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    26 April 2022, Volume 38 Issue 4
    Improvement of Crop Quality to Meet the Demands of the “Greater Food” Approach
    LIU Qiao-quan
    2022, 38(4):  1-3. 
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    Research Progress in the Inheritance and Breeding Improvement of Rice Quality
    LI Ran, QIAN Qian, GAO Zhen-yu
    2022, 38(4):  4-19.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1598
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    With the improvement of people’s living standard,high quality has become breeding aim of rice breeders and concern of consumers. Rice quality includes milling quality,appearance quality,eating and cooking quality,and nutrient quality. First,we reviewed the progress in studies on inheritance and breeding improvement of rice quality. Then we introduced the cloned genes related to rice quality or molecular function of QTLs for rice quality and their application in quality improvement. Based on this,we analyzed the issues encountered at present in rice quality inheritance and improvement prospected future research interests.

    Research Progress in Germplasm Innovation and Utilization of High Amylose Cereal Crops
    XU Miao-yun, XING Li-juan, YANG Ming-yu, ZHANG Ling-xuan, WANG Lei, LIU Yue-ping
    2022, 38(4):  20-28.  doi:10.13560/j.cnki.biotech.bull.1985.2020-1399
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    At present,the number of chronic diseases and diabetes caused by over nutrition and unbalanced nutrition is increasing year by year. More and more attention has been paid to development of food suitable for chronic patients as well as the design and breeding of organism varieties in functional agriculture. High resistant starch rice and wheat are considered to be very effective functional foods for chronic diseases,and high amylose maize is more widely used in industries. Based on the studies on the regulatory network and key genes of starch synthesis in cereal crops in recent years,it is found that the expression of starch branching enzymes in grains plays an important role in the accumulation of amylose,formation of resistant starch and the changes of nutrients and valuable metabolites such as fatty acids,amino acids and plant steroids. This article reviews the enzymes involved in starch synthesis and metabolism in the endosperm of cereal crops,the method of increasing amylose content,and germplasm innovation and utilization of high resistant starch rice and wheat,high amylose maize in China,and also prospects the future research direction.

    Research Progress in Absorption,Transportation and Accumulation Mechanism of Zinc in Rice
    XUE Xin-yue, YU Xue-ran, LIU Xiao-gang, MA Jia-xin, TIAN Lei, LI Pei-fu
    2022, 38(4):  29-43.  doi:10.13560/j.cnki.biotech.bull.1985.2020-1484
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    Zinc is one of the micronutrient elements necessary for the normal growth and development in rice,and is the auxiliary factor in biosynthesis of auxin,chlorophyll and other chemicals. Zinc deficiency can lead to drawf,slow growth of new leaves,chlorosis and white midrib in leaves,late and less heading,which seriously affects the yield. In addition,excessive zinc may cause toxic effects on rice. Therefore,it is of great significance to study the mechanisms of zinc absorption,transportation and accumulation in rice and to biofortificate the enrichment of zinc in rice grain by modern biotechnology. Based on the recent reports in domestic and abroad,this paper briefly reviewed the physiological function of zinc in rice,zinc absorption pathways in different tissues of rice,and factors affecting the absorption and accumulation of zinc. Further this paper sorted and summarized the types,structures and functions of zinc transporters,and their family members identified in rice in recent years,aiming to provide references for further understanding the zinc transport system and its regulatory mechanism in rice.

    Physiological and Biochemical Basis and Molecular Mechanism of Solanum tuberosum Tuberization
    LEI Chun-xia, LI Can-hui, CHEN Yong-kun, GONG Ming
    2022, 38(4):  44-57.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0065
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    Tuber induction and formation of potato(Solanum tuberosum L.)is the most pivotal event in their growth,development and determination of yield,which involves the interaction of multiple environmental factors with plant hormones and signal molecules,as well as the regulations of this interaction on large number of key genes and multiple signal transduction and metabolic pathways. This paper overviewed the physiological and biochemical basis of potato tuberization,including the process of tuberization and the endogenous factors and environmental conditions affecting the tuberization. Also the paper discussed the signal transduction pathways and regulatory roles of related genes,proteins,miRNAs,hormones and second messenger molecules in tuberization. Further a possible network of molecular interaction during tuberization was constructed;and finally directions and potential hotspots for future research were prospected,aiming to provide reference and new ideas for breeding potato varieties with high yield and good quality by precise molecular breeding in future.

    Application and Prospect of KASP Marker Technology in Main Crops
    YANG Qing-qing, TANG Jia-qi, ZHANG Chang-quan, GAO Ji-ping, LIU Qiao-quan
    2022, 38(4):  58-71.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1378
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    With the development of gene sequencing technology,plant genome data are becoming more and more abundant. Single nucleotide polymorphism(SNP)data are widely used in the development and application of molecular markers because of their high density,high throughput and easy automated analysis. Kompetitive allele-specific PCR(KASP)is a high-throughput genotyping technology mainly based on SNP. Because of its high flux,low cost and strong operability,this technology has great application potential in the field of crop character improvement. This paper introduces the development,principle and method steps of KASP technology,summarizes the application of KASP technology in genetic breeding such as germplasm resource identification,molecular marker assisted breeding,gene mapping and seed purity identification of main crops,and discusses the advantages and disadvantages of KASP technology in order to provide reference basis for crop breeding research in the future.

    Sequence and Tissue Expression Analysis of Monosaccharide Transporter Gene ShSTP7 in Sugarcane
    ZHAO Ting-ting, WANG Jun-gang, WANG Wen-zhi, FENG Cui-lian, FENG Xiao-yan, ZHANG Shu-zhen
    2022, 38(4):  72-78.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1537
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    Sugar transporter protein(ST)genes play important roles on yield formation and sugar accumulation in sugarcane(Saccharum spp. hybrids). The function analysis of ST genes facilitates to clarify the sugar accumulation mechanism and sugarcane genetic improvement. The ST gene ShSTP7 was isolated from sugarcane,and its biological characteristics,subcellular location and expression pattern of ShSTP7 were analyzed by bioinformatics software and techniques including RT-PCR,real-time PCR and protoplast subcellular location. The results showed that a sugar transporter gene ShSTP7 cDNA was isolated from sugarcane leaves. This gene was 1 619 bp length containing 1 557 bp open reading frame and encoded 518 amino acids. ShSTP7-encoded protein ShSTP7 belonged to facilitated diffusion superfamily and sugar transporter family. It had 12 transmembrane structures and sugar transport conserve domain. ShSTP7 was highly homologous with STP7 from S. spontaneum,Zay mays and Sorghum bicolor. The subcellular location analysis indicated that the green fluorescence signal of ShSTP7-GFP fusion protein appeared in the region of plasma membrane. The expression analysis of ShSTP7 demonstrated that it mainly expressed in sugarcane leaves and less expressed in sugarcane stalks. The expression of ShSTP7 in immature internodes 1-3 of high-sugar-content sugarcane cultivar was higher than that of low-sugar-content sugarcane cultivar. However,the expression of ShSTP7 in the leaves and internodes 4-24 of high-sugar-content sugarcane cultivar was lower than that of low-sugar-content sugarcane cultivar. These results indicate that ShSTP7 is a sugar transporter on plasma membrane uptaking sugars from apoplasmic space and plays an important role on sugar transport in sugarcane leaves,which lays a foundation in clarifying the gene function of monosaccharide transporters and its application.

    Gene Cloning and Expression Characteristics of Methionine Synthase METS in Maize
    REN Ying LIAN Tong ZHANG Chun-yi JIANG Ling
    2022, 38(4):  79-85.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1226
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    In plants,methionine is produced by methionine synthase(METS)using 5-methyltetrahydrofolate and homocysteine as substrates. Methionine synthase is the hub connecting methyl metabolism and one carbon metabolism. Cloning and expression analysis of METS coding sequence can provide basis information for the regulation of methionine- and folate- accumulation in maize(Zea mays)grains. The coding sequences of maize METS were cloned by RT-PCR,and its characteristics were analyzed by bioinformatics methods. The expression patterns in different tissues and during germination were detected by real-time quantitative PCR. Maize contained three homologous genes of ZmMETS1,ZmMETS2,and ZmMETS3 encoding methionine synthase,the gene length was 2 301 bp,2 298 bp and 2 298 bp,encoding 766,765 and 765 amino acids,respectively,and the protein molecular weights were all about 84.5 kD. All these three proteins contained two domains at N- and C-terminals. Each domain consisted of α helices surrounded by parallel β lamellae to form a stereoscopic structure. Phylogenetic tree analysis showed that 3 proteins were most similar to SbMETS in Sorghum bicolor. Expression analysis indicated that three ZmMETSs were expressed in all tissues of maize,and the highest transcription level was ZmMETS1. The transcription levels of three genes in ear were higher than those in other tissues. In addition,the transcription levels of ZmMETS1 and ZmMETS3 increased rapidly during germination and then decreased rapidly after germination. In conclusion,there are three constitutive expressed methionine synthase genes in maize. ZmMETS1 may play a role in ear development and germination.

    Genome-wide Characterization of KCS Gene Family in Brassica rapa and Their Expression Profiling in Waxy Near-isogenic Lines
    WANG Rong-hua, WANG Shu-bin, ZHANG Zhi-gang, ZHAO Zhi-zhong, LI Qiao-yun, WANG Li-hua, LIU Shuan-tao
    2022, 38(4):  86-96.  doi:10.13560/j.cnki.biotech.bull.1985.2022-0185
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    β-ketoacyl-CoA synthase(KCS)is a rate-limiting enzyme in the synthesis of very long chain fatty acids. Identification and analysis of KCS gene family lays a foundation for revealing the specific function in controlling the wax characters of Chinese cabbage(Brassica rapa). The members of Chinese cabbage KCS gene family were identified by bioinformatics method,and their genetic relationship,protein physical and chemical properties,chromosome location,collinearity,gene structure,protein conserved domain structure and gene expression pattern were analyzed. A total of 32 BrKCS gene members were identified from the whole genome of Chinese cabbage. Phylogenetic analysis indicated that these BrKCS genes were divided into 4 subgroups,which were unevenly distributed on 10 chromosomes. The amino acid length and molecular weight of BrKCS proteins ranged from 181 to 755 aa and 20.54 to 84.83 kD,respectively. Collinearity analysis showed that 7 family members such as BrKCS5,BrKCS8 and BrKCS13 doubled with the BrKCS gene of Arabidopsis,and one family member(BrKCS9)tripled. Gene structure analysis showed that the number and location of exons of amino acid sequences encoded by different members were different. Transcriptome analysis showed that BrKCS5,BrKCS6b and BrKCS10b genes played an important role in controlling waxy characters in different organs/tissues of Chinese cabbage,especially in flower organs. qRT-PCR analysis verified the reliability of transcriptome data. In conclusion,a total of 32 BrKCS were identified from the whole genome of Chinese cabbage,of which three genes were highly expressed and significantly different in waxy near-isogenic lines,laying a foundation for analyzing the molecular mechanism of BrKCS gene in controlling Chinese cabbage wax traits.

    Regulation of Shoot Branching by BRANCHED1 in Brassica napus Based on Gene Editing Technology
    Olalekan Amoo, HU Li-min, ZHAI Yun-gu, FAN Chu-chuan, ZHOU Yong-ming
    2022, 38(4):  97-105.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1344
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    Plant architecture depends on shoot branching patterns,thus the improvement of shoot branching pattern is an efficient way of increasing crop yield. However,the molecular mechanism of shoot branching in rapeseed(Brassica napus L.)is not properly understood yet. Also,genetic resources for the improvement of plant architecture in agricultural crops are lacking. In the present study,we conducted the successful application of CRISPR/Cas9 genome editing technology for the targeted mutation of BRANCHED1BRC1)in rapeseed. The transformed seedlings were acquired using the Agrobacterium-mediated transformation and the transgenic positive plants were selected using PCR. Hi-TOM sequencing analysis was performed to detect the sequences site-targeted mutated genes. The results demonstrated that the induced mutations were heritably transmitted to successive generations. Phenotypic observation of the obtained mutants showed that the double-copy homologous mutants from the BnaC01g34090 and BnaA01g26700D of BRC1 gene presented significant much shoot branching. Collectively,our results revealed that BnaBRC1 is involved in the shoot branching and in the regulation of plant architecture,thus providing the critical study materials to understant the mechanisms involved in the regulation of plant architecture in B. napus.

    Cloning and Functional Identification of BnNF-YA1 in Brassica napus L.
    LIN Ke-yun, DUAN Yu-jing, WANG Gao-sheng, SUN Nian-li, FANG Yu-jie, WANG You-ping
    2022, 38(4):  106-116.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0959
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    NF-YA is one of the three subunits of NF-Y(nuclear factor Y)transcription factors,which is involved in plant growth and development,stress response,and interaction with microorganisms in plants. The bioinformatics and expression pattern analysis of cloned BnNF-YA1 were carried out. The coding sequence of the BnNF-YA1 was isolated and cloned. The overexpression vector of the BnNF-YA1 was constructed and transformed into rapeseed. The positive transgenic plants were identified,and the performances of the transgenic plants overexpressing BnNF-YA1 under stress treatments were evaluated. The results showed that the length of open reading frame of BnNF-YA1 was 858 bp,encoding 285 amino acids. Tobacco-transient expression analysis uncovered that BnNF-YA1 protein was localized in the nucleus. Biochemical analysis using yeast system showed that there was no transactivation activity in BnNF-YA1 full-length protein. Expression analysis revealed that the transcript abundance of BnNF-YA1 was induced by PEG treatment,and BnNF-YA1 showed a relatively high expression in the seedling leaf,bud,and 20 DAP silique. The overexpression of BnNF-YA1 increased the tolerance of transgenic rapeseed plants to PEG and methyl viologen(MV)treatments,suggesting that BnNF-YA1 may be involved in regulating the responses of rapeseed to osmotic and oxidative stress.

    Component Analysis of SCFSLF Complex in Diploid Potato
    GAO Meng, LI Fu-ting, WEI Zhan-lin, ZHANG Sai-hang, BAI Ru-qian, SHANG Yi, MA Ling
    2022, 38(4):  117-125.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0904
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    Self-incompatibility (SI) exists widely in flowering plants,which is a way to prevent inbreeding and promote hybridization,and may effectively maintain the genotypic diversity of species. The type of SI in Plantaginaceae,Solanaceae,Rosaceae and other plants belongs to the typical gametophytic self-incompatibility (GSI). In the cross-pollination of GSI plants,the SCFSLF complex (Skp1/Cullin1/F-box) in the pollen tube,as the E3 ubiquitin ligase,is involved in the degradation of S-RNase,which is the key factor to maintain the crossing compatibility. This study summarized the research progress of SCFSLF complex in GSI plants,and preliminarily analyzed the components of SCFSLF complex in diploid potato by homologous alignment,phylogenetic analysis and multiple protein sequence alignments. The gene expression and protein interaction of each component were analyzed,and it was preliminarily determined that the SCFSLF complex in potato pollen tube may be composed of Soltu.DM.06G001040,Soltu.DM.11G004330,Soltu.DM.06G022320 and the corresponding SLF proteins.

    Identification of Low Temperature Stress-responsive Genes Regulating Photosynthetic Characteristics in the Leaves of Brassica napus by RNA-Seq
    JIN Jiao-jiao, LIU Zi-gang, MI Wen-bo, XU Ming-xia, ZOU Ya, XU Chun-mei, ZHAO Cai-xia
    2022, 38(4):  126-142.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1048
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    In order to clarify the response of photosynthetic characteristics to low temperature stress in Brassica napus L.,using cold-resistant material 17NS and cold-sensitive material NF24 as study object,Illumina HiSeqTM 2000 platform was applied to have RNA-Seq analysis,the molecular mechanism of B. napus responding to low temperature,such as leaf morphology,photosynthetic parameters,leaf ultrastructure and gene regulation expression pattern treated at -4℃ for 24 h was investigated. The results showed that the photosynthetic pathway and the photosynthesis-antenna protein pathway were significantly enriched in B. napus in response to low temperature stress. In these two pathways,64 genes were specifically expressed,including 8 up-regulated genes and 56 down-regulated genes,most of which were noted in molecular composition and biological process. It was confirmed that photosynthesis was related to leaf wilt,chloroplast number and morphology change,thylakoid structure damage and relative electrolyte permeability increase. qRT-PCR analysis showed that the expression patterns of the first 17 DEGs were consistent with RNA-Seq analysis results,confirming the reliability of RNA-Seq results. BnFd1LOC106350097)and BnCP26LOC106440450)were up-regulated in response to cold stress. The amino acid product encoded by BnFd1was the chloroplast ferridoretin 1(BnFd1),an unstable hydrophilic protein,which were located in the chloroplast and cytoplasm,there was a signal peptide,belonging to the PLNO3136 superfamily and had a conserved Fd1 domain. The amino acid product encoded by BnCP26 was the chlorophyll a-b binding protein CP26(BnCP26)on thylakoid,it was a stable hydrophilic protein located in chloroplast without signal peptide,and belonged to the chlorophyll a_b binding superfamily and had a conserved chlorophyll a-b binding protein domain. Two cold response genes BnFd1 and BnCP26 are successfully identified in B. napus L.,which are closely related to the regulation of photosynthetic characteristics and had conserved interspecies functions.

    Alleviation Mechanisms of Zinc-selenium Interaction on the Cadmium Toxicity in Rice Under Cadmium Stress
    HU Yan-jiao, CHEN Mei-feng, QIANG Yu, LI Hai-yan, LIU Jing, QIN Fan-xin
    2022, 38(4):  143-152.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1127
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    This work aims to study cadmium Cd,zinc(Zn),selenium(Se)and various combinations of them on the germination of rice seeds,growth and development of plants,and the Cd contents in different parts,as well as to explore the alleviation mechanisms of Zn or Se or Zn-Se interaction on the toxicity of Cd in rice. Having rice variety Nanjing 9108 as study object,germination and hydroponic experiment were conducted to measure the germination,growth,physiological indexes and Cd content in different parts. The experimental results showed that seed germination was promoted at low concentration of Cd,while inhibited at high concentration. The inhibitory effects of Cd on the physiological indexes of rice seeds were alleviated after Zn added,and accumulation of Cd was reduced. Instead,the inhibitory effects of Cd on the physiological indexes of rice seeds were not alleviated after Se added,and high concentration of Se increased the toxicity of Cd on the seeds and led to the physiological indexes of seeds reduced. The synergistic application of Zn and Se promoted seed germination,but did not facilitate the growth of rice seedlings. Under 5 mg/L Cd stress,adding Zn or Se at different concentrations both significantly increased the lengths of roots,the heights of seedlings,relative water contents of leaves and the value of SPAD,alleviated the toxicity of Cd to rice growth and development,as well as significantly reduced Cd contents in the roots of rice. The heights of seedlings and SPAD decreased dramatically,and lengths of roots and relative water contents did not change observably after Zn and Se were added together. Therefore,appropriate concentration of Zn and Se may effectively decrease the Cd accumulation in rice,and reduce the toxicity of Cd to rice.

    Regulatory Role of Burkholderia sp. GD17 in Rice Seedling’s Responses to Cadmium Stress
    ZU Guo-qiang, HU Zhe, WANG Qi, LI Guang-zhe, HAO Lin
    2022, 38(4):  153-162.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0915
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    This work is to explore the regulatory role of Burkholderia sp. GD17 in the response of rice to cadmium(Cd)stress,thus laying a foundation for reducing Cd accumulation and increasing the Cd-tolerance of rice plant. GD17-inoculated(+GD17)and non-inoculated plants with Cd addition were used as study material,and their physiological and biochemical parameters,and gene expression were analyzed. The number of GD17 reached 3.6×106 CFU/g of fresh root at 5 d after inoculation,and maintained a certain size of the endophytic population during plant growth. Following exposure to Cd(20 and 40 mg/kg soil)for 20 d,the dry and fresh weights of the shoots and roots of GD17-innoculated(+GD17)plants significantly were higher than that of non-inoculated seedlings. There was no significant difference in Cd contents of the roots between +GD17 and non-inoculated rice plants,while Cd content in the +GD17 shoots was only 43% of that in the non-inoculated ones. The contents of malondialdehyde in the roots and leaves of shoots of +GD17 rice plants were the 78% and 64% of those in non-inoculated plants under Cd stress. The activity of superoxide dismutase markedly decreased in the +GD17 shoots than in the non-inoculated ones,but the activities of peroxidase and catalase increased. GD17 addition efficiently inhibited the damages from photosynthesis,such as reduced the decrease of total chlorophyll content,net photosynthetic rate and stomatal conductance,and the increase of the intercellular CO2 concentration from Cd stress. The Cd-induced photosynthetic impairment and GD17-conferred restorative effect were also reflected on the changes of revealed by chlorophyll fluorescence parameters. The expressions of the genes related to Cd absorption,chelation,transport,and vacuolar sequestration presented a higher level in the roots of +GD17 plants than in non-inoculated ones. These data suggest that root inoculated with GD17 may systematically alleviate Cd damage to rice seedlings,and the involved mechanisms might be associated with reducing root-shoot transport of Cd,regulating antioxidant defense from Cd,preventing Cd-induced photosynthetic impairment,and increasing the expressions of Cd tolerance-related genes. This work provided a scientific basis for the potential application of GD17 strain in low-Cd rice production.

    Identification of Tomato 4CL Gene Family and Expression Analysis Under Nitrogen Treatment
    MA Xin-xin, XU Yang, ZHAO Huan-huan, HUO Zhao-yan, WANG Shu-bin, ZHONG Feng-lin
    2022, 38(4):  163-173.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1272
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    The objective is to explore the basic physical and chemical properties,molecular evolution characteristics of tomato 4CL gene family and its expression pattern under different concentrations of nitrogen. The whole genome of tomato 4CL gene family members were identified,analyzed by bioinformatics methods,and verified by qPCR under different concentrations of nitrogen treatment. As results,a total of 6 4CL gene family members were identified in tomato(Solanum lycopersicum),all members were stable proteins,5 members belonged to acidic protein and the number of amino acids encoded by 4CL genes in tomato ranged from 538 aa to 957 aa. The secondary structure was mainly random coils,and the tertiary structure except for Sl4CL04 used 5bsw.1.A as the model,the other members all used 5bsr.1.A as the model. The number of introns in the tomato 4CL gene family was 5-11. The 12 Motifs were very conserved in order and position in Sl4CL,and had high homology. Cis-acting elements analysis indicated that MYB binding sites were the most widely distributed in the promoter region. The expression levels of the 6 genes were significantly different under different concentrations of nitrogen. The overexpression vector was constructed for Sl4CL03,and the subcellular localization results showed that it was located in peroxisome,chloroplast and cytoplasm. In conclusion,the evolution of the tomato 4CL family is conservative and specific,and can be regulated by related mechanisms during nitrogen treatment.

    Screening of Salt-tolerant Soybean Germplasm and Physiological Characteristics Analysis of Its Salt Tolerance
    SHI Guang-cheng, YANG Wan-ming, DU Wei-jun, WANG Min
    2022, 38(4):  174-183.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0843
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    Salt injury is a major abiotic stress,which seriously affects the yield and quality of soybean. Thus it is important to screen soybean salt-tolerant germplasm for the study of salt-tolerance. In this study,332 cultivated soybean varieties were used as the research objects,and their salt tolerance was preliminarily evaluated using the lethal concentration of NaCl at seedling stage as the evaluation index. Three materials with different salt tolerance levels were selected as the experimental materials,and the recognized salt-tolerant material Lee68 and salt-sensitive material Jackson were selected as the control material. After treatment with 150 mmol/L NaCl solution,phenotypes,physiological indexes and photosynthetic indexes were determined to analyze the relationship between different salt tolerant germplasm and these indexes,so as to further explore the salt tolerance mechanism. The results showed that:1)There were great differences in salt tolerance of the germplasm tested. Six salt-sensitive varieties and 18 salt-tolerant varieties were screened out. 2)Morphological analysis showed that the plant dry weight,plant height and root length of the varieties with different salinity tolerance levels all decreased under salt stress. The relative dry weight,plant height and root length of Fendou105 and Lee68 were higher,followed by Jinda70,Shanxibayuehang and Jackson were lower. 3)Analysis of ion content in different tissues showed that the accumulation of Na+and Cl- in the roots and stems of Fendou 105 and Lee68 was higher than that in the leaves,while it was opposite for Shanxibayuehang and Jackson. 4)The photosynthetic characteristics of leaves showed that under salt stress,the SPAD of Shanxibayuehang and Jackson decreased,while that of Jinda70,Lee68 and Fendou105 increased. The net photosynthetic rates of Fendou105 and Lee68 decreased less,while those of Shanxibayuehang and Jackson decreased more. Based on morphological and physiological analysis,the salt tolerance of 5 soybean varieties under salt stress was found to be as Fendou105 and Lee68>Jinda70>Shanxibayuehang and Jackson,which were consistent with the preliminary screening results. The results indicated that the lethal concentration could be used as a simple and reliable indicator for the identification of salt tolerance at seedling stage. Meanwhile,these materials provide basic materials for soybean salt tolerance breeding.

    Molecular Cloning and Characterization of an Acetolactate Synthase Gene(CeALS)from Cyperus esculentus L.
    XIAO Yan-hua, ZOU Zhi, ZHAO Yong-guo, GUO An-ping, ZHANG Li
    2022, 38(4):  184-192.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1198
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    Acetolactate synthase(ALS)plays an important role in the herbicide resistance of plants. To uncover the sequence characteristics,evolutionary relationship,and expression pattern of the ALS gene in tigernut(Cyperus esculentus L.),in this study,RT-PCR was adopted to isolate the corresponding gene CeALS on the basis of transcriptome data. Sequence analysis revealed that CeALS putatively encoded 646 amino acids with a theoretical molecular weight of 69.94 kD and an isolectric point of 6.10,which was predicted to be a hydrophilic protein with chloroplast localization. The protein was shown to harbor three conserved domains,i.e.,TPP_enzyme_N,TPP_enzyme_M,and TPP_enzyme_C,which were specific to acetolactate synthase. Homologous analysis suggested that CeALS shared an identity of >90% with homologs from other Cyperaceae plants. Phylogenetic analysis supported that Cyperaceae was a sister family to Poaceae within Poales. qRT-PCR analysis revealed that CeALS was mainly expressed in mature leaves and tubers. During leaf development,an increasing trend was observed and the expression level in mature and senescent leaves was significantly higher than that in young leaves. Sequence alignment and SNP analysis supported that no target site resistance mutations to acetolactate-synthase-inhibiting herbicides were found in 56 germplasms collected by our group. Results obtained in this study lay a solid foundation for molecular breeding for herbicide resistance as well as development and utilization of tigernut.

    Cloning and Functional Analysis of GhERF5-4D Gene Related to Fusarium oxysporum Resistance in Cotton
    ZHAO Zeng-qiang, GUO Wen-ting, ZHANG Xi, LI Xiao-ling, ZHANG Wei
    2022, 38(4):  193-201.  doi:10.13560/j.cnki.biotech.bull.1985.2021-1065
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    To study the role of ERF (ethylene responsive factor) transcription factor gene GhERF5-4D in cotton Fusarium oxysporum resistance may lay a foundation for the study of cotton disease resistance molecular mechanism and cotton disease resistance breeding.Firstly,the differentially expressed genes obtained from the gene expression profile in cotton root tissues induced by F. oxysporum were employed as probes,based on the whole genome database of upland cotton,the ERF transcription factor gene GhERF5-4D was selected as a candidate gene. Then,the expression characteristics of GhERF5-4D under F. oxysporum and multiple hormones treatment,and its roles in cotton disease resistance were investigated via qRT-PCR and virus induced gene silencing (VIGS)techniques. GhERF5-4D gene(GenBank accession number :MF093148),located on the chromosome D07 of upland cotton,its open reading frame(ORF)was 663 bp encoding 220 amino acids. There was only one AP2 domain in its coding regions without any introns and belonged to the ERF subfamily. Its expression patterns in resistant and susceptible cotton cultivars and inoculation by hormones were significantly distinct,which was up-regulated in resistant varieties and down-regulated in susceptible cultivars,up-regulated after ethylene and methyl jasmonate treatment and down-regulated after salicylic acid tratment. When GhERF5-4D gene was silenced by VIGS and then inoculated with F. oxysporum, the silenced strains showed more susceptible to disease than the control. Moreover,the relative expressions of PR2, PR4, PR5, NPR1 and ERF1 genes were lower than those of control groups,while,the relative expression of WRKY70 gene was higher than that of the control. Thus,GhERF5-4D gene was confirmed to respond to F. oxysporum stress and improve cotton resistance to F. oxysporum by regulating downstream defense genes through ethylene and jasmonic acid pathway.

    Cloning and Expression Analysis of NAC Transcription Factor PmNAC8 in Pinus massoniana
    HAO Qing-qing, YAO Sheng, LIU Jia-he, CHEN Pei-zhen, ZHANG Meng-yang, JI Kong-shu
    2022, 38(4):  202-216.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0830
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    NAC(NAM,ATAF1/2,CUC2)family of genes are involved in regulation of plant growth and development,abiotic stress response and hormone signal transduction. Studying the responses of NAC transcription factors in Pinus massoniana to abiotic stress would provide theoretical basis for elucidating gene function. A NAC family’s gene from P. massoniana was cloned by RT-PCR and RACE techniques,and then analyzed by bioinformatics. And the expression patterns in different tissues and its responses to stresses were detected by qRT-PCR. Using genomic DNA as a template,the upstream promoter region of the gene was cloned by the genome walking techniques. By agrobacterium injection of Nicotiana benthamiana,the subcellular localization was observed. The full length of the gene was 1 726 bp and open reading frame was 1 209 bp,encoding 402 amino acids,and named as PmNAC8. GenBank accession number is MZ291447. Subcellular localization showed that the gene was located in the nucleus and the codon usage bias was low,it preferred to use the codon ending in A/T,and tobacco and Accharomyces cerevisiae are more suitable as heterologous expression receptor materials for PmNAC8. The qRT-PCR demonstrated that PmNAC8 was expressed in all tissues of P. massoniana,and the highest expression was found in the root,and was induced by mechanical damage and plant hormones GA and ABA. The 1 492 bp promoter region upstream of PmNAC8 contained multiple stress components,gibberellin control components and light response components. These results suggest that PmNAC8 is a transcription factor involved in various stresses and may play an important role in gibberellin signaling.

    Construction of Microbial Consortium for Efficient Degradation of Corn Straw and Evaluation of Its Degradation Effect
    WANG Xin-guang, TIAN Lei, WANG En-ze, ZHONG Cheng, TIAN Chun-jie
    2022, 38(4):  217-229.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0968
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    In response to the problems of difficult degradation and low utilization rate of corn straw,the efficient degradation microbial consortium HD composed of Bacillus subtilis WF-8,B. lincheniformis WF-11,B. cereus WS-1 and Streptomyces nogalater WF-10 was constructed,then the degradation effect was evaluated,which provided theoretical basis for the research and development of microbial compound agents of efficiently degrading corn stalk. Single factor experiment,orthogonal experiment and response surface method were combined to optimize the enzyme production medium and fermentation conditions of the microbial consortium HD. And experiments of liquid and solid fermentation were conducted to evaluate the degradation effect of the microbial consortium HD on corn straw. The results showed that the optimal carbon and nitrogen sources of microbial consortium HD were straw powder and(NH42SO4,the optimal addition amounts were 15 and 4 g/L. And the optimal fermentation conditions were as follows:temperature 34℃,inoculating amount 5%,fermentation time 6 d and initial pH 7.2. Under this condition,the cellulase activity was 164.21 U/mL,1.9 times higher than that before optimization,which was significantly higher than that of a single strain. After inoculating the microbial consortium into liquid fermentation medium and solid fermentation medium,the degradation rate reached 47% and 63.6%,respectively;and the degradation rate was significantly higher than that of the single strain and control groups. The results indicate that the microbial consortium HD has great potential in the degradation of corn straw,which lays a foundation for the research and development of microbial consortium agents for the efficient degradation of corn straw.

    Effects of Trichoderma longibrachiatum on Maize Growth,Soil Fertility and Rhizosphere Microorganism
    ZHU Jing, YU Cun
    2022, 38(4):  230-241.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0704
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    In order to explore the application effect and mechanism of Trichoderma longibracteatus fertilizer in maize cultivation,3 treatments,YJ(0.01 g bacterial fertilizer per g soil),YF(0.07% chemical fertilizer)and YD(0.01 g bacterial fertilizer matrix per g soil),were set up by pot method. The growth,physiology,soil nutrients,soil enzyme activities and rhizosphere microbial community of maize under different treatments were measured. The results showed that YJ and YF treatments significantly promoted the growth of maize,and there was significant difference between them and YD treatment(P<0.05),but there was no significant difference between YJ and YF treatment (P>0.05). Compared with YD treatment,YJ and YF treatment increased maize seedling height,root length,aboveground dry weight,underground dry weight,aboveground fresh weight and underground fresh weight by 44.65% and 39.87%,75.74% and 71.25%,83.33% and 33.33%,300% and 150.00%,101.85% and 55.56%,356.67% and 130.00%,respectively. Compared with YD treatment,YJ and YF treatment improved the physiological indexes of maize,and YJ treatment had more obvious promoting effect on the physiological indexes of maize(P<0.05). Both YJ and YF treatments increased soil nutrients and soil enzyme activities in maize rhizosphere,and YJ treatment increased more than YF treatment. The results showed that YJ treatment increased the number of fungal OTU and reduced the number of bacterial OTU in maize rhizosphere soil(P<0.05). YF treatment increased the number of bacterial OTU in rhizosphere soil,but decreased the number of fungal OTU. In conclusion,compared with chemical fertilizer,T. longibracteatus fertilizer has a more obvious positive effect on maize growth,physiology,soil nutrients,soil enzyme activity and soil microbial community. It is expected to replace chemical fertilizer in whole or in part in the future,and reduce the consumption of inorganic chemical fertilizer while promoting maize growth.

    Screening of Endophytic Bacteria from Rehmannia glutinosa at Different Stages and Analysis of Their Growth-promoting Characteristics
    WANG Chun-yan, LA Gui-xiao, SU Xiu-hong, LI Meng, DONG Cheng-ming
    2022, 38(4):  242-252.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0964
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    The development of dominant strain resources from Rehmannia glutinosa and the analysis of growth promoting characteristics will provide a basis for the development of special growth-promoting bacterial fertilizer for R. glutinosa microorganisms. Dilution plate method was used to classify the endophytic bacteria isolated from the roots,stems and leaves of R. glutinosa at different stages to their morphologies,physiologies and biochemistries and 16S rRNA analysis. And the selected 54 strains of endophytic bacteria were evaluated based on their IAA-yielding capacities,iron-carrier activities,P-dissolving capacities,and N-fixing capacities. The results showed that 512 strains of endophytic bacteria were isolated in different periods and classified into 54 groups. One strain in each group was selected for detection,of which 41 strains had the ability to produce IAA;29 strains of them had the ability of dissolving phosphorus;28 strains had the ability to produce iron carrier;and 25 strains had nitrogen fixation ability. This result provides a reference for the study of special microbial growth-promoting bacteria fertilizer for R. glutinosa,and lays a foundation for the subsequent application of microbial growth-promoting bacteria fertilizer to the field experiment of R. glutinosa.

    Effects of Different Integration Sites on the Expression of Exogenous Alkaline Protease in Bacillus amyloliquefaciens
    NIU Xin, ZHANG Ying, WANG Mao-jun, LIU Wen-long, LU Fu-ping, LI Yu
    2022, 38(4):  253-260.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0755
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    In order to explore the effects of different gene integration sites on the expression of exogenous alkaline protease in the genome of Bacillus amyloliquefaciens,based on the genomic information of B. amyloliquefaciens TCCC 111018,the integration site of yaah gene was determined by predicting the replication initiation site OriC on the genome. In addition,the effects of 6 extracellular protease genes(epr,vpr,mpr,apr,bpr and nprE)after deleted individually on the activity of exogenous alkaline protease were analyzed,and the main secreted proteins in the fermentation supernatant were analyzed and identified by mass spectrometry. It is determined that the positions of the nprE and amyE genes are the other two integration sites. The alkaline protease gene aprE,from Bacillus clausii was integrated at three integration sites,then the alkaline protease activity of the integrated strain was compared and analyzed. The results showed that the alkaline protease activity of the integrated strain B.amyloliquefaciens 18-ΔY∷aprE and 18-ΔN∷aprE reached 784.36 U/mL and 1 289.09 U/mL,respectively,which were 15% and 88.9% higher than that of the original strain. Real-time fluorescent quantitative PCR and SDS-PAGE gel electrophoresis indicated that the transcription level and expression level of the alkaline protease of 18-ΔN∷aprE were the highest.The results showed that the integration of alkaline protease gene at nprE gene site effectively improved the expression of alkaline protease quantity,which laid a foundation for the further construction of industrial enzyme production strain.

    Characterization of Laccase TaLac from Thermus aquaticus and Its Application in Removing Malachite Green Dye
    MAO Guo-tao, WANG Jie, WANG Kai, WANG Fang-yuan, CAO Le-yan, ZHANG Hong-sen, SONG An-dong
    2022, 38(4):  261-268.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0852
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    To mine the laccases of DUF152 family showing great potential in removing the hazardous dye MG,a candidate from the thermophile Thermus aquaticus(TaLac)was screened by bioinformatics methods,and the recombinant vector pET28a-TaLac was constructed and overexpressed in Escherichia coli. TaLac was purified to study its enzymatic characterization and the ability to decolorize and detoxify MG. The results showed that TaLac contained the conserved copper binding sites of DUF152 family. The purified TaLac with high purity using nickel chelating affinity chromatography catalyzed the oxidation of 2,6-dimethylphenol(DMP),the substrate of typical laccases. The optimal pH,temperature,and Km of TaLac were 5.0,60℃,and 0.74 mmol/L,respectively using DMP as the substrate. Besides,TaLac retained 80% of its original activity after incubation for 4 h at 50℃. TaLac tolerated high concentrations of Mg2+,Ca2+,Mn2+,Zn2+ and Ba2+. Furthermore,TaLac completely decolorized 50 mg/L of MG in 3 h,and completely eliminated the toxicity of MG to Zea mays. Taken together,TaLac is a functional and thermostable laccase of DUF152 family,showing great ability to decolorize and detoxify MG.

    Expression of Pyranose Oxidase with Optimized Codon in Pichia pastoris
    WANG Yue, GAO Qing-hua, DONG Cong, LUO Tong-yang, WANG Qing-qing
    2022, 38(4):  269-277.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0148
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    Pyranose oxidase(P2O)plays an important role in lignin degradation and carbohydrate biosynthesis. P2O is also used in biological fuel cell,biosensors and clinical diagnostic analysis. The expression of pyranose oxidase in Pichia pastoris and enzymatic characters were carried out in our laboratory,which will provide a theoretical basis for the industrial and efficient production of pyranose oxidase in the future. Based on the codon preference of P. pastoris,the codon of pyranose oxidase gene was optimized by biotechnology. The recombinant P. pastoris GS115 was constructed via gene exogenous expression technology for achieving the efficient expression of P2O. The enzymatic properties of the recombinant P2O were studied. After optimizing the fermentation conditions of high-yielding recombinant strains,large-scale culture was conducted in 10 L fermenter. As results,P2O was highly expressed in P. pastoris after codon optimization. After 132 h induction culture in 10 L fermenter,enzyme activity reached 220 U/mL. The optimal temperature of recombinant pyranose oxidase was 55℃,and its thermal stability was good under the condition of no more than 60℃. The optimal pH for this enzyme was 6.5. In the range of pH 5-9,the relative enzyme activity was higher than 50%. P2O showed high stability in a wide range of pH,especially in alkaline conditions. Cu2+ presented a greater inhibition on enzyme activity. Assay of substrate specificity showed that the optimal substrate for the recombinant enzyme was D-glucose. In conclusion,the codon-optimized recombinant expression plasmid pPIC9K-P2O is successfully constructed in this study and highly expressed in P. pastoris GS115.

    Effects of High-dose Tannic Acid on the Intestinal Barrier Function and Gut Microbiota in Mice
    HE Ya-lun, ZENG Li-rong, LIU Xiong, ZHANG Ling, WANG Qiong
    2022, 38(4):  278-287.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0860
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    The objective of this study is to analyze the effects of high-dose tannic acid on the intestinal barrier and gut microbiota in normal-diet mice and high-fat diet-induced obese model mice. H&E staining,RT-qPCR,16S rRNA sequencing and other methods were used for detection and analysis. It was found that the intervention of high-dose tannic acid(400 mg/kg)reduced the body weights and food intakes of the mice,and increased the contents of various intestinal segments in the mice,among which the colon content significantly increased. In addition,high-dose tannic acid damaged the intestinal function and intestinal barrier,such as reduced the number of goblet cell and the length of crypt,and decreased intestinal tight junction protein(ZO-1,Occludin,and Claudin)expression. Moreover,oral administration of high-dose tannic acid changed the diversity of gut microbiota in the colon,and increased the abundance of SCFAs-producing bacteria Alistipes,Ruminococcus and Blautia,as well as obesity negatively related bacteria Alistipes and Oscillibacter. In conclusion,the results showed that the damage of intestinal mucosal barrier caused by high-dose tannic acid affected the digestion and absorption of food in mice,which might be the main potential reason for the rapid weight loss in the mice after the intervention of high-dose tannic acid. On the other hand,the changes of gut microbiota caused by high-dose tannic acid also had an effect on the body weights of the mice.

    Roles and Functions of MFG-E8 as Carrier Proteins in Exosomes
    LI Zhi-kang, LIU Chen-xue-xuan, TAN Chu-min, XIONG Sheng, XIE Qiu-ling
    2022, 38(4):  288-294.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0814
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    The objectives of this work are to construct the recombinant plasmids of full-length and truncated MFG-E8(milk fat globule epidermal growth factor 8),to analyze whether each truncated protein can bring the target protein to exosomes determine their positions,for exploring the function of each domain of MFG-E8 and the efficiency as carrier proteins in exosomes. Polymerase chain reaction(PCR)was used to amplify the MFG-E8 and its truncated genes with signal peptide and fused with EGFP gene to construct 7 recombinant plasmids. Then,the plasmids were transfected into HEK293F cells using PEI. Western blot and laser scanning confocal microscope(LSCM)were to detect the proteins expressions and intracellular locations of MFG-E8 and its truncated recombinant proteins,respectively. Meanwhile,the exosomes secreted by the transfected cells were extracted and the recombinant proteins in the exosomes were detected by Western blot and electron microscopic. Finally,the exosomes harbored recombinant proteins were transfected into HEK293T cells and the results of exosomes bringing the recombinant proteins into receptor cells were observed by fluorescence microscopy. Results showed that MFG-E8 and its truncated plasmids were constructed successfully and expressed in HEK293F cells. All recombinant proteins were expressed in the cells,of them the expression of EGF-L was the highest,while the lowest for C2. Only EGF-L,C1 and EC1 were detected in the cell supernatant. MFG-E8,EC1 and EC2 were detected in the exosomes secreted by the transfected cells. With these exosomes containing 3 proteins transfected into HEK293T cells,the fluorescence was observed in all three groups of cells,of which the exosome from MFG-E8-EGFP was the most effective. In conclusion,MFG-E8 can be used as a carrier to bring the proteins of interest to the exosome membrane,and its C1 and C2 domains are crucial to this process. The presence of EGF-L may promote protein expression.

    Establishing Tobacco Rattle Virus-mediated Gene Silencing System for Primula forbesii
    FU Si-tong, SI Wei-jia, LIU Ying, CHENG Tang-ren, WANG Jia, ZHANG Qi-xiang, PAN Hui-tang
    2022, 38(4):  295-302.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0924
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    Primula forbesii is a biennial herbaceous flower,which has high ornamental value as a landscape plant. It is also an ideal material to study heterostyly. In this study,a rapid and efficient verification technology of gene function is established for P. forbesii laying a foundation for studying the function of genes in P. forbesii. The optimal infection object,infection solution formula,bacterial solution concentration and infection mode of tobacco rattle virus(TRV)vector in P. forbesii were explored,and the VIGS system suitable for P. forbesii was established. The results showed that the OD600 value of bacterial solution containing TRV1 and PfPDS-TRV2 was adjusted to 1.0 in the infection solution of 200 μmol/L AS,10 mmol/L MgCl2 and 10 mmol/L MES. After mixing,P. forbesii was infected by abaxial leaf injection. The treated plant leaves were used in PCR with primers on TRV virus vector,and the virus vectors of TRV1 and TRV2 were detected in the plants with phenotypic changes and the no-load group. The expression of PfPDS in albino plants was significantly lower than that in the no-load group and the control group. The infection efficiency of the established VIGS system was 60%,the silencing phenotype lasted for 12 months,and could play a silencing role from leaf to sepal. Due to the long duration of silencing effect,all genes can be verified by this method.

    Development of SNP Markers in Medicago archiducis-nicolai Based on GBS-seq
    ZHOU Xiao-nan, XU Jin-qing, LEI Yu-qing, WANG Hai-qing
    2022, 38(4):  303-310.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0906
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    In order to provide theoretical support for evaluating and exploiting the genetic resources in Medicago archiducis-nicolai,the SNPs were developed and the preliminary analysis of genetic diversity was carried out. A total of 80 individuals of M. archiducis-nicolai from 5 populations were selected to conduct GBS-seq and SNP markers were developed by using GATK software,and then preliminary analysis of genetic structure and genetic diversity was conducted. A total of 60.79 Gb sequence data was obtained,and 12 796 SNP sites were retained after screening,and SNP mutation types demonstrated obvious transition bias. The observed heterozygosity(Ho)for different geographic sources of M. archiducis-nicolai population was 0.187 68-0.304 36. The expected heterozygosity(He)was 0.201 97-0.364 34. The nucleotide diversity index(Pi)was 0.178 32-0.241 34,the population in Qilian of Qinhai province presented a relatively highest genetic diversity. The results of the genetic structure indicated that 5 populations could be divided into 2 groups,and there was highly significant positive correlation between geographical distance and genetic distance among populations of M. archiducis-nicolai. The SNP markers are suitable for analyzing the genetic diversity of M. archiducis-nicolai.