The cloned target CaCOX3 gene from the 9704A and the 9704B were consistent,the whole length was 798 bp,and encoded 265 amino acid residues. The expressions of CaCOX3 gene in different tissues of the 9704B were different:the highest in pericarp and the lowest in leaves. CaCOX3 gene expressed differently during the different developing periods of the bud of both lines. CaCOX3 gene expressions in the proliferative stage of sporogenetic cells and the meiotic stage of pollen mother cells of 9704A line were significantly lower than those of 9704B. The expressions in both lines were the same at the stage of microspore monocytes. The expressions in the CMS line was significantly higher than that in the maintainer line at the microspore maturation. In sum,the spatiotemporal expressions of CaCOX3 gene were different in the CMS line 9704A and the maintainer line 9704B,resulting in the abnormal energy metabolism and then infertility.
    The Related Transcriptional Factors in the Transcriptome of Mechanically-damaged Zoysia japonica
    ZHAO Fang-dong, ZENG Hui-ming
    2019, 35(4):  7-12.  doi:10.13560/j.cnki.biotech.bull.1985.2018-1052
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    This work aims to obtain differential genes(DEGs)related to AP2/EREBP,NAC,and WRKY transcription factors caused by mechanical damage. These three transcription factors were screened by converting the assembled sequences after transcriptome sequencing into Mapman-recognizable probe IDs,and were annotated from the Swiss-Prot and Nr databases in the transcriptome. Total 13 DEGs of AP2/EREBPs,8 DEGs of NACs and 11 DEGs of WRKYs were obtained. In contrast to control T7(Mechanically damaged 0 h),one DEG was down-regulated in AP2/EREBPs,NACs,and WRKYs at T8(Mechanically damaged 2 h)and T9(Mechanically damaged 6 h),respectively;whereas two DEGs of NAC showed up-regulated trend at T8 and down-regulated trend at T9,and the DEGs of other transcriptional factors were all up-regulated at T8 and T9. The database annotation indicated that AP2/EREBP and WRKY transcription factors enhanced the response to abiotic stress and biotic stress,i.e.,enhanced its stress resistance,when Zoysia japonica was damaged mechanically. Moreover,the NAC transcription factor transmitted signals to shoot apical meristem and regulated its growth.
    Embryonic Callus Induction of Sophora davidii and Their Somatic Embryogenesis and Germination
    WU Li-fang, WEI Xiao-mei, LU Wei-dong
    2019, 35(4):  13-19.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0828
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    This work is to investigate the effects of different factors on embryonic callus induction,somatic embryogenesis and somatic embryo germination from the hypocotyl and cotyledon of Sophora davidii. Having B5 and MS as the basic medium,the inductions of 2,4-D,6-BA and TDZ on embryonic callus from the hypocotyl and cotyledon of S. davidii,the proliferation of the embryonic callus in the MS medium supplied with different concentration of 2,4-D,and the effects of ABA on somatic embryogenesis were studied. The results showed that the embryonic callus induction from the hypocotyl more easily occurred than from cotyledon. The optimal medium for the embryo callus induction for two explants were MS+ 2.0 mg/L 2,4-D + 0.5 mg/L TDZ + 0.5 mg/L 6-BA,the induction rate was 77.3% and 41.0% respectively. The 15 mg/L ABA + 0.2 mg/L 2,4-D + 2.0 mg/L 6-BA was conducive to the somatic embryogenesis. The somatic embryo germination rate was up to 80% in the medium of 1/3 MS+ 0.2 mg/L NAA+0.1 mg/L 6-BA+2.0 g/L activated carbon+25 g/L sucrose+7g/L agar. The survival rate of transplanted seedlings reached 90%. In sum,the types of the explants and medium may affect the induction of embryonic callus,for which hypocotyl was better than cotyledon. MS medium is more suitable for initiating cell dedifferentiation to generate callus. 2,4-D may regulate the proliferation and maintenance of embryonic callus,and ABA is favorable for somatic embryogenesis.
    Isolation and Characterization of Gene DsKASIII from Dunaliella salina and Its Expression Under Nitrogen Stress
    GAO Hui-ling, LIU Bao-ling, GAO Yu, ZHANG Fei, XUE Jin-ai, LI Run-zhi
    2019, 35(4):  20-28.  doi:10.13560/j.cnki.biotech.bull.1985.2018-1015
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    This study is conducted to isolate and characterize the gene DsKASIII(β-ketoacyl-ACP synthase III)in Dunaliella salina and investigate the physiochemical features and functions of this enzymatic protein. Homologous cloning was used to isolate the encoding gene sequence of DsKASIII gene in D. salina,bioinformatics to analyze the physical and chemical properties and functions of DsKASIII protein,RT-PCR to examine the DsKASIII expression files in D. salina under nitrogen-deficiency stress,as well as the changes of total fatty acid and β-carotene contents were also tested in algal cells under N-deficiency and sufficiency cultivations,respectively. The results showed that DsKASIII gene contained 9 exons and 960 bp of ORF encoding a mature protein of 319 amino acids. The theoretical isoelectric point(pI)and relative molecular weight of DsKASIII were 6.21 and 33.3 kD,respectively. The protein was predicted to be located in chloroplast by anchoring the inner membrane with a mosaic pattern,and such conformation of the protein benefited the high-efficient catalysis reaction. Secondary structure of DsKASIII mainly consisted of α-helix(35.11%),β- sheet(25.71%)and random coil(27.90%). Three-dimensional simulations for DsKASIII showed that this protein can form a homodimer to perform its physiological functions. Phylogenetic analysis indicated that DsKASIII protein had the closest relationship with CeKASIII from Chlamydomonas reinhardtii,implying that they may have common evolutionary origin. Expression analysis by qRT-PCR showed that N-deficiency stress induced the up-regulation of DsKASIII gene,and the expression level of DsKASIII gene on the third day of the stress was 1.1 times higher than that of N-sufficiency culture. Compared to the N-sufficiency cultivation,N-deficiency resulted in the increase of the contents of total fatty acids and β-carotene in algal cells by 49.05% and 33.20%,respectively. In conclusion,the N-deficiency stress can induce the up-regulation expression of DsKASIII gene,thereby promote the biosynthesis and accumulation of oil and β-carotene in D. salina. The present data provide the scientific information for elucidating the mechanism underlying lipid and β-carotene biosynthesis and their regulations in D. salina under nitrogen stress.
    Screening,Identification of Biocontrol Bacterium R1B Against Rhizopus stolonifer and Analysis of Its Antagonistic Characteristics?
    WU Li-qin, SHANG Hong-zhong, GU Hai-ke
    2019, 35(4):  29-35.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0870
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    In order to control the soft rot of pear fruit,the antagonistic bacteria against Rhizopus stolonifer were screened from endophytes isolated from different plants,and their biocontrol efficiency was investigated. Plate confrontation method was used to screen the endophytes against R. stolonifer,inoculation pathogen on punched fruit methods was adapted to investigate the efficacy of R1B against pear soft rot,and its antimicrobial substances were preliminarily examined. As results,strain R1B isolated from Dendrobium huoshanense presented antagonistic activities against R. stolonifer,and was revealed as the closest relatives of Bacillus velezensis based on the biochemical characteristics and 16S rRNA gene sequence analysis. The growth of R. stolonifer treated with R1B was almost completely inhibited. The disease incidence of soft rot in the pears treated with strain R1B was totally inhibited,while the control ones completely rotted after 4 days of incubation. The genes of synthesizing antimicrobial peptide(AMP),bacA(bacylisin),ituC(iturin),bmyB(bacyllomicin),and fenD(fengycin),were detected in R1B. In sum,bacylisin,iturin and fengycin may be the antimicrobial substances produced by strain R1B. Results clearly suggest that strain R1B is a potential candidate for bio-controlling soft rot of pear fruit.
    Inhibitory Effects of AI-2 Quorum Sensing Inhibitors from Marine Lactic Acid Bacteria on Listeria monocytogenes
    HUANG Xiang-mei, WU Ya-qian, LIU Ying, LIANG Jia-ye, SU Wei-ming
    2019, 35(4):  36-42.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0934
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    The biofilm and virulence factors regulated by AI-2(Autoinducer 2)quorum sensing system are the main causes of high morbidity and mortality of Listeria monocytogenes. In this experiment,the luminescence value of the reporter Vibrio harveyi BB170 was used as the index to screen the AI-2 quorum sensing inhibitors(QSIs)of L. monocytogene from the metabolites of 16 marine lactic acid bacteria. The control effect of QSIs on L. m was evaluated by measuring its MIC value,growth curve,dynamic formation,and biofilm formation. The results showed that the ethyl acetate extracts from 6 strains of 16 marine lactic acid bacteria had a promising inhibitory effect on the AI-2 signaling molecule activity of L. monocytogene,accounting for 37.5% of the screened strains,and the inhibition rate reached over 75 %. Among them,the ethyl acetate extracts from strain Pediococcus pentosaceus zy-B-1 presented the highest inhibition rate(98.5%)and the MIC value to L. monocytogene was 250 μg/mL. As the concentration of QSI-B-1 increased,the inhibitory effect on the growth and dynamic formation of L. monocytogene was gradually strengthened,and the biofilm structure became more and more loose. This study provides a basis for screening the QSIs of L. monocytogene from the marine lactic acid bacteria.
    Identification of the Optimal Fluorescent Protein Reporter Gene in Methylobacterium extorquens AM1
    ZHU Li-ping, LIU Cong-cong, SONG Shu-zhen, DIAO Bin
    2019, 35(4):  43-50.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0892
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    Fluorescent protein has been a commonly used molecular marker in genetic engineering over the recent years,detailed interpretation of the expressions of different fluorescent protein genes in Methylobacterium extorquens is for identifying the most suitable fluorescent reporter gene. Genes of 5 fluorescent proteins,the frequently-used green fluorescent protein eGFP,red fluorescent protein mCherry,and yellow fluorescent protein YFP,as well as green fluorescent protein wGFP and red fluorescent protein RFP from other sources were cloned,the corresponding expression vectors were constructed,and their expressions in M. extorquens AM1 were achieved. Fluorescence protein expression in the transformants was identified via fluorescence imaging observation and SDS-PAGE protein gel electrophoresis. Furthermore,bacteria-growth curve,total fluorescence amount and relative fluorescence intensity were detected in all transformants to illustrate the fluorescence stability and expression intensity. As results,all target fluorescent proteins in the transformants were detected,while RFP expressed in a trace and no imaging was observed,and YFP presented the most stable and the highest relative fluorescence intensity as the 1.6 times of common eGFP,and 3.4 times of mCherry. In sum,YFP is the optimal fluorescent protein for M. extorquens AM1.
    Creation of Chimeric Protein Vip3AaAdAa in Bacillus thuringiensis and Analysis of Its Insecticidal Activity
    YU Shuang, LI Shuai, LI Hai-tao, LIU Rong-mei, GAO Ji-guo
    2019, 35(4):  51-56.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0929
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    Vip3A-type insecticidal proteins are a new class of insecticidal proteins. There is no homology in amino acid sequences with well-studied protein Cry,and the insecticidal sites are not competitive with insect receptor binding sites of Cry proteins. Homologous recombinant technique was used to study the insecticidal activity of Vip3Aa39 and inactive Vip3Ad against Spodoptera exigua. Three vip3AaAdAa chimeric genes were successfully created and were transformed into Escherichia coli to express chimeric protein Vip3AaAda1,Vip3AaAda2,and Vip3AaAda3. The insecticidal activities of these 3 chimeric proteins against S. exigua were determined. The results showed that the 3 chimeric proteins presented high insecticidal activities against S. exigua,the LC50 of Vip3AaAda3 protein was 1.4 times higher than that of Vip3Aa39,and the LC50 of Vip3AaAda1 protein was 2.7 times higher than that of Vip3Aa39. The insecticidal activities of chimeric proteins Vip3AaAda1 and Vip3AaAda3 were lower than that of Vip3Aa39,and the insecticidal activity of Vip3AaAdAa2 was not significantly different from that of Vip3Aa39.

    Distribution of Multidrug Resistant Bacteria in Qingdao Bathing Beach
    ZHANG Shu-ting, CHEN Sai-sai
    2019, 35(4):  57-63.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0863
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    In order to study the distribution,drug resistance and species of multidrug-resistant bacteria(MDRB)in the bathing beach,MDRB were screened by resistance screening plates,and their sensitivities to 15 common antibiotics were determined by K-B paper method,and the species of MDRB were identified by 16s rDNA sequence homology alignment. The results showed that 60(22.1%)MDRB were screened from 271 cultivable seawater bacteria,and their resistance rates to 15 drug-sensitive papers ranged from 31.6% to 81.7%;their resistance rates to sulfonamides,aminoglycosides and fosfomycin were high,and the highest(81.7%)to streptomycin. Correlation analysis between streptomycin,tetracycline-resistant genes and drug-resistant phenotypes demonstrated that the drug resistance of MDRB was significantly correlated with the detection rate of drug-resistant genes. The 60 strains of MDRB belonged to 24 genera,of which the genusStenotrophil accounted for the largest proportion(16%),followed by Microbacterium(13%),Pseudomonas(8%),Staphylococcus(8%). The experimental results reveal that the MDRB pollution in Qingdao bathing beach is serious and rich in diversity,and the MDRB present strong resistances to common antibiotics.
    Effect of Ethylene Glycol on the Expression of Exogenous Genes in Vivo
    WANG Qi-wen, LI Pan, Pan Cui-yun, HAN Fen-xia
    2019, 35(4):  64-68.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0675
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    This work aims to explore the effect of ethylene glycol on the expression of exogenous genes in mouse liver in hydrodynamics-based transgene. The pEGFP-C1 plasmid solution containing different concentrations of ethylene glycol was injected into the tail vein of mice by hydrodynamics-based transgene. The frozen slices of the right lobe of the mice liver were taken at 24 h,48 h and 72 h after the tail vein injection,and were observed with a fluorescence microscope at 488 nm excitation wavelength and the green fluorescent protein(GFP)expression was quantified. At the same time,hematoxylin staining was also carried out and the morphology of the mouse liver was observed. The positive cell rate of GFP at 24 h after transgenic tended to decrease with the increase of ethylene glycol concentration when the concentration of ethylene glycol ranged in 0.05-0.5 mol/L;while the positive cell rate of GFP at 72 h increased with the concentration of ethylene glycol,and was quite high at concentration of ethylene glycol of 0.5 mol/L. In conclusion,ethylene glycol may regulate the expression of exogenous genes in hydrodynamics-based transgene,and the expression peaks shift backwards.
    Molecular Characterization and Tissue Expression of cbx2 Gene in Paralichthys olivaceus
    WANG Xin-yan, ZHANG Jun-ling, SHI Zhi-yi
    2019, 35(4):  69-75.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0995
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    In order to identify the cbx2 gene of chromobox homolog(CBX)and its expression in the gonad of Paralichthys olivaceus,the cDNA sequence of cbx2 gene was obtained by PCR cloning and sequencing. The physicochemical properties and spatial structure of CBX2 protein were analyzed online by bioinformatics methods,and the gene structure,amino acid homology and phylogenetic evolution of cbx2 in vertebrates were compared. The expression of cbx2 gene in different adult tissues of P. olivaceus was detected by RT-PCR. The results showed that the obtained cbx2 cDNA had an open reading frame of 1 584 bp,encoding 527 amino acids in P. olivaceus,and the molecular weight and isoelectric point of the reduced protein was 56 578.98 and 10.03,respectively. The CBX2 protein was an alkaline and hydrophilic protein,had no signal peptide and no transmembrane area,and the amino acid encoding the protein had the highest content of serine(Sr). The spatial structure analysis revealed that the CBX2 protein was mainly composed of α-helix and random coil,and its secondary structure contained one chromatin domain and four low complexity regions,and the chromatin domain was often binding to methylated amino acids. The gene structure,amino acid homology,and phylogenetic analysis indicated that the cbx2 gene was more conserved in the evolution of vertebrate. The gene structure of cbx2 was more similar to that of Oreochromis niloticus and Oryzias latipes,and its amino acid homology was the highest with Seriola dumerili,which was 89%. The RT-PCR showed that the expression of cbx2 mRNA was the highest in the testis,the second one in the ovary,but quite low expressions in other tissues. All above results suggest that cbx2 gene plays a key role in the gonad development of P. olivaceus.
    SNP Identification of MyoD1 Gene and Its Correlation with Growth Traits in Pelodiscus sinensis
    HUANG Long, WU Ben-li, HE Ji-xiang, CHEN Jing, SONG Guang-tong, WANG Xiang, ZHANG Ye, WU Song
    2019, 35(4):  76-81.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0907
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    In order to study the correlation between DNA polymorphisms of MyoD1 gene and growth traits of P. sinensis,direct sequencing method was used and 6 SNP loci(T-49G,A-38G,C91T,A187T,C880T and T1522A)in P. sinensis MyoD1 gene were identified. Among them,one SNP(C880T)was located in exons and missense mutation happened. Randomly selecting 178 randomly 2-winter-age P. sinensis bred in the same batch and cultivated in the same rice field,the genotypes of each SNP locus of them were detected. The results showed that the average effective number of allele(Ne),average observed heterozygosity(Ho),and average expected heterozygosity(He)of these SNPs was 1.636 5,0.349 3 and 0.375 4,respectively. Chi-square test showed that 5 SNP loci(T-49G,A-38G,C91T,C880T,and T1522A)were in Hardy-Weinberg equilibrium state in P. sinensis population. A general linear model was established for correlation analysis between different genotypes at SNP loci of MyoD1 gene and various growth traits. At the locus of T-49G,individuals with the GG genotype had significantly greater carapace widths than ones with the TT genotypes. At the locus of A-38G,individuals with the AG genotype had significantly greater carapace widths than ones with the AA genotypes. At the locus of A187T,individuals with the TT genotype had significantly greater heights than ones with the genotype AA. At the locus of T1522A,individuals with the AA genotype had significantly greater body weights than ones with the TT and TA genotypes. Other three SNP loci were not significantly correlated with growth traits. The growth-related locus T-49G,A-38G,A187T and T1522A could be useful candidate molecular markers in P. sinensis molecular marker-assisted selection.
    mRNA Expressions of Hypoxia Inducible Factor Genes in Female Yak Reproductive System
    HE Xiang-dong, XIA Yi, JIGE Mo-ti, WANG Hui, ZI Xiang-dong
    2019, 35(4):  82-87.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0888
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    Hypoxia-inducible factor 1α(HIF-1α)and 2α(HIF-2α)are core regulators for inducing hypoxia genes and repairing cellular oxygen environment. This study aims to investigate the adaptation mechanism of the reproduction of yak living on the Qinghai-Tibet Plateau to the hypoxic environment. Hypothalamus,pituitary,oviduct,ovary and uterus tissue samples were collected from five adult and health female yaks and cattle during the follicular phase,respectively. Tissue expression characteristics of these genes were performed by RT-qPCR. The results showed that the mRNA expression level of HIF-1α in the oviduct was the highest,and was very significantly higher in the pituitary and oviduct in yak than in cattle(P<0.01). Meanwhile,the mRNA expression of HIF-2α was very significantly higher in the hypothalamus(P<0.01)and significantly higher in the ovary of yak than in cattle(P<0.05). These results suggest that female yaks maintain their reproductive function mainly by regulating HIF-1α and HIF-2α genes in the reproductive system under hypoxic conditions.
    Research Progresses on Plant NAC Transcription Factors
    WANG Fang, SUN Li-jiao, ZHAO Xiao-yu, WANG Jie-wan, SONG Xing-shun
    2019, 35(4):  88-93.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0905
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    NAC(NAM,ATAF1/2,CUC2)proteins are the superfamily of plant-specific transcription that are present in a wide range of species. Most of NAC proteins harbor a highly conserved DNA binding domain at the N-terminus consisting of approximately 150 amino acids and a flexible C-terminal domain being essential for transcriptional regulation. The NAC family members have been found to function in various processes including growth,development and stress response network;therefore,NAC transcription factors are continuously concerned. In recent years,especially in the past five years,groundbreaking discoveries in the functional research of NAC family members have achieved. Here,the progress of the plant NAC transcription factor function is reviewed,aiming at summarizing recent advances in NAC transcription factors and providing a reference for plant genetic improvement and breeding.
    Research Advances in Potassium Ion Channel AKT1 in Plant
    YANG Ling-qin, LIU Jing, LI Wei, DAI Liang-ying
    2019, 35(4):  94-100.  doi:10.13560/j.cnki.biotech.bull.1985.2019-0033
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    As one of 3 essential nutrients for plant growth and development,potassium(K)plays an crucial role in regulating enzyme activity,membrane potential,cell homeostasis,and protein stable synthesis. K+ uptake and transport in plant is via potassium channels and transporters. In recent years,different types of potassium channels have been isolated. The earliest discovered and most studied potassium channel is the Shaker potassium channel. This paper introduces the potassium channel in plant in aspects of its classification,the structural characteristics of the Shaker potassium channel,the effects of AKT1 on plant growth and development,the function of AKT1 under abiotic stress and biotic stress,and 2 internal regulation mechanisms of potassium channel AKT1 by CBL/CIPK phosphorylation and heteromerization. The paper also prospects the future issues in studying the potassium channel AKT1.

    Research Progress on Potato Starch Synthesis and Degradation
    HE Hu-yi, TANG Zhou-ping, YANG Xin, FAN Wu-jing, TAN Guan-ning, LI Li-shu, HE Xin-min
    2019, 35(4):  101-107.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0829
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    Potato is the fourth largest food crop in China and its total output accounts for 20% of the grain yield in the country. Potato is a C3 crop and its starch content is relatively low,which is related to its starch synthesis and degradation process. Enzymes related to potato starch synthesis include ADP-glucose pyrophosphorylase,granule-bound starch synthase,soluble starch synthase,starch branching enzyme,and starch debranching enzyme,while α-amylase,β-amylase,glucan water dikinase,phosphoglucan water dikinase,acid invertase,and neutral/alkaline inverstase are associated with the degradation of potato starch. Cloning potato starch synthesis and degradation genes is of great significance for genetic improvement of potato varieties. At present some cloned genes have been widely used in increasing starch content,modifying starch,and changing starch components in potato. This paper summarized the research progress on potato starch synthesis and degrading enzyme genes. Some suggestions have been put forward for future research,aiming at providing reference for future research on potato starch improvement engineering.
    Research Progress on Guide RNA in CRISPR/Cas9 System
    LI Jiang, GENG Li-zhao, XU Jian-ping
    2019, 35(4):  108-115.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0927
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    The CRISPR/Cas9 system,as a critical gene editing tool,has been used widely for the precise editing of genome sequences in a variety of organisms since its emergence,and it may generate the nucleotides deletion,insertion or replacement at specific targeted sites,thus changing the functions of encoding genes. Gene-editing technique based on CRISPR/Cas9 system will be applied into various biotechnology fields including biological breeding for producing a new generation of biotechnology products. Current research reports on CRISPR/Cas9 focus on the Cas9 protein structure and function,as well as the working principle of CRISPR/Cas9 system. As one of the critical components of CRISPR/Cas9 system,guide RNA is also the research hotspot in gene-editing technology fields,there are many article reporting that optimization of guide RNA resulted in the increase of editing efficiency and precision of CRISPR/Cas9. Therefore here we reviewed the research progress on guide RNA in CRISPR/Cas9 system,focusing on the sequence composition,structural characteristics and transcriptional ways of guide RNA,which is conducive to completely understand the characteristics of CRISPR/Cas9 system. Moreover,we discussed the effects of guided RNA on the gene editing efficiency of CRISPR/Cas9,which is beneficial in using CRISPR/Cas9 system. Finally,we prospected the future research trend of guided RNA,aiming at solving the current issues of using CRISPR/ Cas9 and optimizing the gene editing technology with higher efficiency and accuracy.
    Application of Meta-omics in Studying Microbial Community of Fermented Food
    TIAN Lu MIN, Jian-hong, ZHANG Di, GONG Guo-li
    2019, 35(4):  116-124.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0914
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    Fermented food is an important part of human diet,thus it is far-reaching significance to fully explore the microbial resources and promote the quality of fermented foods via thoroughly studying the microbial community structures,metabolisms and activity. With the advent of the post-genomics era,the rapid development of sequencing technology and the reduction of its cost,meta-omics mainly based on metagenomics,metatranscriptomics,metaproteomics and metabolomics has been applied to the diversity,structure and potential gene functions of microbial communities,laying a foundation for studying potential molecular mechanisms of fermented foods. This paper summarizes the techniques of meta-omics(metagenomics,metatranscriptomics,metaproteomics and metabolomics)used in fermented foods. Subsequently,the paper reviews the meta-omics study on the structure and function of microbial communities in cheese,fermented alcoholic beverages,fermented vegetables,fermented tea,fermented soy products and vinegar environment,and reveals rich sources of valuable genes and bioactive substances in fermented foods. It also briefly outlines the advantages of these technologies and the shortcomings of them at current stage,aiming at providing a reference for future research and industrial production of fermented foods.
    Application Progress on Aptasensors in Detection of Food-born Pathogenic Bacteria
    LI Xue-tong, LIN Ying, ZHANG Yuan, LI Ying, LÜ Shu-xia, XU Wen-tao
    2019, 35(4):  125-138.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0608
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    Nowadays,food security is the focus of public,and food-born pathogenic bacteria are one of the main causes of food safety events. Therefore,it is necessary to develop a rapid,sensitive and Low-cost method for detection and supervision of food-borne pathogenic bacteria. Aptamers are DNA/RNA oligonuleotide binding targets with high affinity and high specificity,which are obtained from a Library of single-stand random oligonuleotide in vitro by cell-SELEX. Due to the complex surface structures of food-borne pathogenic bacteria,SELEX-based technologies for aptamer selection have been being improved constantly. This review introduces some current modified-SELEX techniques,compares 10 characterization methods for aptamer binding affinity,and summarizes important aptamers of several common food-borne pathogenic bacteria,including DNA aptamer,RNA aptamer and split aptamer. Comparing with antibodies,aptamers possess numerous advantages. Thus,aptasensors,used for the detection of food-born pathogenic bacteria,have been rapidly developed in recent years,of which the electrochemical sensors and optical sensors are the most widely applied. At Last,this review focuses on the Latest progresses on the electrochemical aptasensors and optical aptasensors for food-borne pathogenic bacteria and proposes the development trend of aptasensors. This pioneers a new field for microbial detection techniques and further ensures food safety and public’s health.
    Research Progress on the Transformation of Magnetotactic Bacteria and Magnetosome Functionalization
    ZHOU Zi-qi, LI Shu-ting, TIAN Jie-sheng, HE Wan-chong, XU Wen-tao
    2019, 35(4):  139-150.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0269
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    Magnetotactic bacteria(MTB)are gram-negative bacteria that can move along magnetic field Lines under the action of an external magnetic field. The bacterial magnetosomes(BMs)in the bacteria are synthesized by MTB through biomineralization. BMs are arranged in chains within MTB and consist of outer membranes and internal magnetite crystals. BMs have the characteristics of uniform size,single magnetic domain,Large specific surface area,good biocompatibility,superparamagnetism and so on,and thus are widely used in the medical field. At present,MTB-based transformation methods are relatively few. And they are mainly biased to further transform the MTB by changing the morphology and composition of BMs. The functional strategies of BMs are relatively more and are mainly categorized into chemical and biological modification. This paper summarizes the basic features and screening techniques of MTB and BMs,focusing on the MTB transformation methods and the BMs functionalization strategies. Finally,the significance and existing problems of MTB transformation and BMs functionalization in practical applications are discussed,aiming at further promoting the practical application of MTB and BMs.
    A Review on Enzymatic Degradation and Transformation Mechanisms of Free and Conjugated Estrogens in the Environment
    YU Wei-wei, DU Bang-hao, ZHANG Min-ne, WAN Qiao-ling, YANG Shuo, ZHAO Chen-ju
    2019, 35(4):  151-162.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0944
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    Natural steroid estrogens(SEs)can be classified into free(FEs)and conjugated(CEs)ones in the environment. These ubiquitous SEs in the environment have caused damages to the diversity and stability of ecosystem due to the recognized varied interfering effects on human and wildlife endocrine systems. At present,multiple enzymes play an important role in the catalytic removal of both FEs and CEs in the environment. This review summarizes the removal mechanisms of FEs and CEs by oxidoreductases and hydrolases,respectively,and elucidates the main proposed enzymatic degradation and transformation pathways of both FEs and CEs. Oxidoreductases catalyze FEs to generate radicals and subsequently form poly-products by covalent bond(C-O-C and C-C)self- and cross-coupling;meanwhile,the catalytic process is easily affected by organic compounds in the environment. As for CEs,these compounds can be deconjugated into their corresponding FEs by deconjugating sulfate or glucuronide groups via hydrolases;additionally,CSEs are recalcitrant to be deconjugated and more stable in the environment compared to CGEs. This review also discusses and highlights the further application of enzymes for removing SEs in wastewater and soil,combined use of enzymes,immobilization of enzymes,enzyme engineering,and so on,aiming at providing a theoretical reference for the degradation and transformation of FEs and CEs by enzymatic catalysis in the environment.
    Current Status and Prospects of Fuel Ethanol Production
    CAO Yun-qi, LIU Yun-yun, HU Nan-jiang, HU Xiao-wei, ZHANG Yao, ZHAO Yu, WU Ai-min
    2019, 35(4):  163-169.  doi:10.13560/j.cnki.biotech.bull.1985.2018-1002
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    With the rapid development of social economy,problems such as energy shortage and environmental pollutions from the continuous consumption of fossil fuels have been increasingly prominent,thus seeking new green renewable alternative energy sources is imminent. Fuel ethanol,as an excellent fuel quality improver and clean renewable energy with advantages of abundant resources,less carbon deposit and GHG emissions mitigation,has become a green fuel being concerned and widely used at home and abroad. In this paper,the development of fuel ethanol production technology is reviewed via focusing on the source of raw materials,production technologies and the bottlenecks in the production of fuel ethanol in different stages,and the development trend was prospected. At present,production technology for fuel ethanol has mainly undergone three generations of development. The first generation of ethanol fermentation using corn and other food crops rich in sugary and starchy as raw materials has been commercialized,however,this causes food safety issue although the processes are mature. The second generation of ethanol production,using waste plant fibers such as crop straw as raw materials,has already met the industrialization demonstration conditions,and it has the most development prospect with the advantages of broad raw materials and constantly improving transformation technologies. The third generation of fuel ethanol using algae as raw material is in the stage of research and development,and it is the hope for the future energy development. Based on the above discussion of fuel ethanol production,its main technical bottlenecks and development trends are summarized,aiming at providing relevant theoretical basis for the industrialization,economization and sustainable development of fuel ethanol production.

    Research Progress on Dopa Decarboxylase and Its Correlation with Neuroendocrine Immune System in Invertebrates
    WANG Kai, LI Bo, YU Xiao-dong, LIU Rui-zhe, LIN Si-han, DU Jie, SHEN Xiu-li, DU Zhi-qiang
    2019, 35(4):  170-177.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0973
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    In nature,invertebrates develop and form a complete set of innate immune systems in order to resist the invasion of external pathogens. As a key enzyme in the innate immune system of invertebrates,dopa decarbox(DDC)not only participates in the regulation of the immune system,but also it-catalyzed neurotransmitters such as dopamine play an important role in the neuroendocrine system;thus it is an ideal material to study the neuroendocrine immune system of invertebrates. This paper first summarized the research status,protein molecular structure and catalytic mechanism of dopa decarboxylase in invertebrates,and then illustrated the important physiological function in the innate immune system of invertebrates. In addition,the paper outlined the neuroendocrine system in which dopamine is involved,further introduced The role of catecholamine system,dopamine,the role of dopamine and its receptors in neuroendocrine system is introduced. Dopamine decarboxylase exists widely in nature,and the research on it is also very rich. However,the domestic and foreign literature reports on dopamine decarboxylase in crayfish are very rare. P. clarkii is an invertebrate crustacean and it is an important aquatic product in China. In recent years,the yield of P. clarkii’s aquaculture is reduced due to infection from pathogenic bacteria. Bacterial diseases are the main cause of P. clarkii’s diseases. Therefore,to explore the defense mechanism of P. clarkii against bacteria is an important scientific issue that urgently needs to be solved;moreover,the study of dopamine decarboxylase in crayfish may provide scientific basis for the exploration of its neuroendocrine immune system.
    Research Progress on the Effects of T3SS Effectors on Apoptosis and Pyroptosis of Host Cells
    ZHU Ping, DU Li-jie, MENG Kun, XUE Juan, YANG Jin, LI Shan
    2019, 35(4):  178-187.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0897
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    Pathogenic bacterial infection causes a serious threat to human health. Pathogens that harbor a Type III Secretion System(T3SS)can inject effectors into host cells through T3SS and manipulate multiple signaling pathways,thereby facilitating the proliferation and dissemination of pathogens. T3SS effectors play important roles in the signaling pathways involved in apoptosis and pyroptosis of host cells. The effects of T3SS effectors on host have been widely investigated,the effectors of different pathogens exert similarly or differently functions,and the effectors of one species exhibit synergistic or antagonistic roles. Here,we reviewed the latest researches on the function and mechanism of T3SS effectors involved in cell apoptosis and pyroptosis,and made a summary and analysis. It aims to provide references and insight for intensively researching it,thus promoting research on the mechanism of pathogenic bacteria and providing theoretical basis of prevention and treatment of pathogens.
    Optimizing the Adsorption of Pb2+ on Modified Banana Peel Based on Response Surface Methodology
    WANG Yu-jie, WANG Xiang-jun
    2019, 35(4):  188-194.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0898
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    Modified adsorbent prepared by local agricultural and forestry waste banana peel in Hainan was used to study the efficacy of its absorbing heavy metal Pb2+ in wastewater. Based on the effects of single factor such as absorber dosage,adsorption time,the initial concentrations of Pb2+,and pH value on the adsorption rate,Box-Behnken response surface methodology was conducted to optimize the design and experiment. The results showed that the optimized condition of modified banana peel absorbing Pb2+ in wastewater by the response surface analysis was such:adsorption time 48min,absorber dosage 3 mg/L,the initial concentrations of Pb2+ 5.5 mg/L and pH 6,under which the adsorption rate reached 96.90%,and this was consistent with the predicted value 96.97%. Adsorption time,the initial concentrations of Pb2+ and the interaction between adsorption time and initial concentrations of Pb2+ affected extremely significant on the adsorption rate(P<0.001);pH had significant effects on the adsorption rate(P<0.05). The variance analysis of the model revealed that the P value was < 0.000 1.The regression equation of the model was very significant,it could be used to analyze the adsorption of Pb2+ by modified banana peel.
    Molecular Marker-assisted Selection in Melon Sex Expression
    FAN Lei, DAI Dong-yang, XIONG An-ping, SHENG Yun-yan, YU Ming-zhu, QIN Ying-cong
    2019, 35(4):  195-200.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0895
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    The objective of this study is to identify the sex type of melon via using A and G genes,and to provide a method for molecular marker-assisted breeding of other traits in melon. Based on the structures of the published CmACS-7(A)gene and WIP1+Gyno-hAT(G)gene in melon,PCR primers were designed,by which the detection of 47 recombinant inbred lines families and 14 melon materials was verified. Results indicated that PCR products from primer CmACS-7 was enzymatically digested at 383 bp,those with the genotype AA was not able to be digested by enzyme,and those digested by enzyme were in genotype aa,moreover,endonuclease locus discernible co-dominant genotype. Two primers were designed based on WIP1+Gyno-hAT gene structure,G(g)genotype was distinguished between 197 and 184 bp of the amplified bands. In conclusion,the self-designed primers can be used in the molecular marker-assisted selection breeding of monoecious,gynoecious,pure male line,and complete-flower melon at seedling stage.
    Establishment of Highly Efficient and Rapid Propagation System of Lycium ruthenicum for Multiple Genotypes
    DAI Feng-bin, LIU Li-ping, LI Ai-jia, RAO Shu-pei, CHEN Jin-huan
    2019, 35(4):  201-207.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0849
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    This work aims to establish an efficient and stable tissue culture regeneration system suitable for different provenances and multiple genotypes of Lycium ruthenicum Murr. and lay a foundation for planting-raising and large-scale popularization. The seeds of L. ruthenicum from 7 different provenances were collected and sterile seedlings were prepared. Plant tissue culture techniques were used to study the effects of different kinds and concentrations of plant growth regulators on the rooting and differentiation of L. ruthenicum. In the process of screening stem segment differentiation medium of L. ruthenicum,aiming at the vitrification phenomenon which is easy to appear in the culture process of L. ruthenicum,a medium suitable for the stem differentiations of multi-provenance and multi-genotype L. ruthenicum was determined through comparison of various media as such:MS + sucrose 30 g/L + agar 7 g/L + 6-BA 0.1 mg/L. A medium suitable for the leaf differentiation of multi-genotype L. ruthenicum was obtained as MS + sucrose 30 g/L + agar 6 g/L + NAA 0.5 mg/L + 6-BA 0.5 mg/L by adjusting the concentration of auxin and cell division while screening leaf-induced differentiation medium of L. ruthenicum. An optimal medium 1/2 MS + sucrose 30 g/L+ agar 7.5 g/L + IBA0.25 mg/L for the rooting of and multi-provenance and multi-genotype L. ruthenicum was determined by changing the concentration of auxin. Based on the large-scale experiments,the problems of vitrification,non-rooting,non-germination,etc.,which often occur during rooting and differentiation of Lycium ruthenicum from different provenances when using one medium,were overcome. In another word,an efficient and stable tissue culture and regeneration system suitable for multi-provenance and multi-genotype L. ruthenicum was established.

    A New Method for Identifying and Genotyping MSTN Gene-edited Cattle
    SU Qiu-ju, ZHOU Xiang, LI Guang-peng, BAI Chun-ling, XU Wen-tao, LIU Bang
    2019, 35(4):  208-212.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0748
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    Gene editing is a critical technique to generate genetically modified animals;however,it is hard to identify and genotype gene-edited animal because deleted fragment during editing is quite small. In this study,functional nucleic acid PCR(FNA-PCR)technique was established for identifying and genotyping MSTNgene-edited cattle. Based on 2 alleles for edited sites,2 different forward primers and one common reverse primer were designed. One forward primer was used to identify the allele of wild type samples,its 3'end was terminated at the edited site,and functional nucleic acid joint was designed to its 5'end. The other forward primer was used to detect MSTN gene-edited cattle in which the 3'end extended several nucleotides beyond the gene-edited site. This unique design allowed the amplified allele sizes of gene-edited and wild-type varied. By optimizing PCR reaction system and conditions,a novel FNA-PCR method,3 different genes were accurately genotyped in one PCR reaction,was established. FNA-PCR was high in sensitivity with detection limit 0.1 ng of MSTN gene-edited cattle genome DNA. In conclusion,FNA-PCR is a simple,accurate and rapid for identifying gene-edited animal and genotyping those small-fragment-deletion genes.
    Research Progress on the Bio-production of Chitin and Chitosan
    WANG Meng, LI Lan-peng, ZHANG Quan, PENG Shao-zhong, CAO Chang-hai
    2019, 35(4):  213-222.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0633
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    Chitin is another natural biopolymer after cellulose. Chitin and its derivative chitosan have been widely applied in agriculture,medicine,food processing,environmental protection and biotechnology due to the important physicochemical properties,admirable biodegradability,biocompatibility,and no toxicity. However,chitin is hard to be dissolved because of the strong hydrogen bond between chitin molecules,which limits its applications. Chitosan can be obtained from chitin by deacetylation,and the interaction force among chitosan molecules weakens due to the decrease of acetyl groups,which improves the solubility to a certain extent. Meanwhile,chitosan demonstrates more important economic value in drug slow-release,wound healing and other medical aspects,as the presence of a large number of free amino groups. In this paper,the traditional chemical method of preparing chitin,i.e.,acid-base method is described briefly;the method still is of many limitations and disadvantages,such as high energy consumption,high cost and serious environmental pollution,even though it is mature. Based on this,the environmental friendly enzymatic and microbial fermentation methods are summarized,their advantages and disadvantages are discussed respectively,the biological preparation methods of its important derivative chitosan are also summarized. The key issues in chitin/chitosan production from laboratory research to industrialization by biological method are analyzed,and finally the research directions of biological preparation methods for chitin/chitosan are further prospected.

    Optimization of Electrotransfection Conditions of Genes for Fusion Protein and Antibody to CHO-S Cells
    DENG Xiao-fen, YANG Xiao-jia, YI Tian-hong, FENG Ying, KE Xiao, LAI Wei-li
    2019, 35(4):  223-228.  doi:10.13560/j.cnki.biotech.bull.1985.2018-0700
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    The objective of this work is to optimize the conditions while recombinant plasmids encoding Fc-fusion protein and antibody transfect into CHO-S cells for improving the transfection efficiency and subsequently increasing the expression of exogenous proteins. The target genes were transfected into the CHO-S cells with Amaxa Nucleofector-II and the transfection conditions were screened from the 3 perspectives of electrotransfection programs,plasmid dosage and cell dosage. The optimized conditions for the Fc-fusion protein were found to be electroporation program U-030,plasmid dosage 20 μg/well,and cell dosage 1×107cells/well;while the optimized conditions for the antibody were electroporation program U-024,plasmid dosage 15 μg/well,and cell dosage 1×107 cells/well. It was found that the transfection efficiency for the gene of the antibody was higher than that for the gene of Fc-fusion protein,which was also demonstrated by the ratio of positive clone analyzed with Clone Pix. This study provides data on electrotransfection of genes for antibody and Fc-fusion protein to CHO-S cells,also indicating that the importance of optimizing the electroporation conditions for different cell lines and target genes for obtaining stable and high-yield producing cell lines.