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    26 July 2024, Volume 40 Issue 7
    Regulatory Mechanisms of Small Peptides in Plant Meristem Development and Its Research Advances in Crop Improvement
    LIU Wen-hao, WU Liu-ji, XU Fang
    2024, 40(7):  1-18.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0193
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    Throughout the growth and development of higher plants, the shoot apical meristem(SAM)and root apical meristem(RAM)continually differentiate to generate roots, stems, leaves and flowers, then forming above-ground and below-ground organs, respectively. As one of important intercellular signal transduction molecule, small peptides are involved in regulation of many physiological processes in plant development and resistance to biotic and abiotic stress. Particularly, they play crucial role in regulating the activity of SAM and RAM, which ultimately affect the origin and development of plant organs. In recent years, emerging evidences reveal the importance roles of small peptides in maintaining meristems homeostasis and regulating crop agronomic traits. This review highlights the biological functions and molecular mechanisms of small peptides and their receptors in maintaining the homeostasis of meristems in Arabidopsis and crop species. It also discusses the role of small peptides in regulating crop yield traits and their application in crop improvement. Additionally, the review proposes and prospects the potential interesting research direction of small peptides.

    Research Progress in the Auxin Signaling Pathway Involved in the Regulation of Female Gametophyte Development in Arabidopsis
    YANG Jia-hong, LI Jing-yi, WU Jia-hao, HUANG You-mei, LIU Yan-fen, QIN Yuan, CAI Han-yang
    2024, 40(7):  19-27.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0109
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    Female gametophyte development is an important prerequisite for sexual reproduction in flowering plants, including two key events, macrosporogenesis and female gametophyte development. The development of the female gametophyte determines whether the plant can be properly fertilized and complete the reproduction of generations. Auxin is a widespread phytohormone in plants, and the polar distribution of auxin in the ovule ensures the normal development of the ovule. However, due to the complexity of the auxin signaling pathway and the fact that female germ cells are located inside the tissues, the regulatory network and molecular mechanism of the auxin signaling pathway in the female germline are still unclear. In this paper, we summarize the studies related to auxin synthesis, dynamic equilibrium and signaling, and review the studies on auxin regulation of macrosporogenesis and female gametophyte genesis. The aim of this paper is to provide a reference for the further study of the auxin signaling pathway on female germline establishment.

    Research Progress of UDP-glycosyltransferase Related to Anthocyanin Modification in Plants
    WANG Qing, NI Er-dong, WANG Qiu-shuang, QIN Dan-dan, FANG Kai-xing, LI Hong-jian, JIANG Xiao-hui, LI Bo, PAN Chen-dong, WU Hua-ling
    2024, 40(7):  28-42.  doi:10.13560/j.cnki.biotech.bull.1985.2023-1065
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    Glycosylation plays important roles in the structural diversity and stability of plant natural products. The free anthocyanins in plants are unstable and usually form stable anthocyanins under the catalysis of uridine diphosphate dependent glycosyltransferases(UGTs). In recent years, more and more reports about anthocyanin glycosylation have been reported, and various enzymes involved in anthocyanin glycosylation have been found in different plants. This paper mainly reviews the research progress in the structural characteristics, metabolic pathways, biochemical processes, molecular identification, and transcriptional regulation of UGTs related to anthocyanin modification in plants, aiming to provide insights into investigating plant anthocyanin glycosylation modification and its regulatory process.

    Research Progress in Plant Gibberellin Oxidase and Its Functions
    WU Ding-jie, CHEN Ying-ying, XU Jing, LIU Yuan, ZHANG Hang, LI Rui-li
    2024, 40(7):  43-54.  doi:10.13560/j.cnki.biotech.bull.1985.2023-1177
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    Gibberellin(GA)is an important plant hormone that regulates plant development and its response to environmental signals, the biosynthesis and metabolism of GA are involved in a variety of enzymes, and gibberellin oxidase plays a key role in regulating the biosynthesis of gibberellin. Gibberellin oxidase is the key enzyme in gibberellin biosynthesis and catabolism and plays a complex regulatory role in the gibberellin biosynthetic pathway in plants. GA20ox(gibberellin 20 oxidase), GA3ox(gibberellin 3 oxidase)and GA2ox(gibberellin 2 oxidase)are the gibberellin oxidase gene family. GA20ox and GA3ox are rate-limiting enzymes in gibberellin biosynthesis, while GA2ox is the key enzyme in gibberellin catabolism. And they regulate GA biosynthesis pathway in plants and ensure the plant's demand for GA during growth and development and interaction with the environment. Gibberellin oxidase is involved in regulating plant growth and development, and it is strictly regulated by environment and endogenous factors. Gibberellin oxidase has been cloned in Arabidopsis thaliana, Oryza sativa; and poplar species, and its function varies among species. Therefore, this review focuses on the functions of GA20ox, GA3ox and GA2ox, describes the characteristics, spatial and temporal expression of plant gibberellin oxidase and the response of gibberellin oxidase to light and hormones, with special emphasis on the function of gibberellin oxidase and its research progress, aiming to provide information for further studies on gibberellin oxidase gene function.

    Repair Mechanisms of DNA Double-strand Breaks and Their Roles in Heavy Ion Mutagenesis and Gene Editing in Plants
    LONG Jing, CHEN Jing-min, LIU Xiao, ZHANG Yi-fan, ZHOU Li-bin, DU Yan
    2024, 40(7):  55-67.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0033
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    Plants are often subjected to DNA damage due to a range of environmental and internal factors in the natural world. Among these factors, DNA double strand breaks(DSBs)have the most serious consequences to plants. If these DSBs are repaired improperly, which may result in genome instability, gene mutations, and even cell death. On one hand, plants have evolved a powerful and well-organized damage repair mechanism to ensure overall survival and normal reproduction. On the other hand, based on the fault-tolerance and mutagenicity of the repair process, a series of techniques such as T-DNA insertion, gene editing, and physical mutagenesis have been widely used for variety improvement in plants and animals. Compared with mammals, reports on DSBs repair pathways and their molecular mechanisms in plants are limited. In this paper, we review the responses of plants to DSBs damage and the main repair mechanisms, and we also focus on the recent advances in alternative end joining(Alt-EJ), whose mechanism has not yet been fully revealed. In addition, we discuss the characteristics and multi-pathway options of DSBs repair in plants induced by heavy ion beams irradiation, and the progress of gene editing technology based on different DSBs repair pathways. This study aims to provide reference for understanding the molecular mechanism of plant DSBs damage response and developing efficient biological breeding technology.

    Application of Gene-editing Technology for Germplasm Innovation and Genetic Improvement in Cotton
    HOU Wen-ting, SUN Lin, ZHANG Yan-jun, DONG He-zhong
    2024, 40(7):  68-77.  doi:10.13560/j.cnki.biotech.bull.1985.2023-1054
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    Cotton is a globally important cash crop and a crucial raw material for the textile industry. Breeding superior cultivars is the primary approach for increasing cotton yield, fiber quality and agronomic benefits. While traditional breeding methods are increasingly limited in improving the genetic traits of crops, gene editing technology offers opportunities to promote germplasm innovation and genetic improvement in cotton. Gene editing is a technology that utilizes engineered nucleases to precisely edit the DNA sequences of an organism's genome by deleting, modifying, inserting or replacing individual or multiple nucleotides in specific target genes. This article reviews the principles of three major gene editing systems, namely ZFNs, TALENs, and CRISPR, aiming to better understand how gene editing technology can be used to enhance cotton growth, development, and stress tolerance. Specifically, a comprehensive overview of the CRISPR gene editing system, which has gained significant attention, is provided, summarizing its current applications in improving cotton stress tolerance and other desirable traits. In addition, this article analyzes the shortcomings and limitations of gene editing technology, emphasizes the need for further research of optimizing and developing gene editing system with intellectual property right as well as increasing its accuracy and safety, and thus leverage its application in germplasm innovation and genetic improvement in cotton.

    Research Progress in the Immortalization of Animal Cells
    ZHANG Zhen-yu, JIN Li-wu, WANG Jing-zun, TIAN Ling, QIAO Zi-lin, YANG Di, AYIMUGULI Abudureyimu
    2024, 40(7):  78-89.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0020
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    Cell immortalization refers to breaking through the limitations of primary cell aging, extending cell lifespan, and achieving unlimited cell replication and proliferation through various means and methods, which is a hot and difficult research topic in the current biomedical field. Immortalized cell lines can be used for the development of biological products, exploration of aging mechanisms to extend life, etc. However, due to the limited variety of immortalized cells, relatively difficult immortalization technology, tumor risk, and animal welfare ethics, it still cannot meet the research and developing needs. The purpose of immortalizing cells is not only to permanently preserve the genetic resources of animal cells, but also to provide support for the diagnosis and treatment of various diseases, as well as to develop cell matrix for vaccines. This article reviews the latest progresses in the principles, mechanisms, and methods of immortaling animal cells, providing reference for future biomedical research and applications.

    Mechanism Study and Application of CRISPR/Cas12a-based Biosensing Platform
    CHEN Mo-yan, ZHU Cheng
    2024, 40(7):  90-98.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0118
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    CRISPR/Cas12a system can accurately identify specific single-stranded DNA or double-stranded DNA containing PAM sequences with programmable guide RNA. Then, the non-specific single strand DNA can be cleaved rapidly at the same time as the target substrate, which shows great prospects in biosensing. In recent years, the CRISPR/Cas12a system has been widely used for assisted detection of biomarkers, and its biomarker sensing platform has been applied in the construction of biomolecular sensors such as visualized cell pathways and in vivo diagnostics. Based on the principles of CRISPR/Cas12a biosensing platform construction, this paper summarizes the variants of CRISPR/Cas12a system under different application scenarios, then highlights and summarizes the applications of in vitro and in vivo sensing platforms based on this system, and further discusses the characteristics of different sensing platforms. Finally, the paper summarizes and prospects the advantages and limitations of current applications, aiming to provide a certain reference for the research and application in this field.

    Efficient Biosynthesis of 2-Naphthaleneethanol in Metabolically Engineered Saccharomyces cerevisiae
    HE Yu-bing, FU Zhen-hao, LI Ren-han, LIU Xiu-xia, LIU Chun-li, YANG Yan-kun, LI Ye, BAI Zhong-hu
    2024, 40(7):  99-107.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0225
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    【Objective】 To elucidate the biosynthesis of 2-naphthaleneethanol and explore the gene combination beneficial to the synthesis of 2-naphthaleneethanol. 【Method】 2-Naphthylalanine was added to the fermentation broth of Saccharomyces cerevisiae BY4741 and the product was detected by HPLC. The growth curve and yield curve of BY4741 were explored. After adding different concentrations of 2-naphthylalanine into the fermentation broth of BY4741, the growth and production level were detected. The plasmids overexpressing six genes of Ehrlich pathway were constructed and transformed into BY4741. Six modified strains were fermented and the product yield was detected. 【Result】 2-Naphthaleneethanol was detected in the fermentation broth as expected. Compared with the wild type BY4741, the yields of the metabolically engineered strains were all improved. Overexpressing ARO9 and ARO10 made the yield of 2-naphthaleneethanol reached 0.258 mmol/L when exogenous 2-naphthylalanine was added, and the transformation rate reached 2.3 times that of the wild type. 【Conclusion】 The biosynthesis of 2-naphthaleneethanol was achieved in S. cerevisiae. ARO9 and ARO10 were found to be the optimal gene combinations beneficial to the biosynthesis of 2-naphthaleneethanol. This study provides a new biosynthesis method for industrial production of 2-naphthaleneethanol.

    Design and Application of a Cumate-inducible Promoter for Corynebacterium glutamicum
    WU Shu-ning, SU Yong-ping, LI Dong-xue, BAI Ying-guo, LIU Bo, ZHANG Zhi-wei
    2024, 40(7):  108-116.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0174
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    【Objective】 Corynebacterium glutamicum is an important industrial microorganism, and its metabolic engineering modification by gene editing may effectively broaden the diversity of its fermentation products. The lack of high-intensity, low-leakage, and low-cost inducible promoters limits the metabolic engineering modification, thereby the design and application of novel inducible promoters are necessary. 【Method】 An cumate-induced promoter PH10-CuO was constructed by embedding the operator sequence CuO on the constitutive promoter PH10. 【Result】 Using green fluorescent protein as a quantitative reporter, the relative fluorescence intensity was low due to the basal leakage of PH10-CuO when without the inducer 4-isopropylbenzoic acid; and gfp expression significantly increased when the fluorescence intensity was up to 62 000 at presence of 25 μg/mL 4-isopropylbenzoic acid for 12 h. This proved that PH 10-CuO has very good rigor and induced expression intensity. Meanwhile, in Constructing the gene editing plasmid for C. glutamicum with PH10-CuO regulating the expression of recET and cas12a, The accurate editing of target gene and insertion of foreign genes in C. glutamicum chromosome. 【Conclusion】 The inducible promoter PH10-CuO presented the advantages with high intensity and low leakage, which enables it as an useful element to regulate temporal expression of specific genes in C. glutamicum.

    Establishment of Dual LFD-RPA Rapid Detection Method for Mycoplasma gallisepticum and Mycoplasma synoviae
    TIAN Xing-miao, WANG Jian-lin, GUO Lei, SI Duo-duo, GONG Zhen-xing, LI Ji-dong
    2024, 40(7):  117-124.  doi:10.13560/j.cnki.biotech.bull.1985.2023-1107
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    【Objective】 Mycoplasma gallisepticum(MG)and Mycoplasma synoviae(MS)are the two most harmful mycoplasmas to poultry. Early diagnosis of MG and MS was a key to prevent and control avian mycoplasma. Through combining recombinase polymerase amplification(RPA)technology with lateral flow dipstick(LFD), a rapid detection method for MG and MS with convenient operation, rapid response and visual results was established. 【Method】 Specific primers and probes were designed based on MG mgc2 gene and MS vlhA gene, and a dual LFD-RPA rapid detection method was established by optimizing reaction time, reaction temperature and primer ratio, and its sensitivity, specificity and stability were evaluated. Meanwhile, 120 clinical samples were tested. 【Result】 The amplification was done by dual LFD-RPA detection method at 37℃ for 5-10 min, and the optimal primer ratio of RPA-MG-F2/R2 and RPA-MS-F1/R1 was 0.6∶1.4. The minimum detection limits of MG and MS were 3.75 copies/μL and 3.46 copies/μL, respectively. This method and the PCR method recommended by OIE were used to detect 120 samples, and the coincidence rate was 93.3%. 【Conclusion】 The amplification can be done by the dual LFD-RPA detection method of MG and MS under constant temperature conditions. It has simple operation, rapid response, high sensitivity, strong specificity and good stability, and the results can be observed without using any instrument. It is suitable for the field rapid detection of MG and MS infection alone or mixed infection at the primary level.

    Gene Identification and Functional Analysis of Yellowish and Early Heading Mutant hz1 in Rice
    PANG Meng-zhen, XU Han-qin, LIU Hai-yan, SONG Juan, WANG Jia-han, SUN Li-na, JI Pei-mei, YIN Ze-zhi, HU You-chuan, ZHAO Xiao-meng, LIANG Shan-shan, ZHANG Si-ju, LUAN Wei-jiang
    2024, 40(7):  125-136.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0132
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    【Objective】 The heading date of rice(Oryza sativa)is an important agronomic trait and crucial for the regional adaptability and yields. Identification and functional analysis of heading date-associated genes may provide important gene resources for the breeding in rice. 【Method】 BSA-seq was performed to identify target gene of a yellowish and early heading mutant huangzao 1hz1). RT-qPCR was used to analyze the expression profile of target genes. The subcellular localization of HZ1 was determined by transient transformation between rice protoplasts and tobacco cells. Meanwhile, the heading dates, chlorophyll content and hydrogen peroxide content were measured to analyze the phenotype of hz1 mutant. 【Result】 Field phenotypic observations found that hz1 showed early heading phenotype. The heading date of hz1 mutant was the same under long-day(LD)and short-day(SD)conditions, which were 43 d and 26 d earlier than those of wild type(WT)respectively, indicating that hz1 was a photoperiod-insensitive mutant. Moreover, hz1 demonstrated a yellowish phenotype, with a decrease in chlorophyll content compared with WT. Genetic analysis revealed that hz1 was controlled by a recessive gene. BSA-seq(Bulk segregation analysis with whole-genome sequencing)of F2 pools indicated that the causal gene was linked with molecular markers on the chromosome 6 with 17.8 Mb region. Further analysis demonstrated that LOC_Os06g40080 site with a T-DNA insertion was completely linkage with hz1 mutant. LOC_Os06g40080 site was an identified SE5 gene encoding heme oxygenase 1(HO1). Expression pattern analysis revealed that HZ1/SE5 was highly expressed in the leaves and dhad diurnal rhythm expression. Subcellular localization assay showed that HZ1/SE5 protein was localized in chloroplasts. Gene expression analysis showed that HZ1/SE5 regulated the expression of florigen genes Hd3a and RFT1 to modulate the heading date in rice. In addition, HZ1/SE5 can also regulate the expression of genes associated with chlorophyll synthesis pathway to modulate the change of chlorophyll levels. 【Conclusion】 hz1 mutant is a photoperiodic insensitive mutant due to the mutation of heme oxygenase gene SE5. HZ1/SE5 may regulate the expression of the florigen genes and chlorophyll synthesis-associated genes to influence the heading date and leaf yellowish in rice.

    Comparative Transcriptome Analysis of Cytoplasmic Male Sterile Line and Its Restorer Line in Soybean
    GAO Meng-meng, ZHAO Tian-yu, JIAO Xin-yue, LIN Chun-jing, GUAN Zhe-yun, DING Xiao-yang, SUN Yan-yan, ZHANG Chun-bao
    2024, 40(7):  137-149.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0219
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    【Objective】 The “three line” method is the main way to breed hybrid soybeans. At present, only a few soybean restoration genes have been cloned. Thus it will be helpful in the breeding strong restorer lines with multi genes aggregation, thereby improving the fertility stability of hybrid F1, if more new Rf genes can be discovered. 【Method】 Using soybean cytoplasmic male sterile line JLCMS5A and its restorer line JLR2 as materials, transcriptome sequencing technology was used to analyze the transcriptional level changes of JLCMS5A and JLR2 flower buds at different stages, and to explore the relevant genes and pathways regulating restorer of fertility and flower bud development processes. Further gene annotation, sequence difference analysis, RT-qPCR validation, phylogenetic analysis, and protein structure prediction were performed on differentially expressed genes(DEGs) with Rf gene features encoding PPR(pentatrioptide repeat)proteins to explore Rf related genes. 【Result】 Transcriptome sequencing identified 17 181 DEGs, of which 3 856 were related to developmental stage and 2 808 were related to fertility. GO(gene ontology)functional annotation indicated that fertility-related DEGs were mainly enriched in functional categories such as ADP binding, nucleic acid binding transcription factor activity, and protein kinase activity, while developmental stage-related DEGs were mainly enriched in functional categories such as protein heterodimerization activity, DNA replication, and DNA binding. KEGG(kyoto encyclopedia of genes and genes)enrichment analysis showed that fertility-related DEGs mainly participate in metabolic pathways closely related to protein, carbohydrates, and signal transduction, such as endoplasmic reticulum protein processing, glucoside biosynthesis, and plant hormone signal transduction. Development-related DEGs mainly participated in metabolic pathways closely related to DNA replication, mismatch repair, starch and sucrose metabolism, and cell division and energy degradation. Analysis of candidate Rf genes revealed that the Glyma.09G176400 in JLR2 may play a certain role in regulating the restorer-of-fertility process of soybean cytoplasmic male sterility. 【Conclusion】 3 856 DEGs and 2 808 DEGs which respectively related to developmental stage and fertility were identified by transcriptomic techniques and molecular biological methods. Whereafter, a total of 15 DEGs encoding PPR protein were identified, which had the characteristics of restorer-of-fertility gene. Finally, a restorer-of-fertility related gene Glyma.09G176400 was excavated.

    Identification and Expression Analysis of FAD Gene Family in Solanum lycopersicum
    ZHANG Ming-ya, PANG Sheng-qun, LIU Yu-dong, SU Yong-feng, NIU Bo-wen, HAN Qiong-qiong
    2024, 40(7):  150-162.  doi:10.13560/j.cnki.biotech.bull.1985.2023-1090
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    【Objective】 Fatty acid desaturase(FAD)is a key enzyme that catalyzes the synthesis of unsaturated fatty acids in plants, and it plays an important role in plant growth and development and response to adversity stress. This work aims to identify the tomato(Solanum lycopersiSlFAD gene family and provide a theoretical basis for the study of tomato SlFAD gene family function and genetic improvement. 【Method】 Bioinformatics was used to identify the members of its gene family, and to study its physical and chemical properties, gene structure, phylogenetic tree and expression patterns. 【Result】 The total of 26 SlFAD genes were identified in the tomato genome, which can be divided into 4 sub-families. The analysis of physical and chemical properties showed that the number of amino acids of SlFAD protein was 119-912, the molecular weight was 13 288.27-102 522.25 Da. The SlFAD protein mainly existed in the nature of alkaline protein, and most of the members of the SlFAD family were stable proteins and hydrophilic proteins. Subcellular localization predicted that the members of the SlFAD gene family mainly were located in the endoplasmic reticulum. Genetic feature analysis showed that the members of the same subfamily hadsimilar genetic structure and conservative sequence. The analysis of cis-acting elements in the promotor showed that the largest number of components was related to light response and hormone response. Chromosome positioning revealed that 26 members of the SlFAD family were distributed on 10 chromosomes, and the largest number of members on chromosome 6 and 12. Secondary structure prediction demonstrated that 26 members of the SlFADs family were alpha-spiral and β-turning angle were the main ones. Transcriptome data and RT-qPCR analysis showed that the SlFAD1, SlFAD4 and SlFAD18 genes were highly expressed in mature anthers, and SlFAD23 was highly expressed in the root tip, indicating SlFAD1, SlFAD4 and SlFAD18 participated in the anther development, SlFAD23 participated in the root tip development. Under low-temperature stress, the expressions of SlFAD6 and SlFAD21 were inhibited, indicating that SlFAD6 and SlFAD21 might be related to low-temperature response, SlFAD1 and SlFAD14 at the beginning of low-temperature stress. The period significantly increased and then inhibited, indicating that the gene played an important role in the early stage of low-temperature stress. 【Conclusion】 The SlFAD gene family plays an important role in the growth and development of tomato roots, leaves, anthers and low-temperature stress.

    Genome-wide Identification and Expression Pattern Analysis of BZR Transcription Factor Gene Family of Melon
    ZANG Wen-rui, MA Ming, CHE Gen, HASI Agula
    2024, 40(7):  163-171.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0162
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    【Objective】 Brassinazole-resistant(BZR)is a plant specific transcription factor that plays a crucial role in plant growth and development. Identifying members of the CmBZR gene family across the whole melon genome, and analyzing the expression patterns of related gene, may provide a basis for further exploring the biological functions of the melon BZR gene family. 【Method】 Based on the whole melon genome data, the BZR family genes in melon were identified using BLAST. Bioinformatics methods were used to analyze the physicochemical properties, chromosomal distribution, gene structure, protein domains, phylogenetic evolution, and cis acting elements of the family proteins. Fluorescence quantitative PCR was used to verify the expression of BZR family genes in different tissues and fruits of melon at different growth and development stages. 【Result】 A total of 6 BZR genes were identified in cantaloupe, which can be divided into 5 subfamilies through phylogenetic analysis. CmBZR genes are distributed on chromosomes 3, 7, 8, 11, and 12. All BZR proteins have conserved domains. The promoter region of the CmBZR gene is significantly enriched with cis-acting elements related to growth and development, hormone signal transduction, and abiotic stress. CmBEH1-4 is highly expressed in stems, female flowers, and ovaries, and is also expressed in growth, maturity, respiratory climacteric, and late respiratory climacteric stages. 【Conclusion】 Six members of the melon CmBZR gene family have been systematically identified across the whole genome, and different genes are expressed in various tissues and growth stages of the melon,and their expression patterns are various.

    Identification, Expression and DNA Variation Analysis of FLS Gene Family in Chenopodium quinoa
    SUN Hui-qiong, ZHANG Chun-lai, WANG Xi-liang, XU Hong-shen, DOU Miao-miao, YANG Bo-hui, CHAI Wen-ting, ZHAO Shan-shan, JIANG Xiao-dong
    2024, 40(7):  172-182.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0094
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    【Objective】 This study is to identify and analyze the flavonol synthetase FLS gene family as a key enzyme in the secondary metabolism of polyphenols in Caryophyllum plants and to explore the function of FLSs in Chenopodium quinoa. 【Method】 Bioinformatics analysis website was used to identify the CqFLS family members, and analyze their gene structure, protein physicochemical properties, secondary structure, tertiary structure, promoter cis element and phylogenetic relationship. The gene cloning and expression vector construction was to analyze their protein expression. 【Result】 The 3 CqFLSs genes were identified, and they were unevenly distributed on two chromosomes, and the promoter region of CqFLSs contained salicylic acid, abscisic acid, methyl jasmonate and drought-induced elements. There were multiple InDel and SNP variations in CqFLS2.1g,the coding nucleotides were deleted at ch01 28871893, 28871125, and 28872881, and all of them were annotated as upstream effects, and no frameshift mutations were detected. Phylogenetic tree analysis showed that CqFLS2.1g were in different branches from CqFLS1.1g and CqFLS3.10g, their expressions varied, and CqFLS2.1g were also differentiated. Meanwhile gene expression analysis revealed that the overall expressions of the three CqFLSs genes in “Qingbai 1” grains were higher than those of “Qinghei 1” and “Gongzha 4”. The cloned CqFLS1.1g was induced with 0.3 mmol/L IPTG and was successfully expressed at both 20℃ and 37℃. 【Conclusion】 CqFLS1.1g plays a role in the formation of flowers and grain development, while CqFLS2.1g is mainly involved in the formation of quinoa grains, and the expression of CqFLS is tissue-specific and plays an important role in the growth and development of quinoa.

    Effect of Nano-selenium(SeNPs)in Alleviating Lead Stress and Promoting Growth of Tobacco Seedlings
    DU Zhong-yang, YANG Ze, LIANG Meng-jing, LIU Yi-zhen, CUI Hong-li, SHI Da-ming, XUE Jin-ai, SUN Yan, ZHANG Chun-hui, JI Chun-li, LI Run-zhi
    2024, 40(7):  183-196.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0078
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    【Objective】 This study is to explore effects of nano-selenium(SeNPs)on growth and stress resistance of tobacco seedlings under lead(Pb)stress, as well as Pb absorption and translocation, aiming to reveal the mechanisms of SeNPs-mediated growth promotion, Se enrichment, and inhibition of Pb uptake and transfer in plants. 【Method】 Common tobacco(Nicotiana tabacum)was selected as the test crops. Various treatments were designed and used in a series of pot experiments, including low(100 mg/L)and high(200 mg/L)doses of Pb stresses, inorganic Se(Na2SeO3)and SeNPs trteatments as well as blank controls. Physiological and biochemical indexes of tobacco seedlings were quantitatively measured, including biomass, photosynthetic physiological parameters, antioxidant enzyme activities, lipid peroxidation product contents, and the related gene expression levels in tobacco seedling. The contents and distribution of Se and Pb were also examined in both aboveground and underground organs. 【Result】 Compared with the control group, Se treatments significantly promoted the growth and photosynthesis of tobacco seedlings, with SeNPs showing more significant growth-promoting effect. Se treatments also enhanced the antioxidant enzyme(SOD, CAT, POD and APX)activities and accumulation of lipid peroxidation products(proline, ascorbic acid and glutathione), followed by reducing accumulation of lipid peroxidation products(proline, ascorbic acid and glutathione)in tobacco seedlings. Under Pb stress conditions, Se treatments significantly increased the selenium content in tobacco seedlings, whereas the Pb absorption and transport rate from underground to aboveground parts were largely reduced in tobacco seedlings. 【Conclusion】 SeNPs demonstrates signicantly growth-promoting effects, including increasing plant biomass, protecting photosynthesis system, activating antioxidant system, blocking lead absorption and transport, facilitating selenium enrichment and improving plant resistance to lead stress.

    Transcriptome Sequencing of Male Sterile Buds at Different Developmental Stages in Sapindus mukorossi ‘Qirui’
    LIAO Yang-mei, ZHAO Guo-chun, WENG Xue-huang, JIA Li-ming, CHEN Zhong
    2024, 40(7):  197-206.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0039
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    【Objective】 The objective of this work is to observe the cytological characteristics of the anther development in the male sterile Sapindus mukorossi ‘Qirui’, identify differentially expressed genes(DEGs)during the critical period of anther development,which provides a theoretical basis for deeply analyzing the molecular mechanism of the male sterility. 【Method】 By examining the cytological features of male anther development stages, RNA-Seq technology was used to compare the transcriptome of male buds at different stages: microspore mother cell stage(T1), tetrad stage(T2)and mononuclear microspore stage(T3), to identify key DEGs. 【Result】 The study revealed that the continuous expansion and proliferation of ‘Qirui’ tapetum and endothecium led to a chaotic anthecium structure and insufficient anthecium space, resulting in abortive pollen. Additionally, a decrease in the level of jasmonic acid(JA)from endogenous hormone determination was observed during male bud development. A total of 2 990 DEGs were detected through transcriptome analysis at the three anther development stages, of which 722 in T2_vs_T1(516 up-regulated and 206 down-regulated), and 1 741 in T3_vs_T2(765 up-regulated, 976 down-regulated). GO and KEGG analysis showed that these DEGs were primarily enriched in metabolic processes, cell division, pollen wall synthesis, hormone signal transduction, etc. Specifically, 32 DEGs were associated with pollen development, and 27 DEGs were linked to hormone synthesis and signal transduction. Nine DEGs were randomly selected for RT-qPCR analysis, and the results were consistent with the trend of RNA-Seq data, which proved the accuracy of transcriptome data. 【Conclusion】 The continuous proliferation of tapetum, delayed degeneration of endothecium, and continuous extrusion of microspores are the key factors leading to male sterility in S. mukorossi ‘Qirui’. Overall, genes related to material metabolism, cell division, hormone level and pollen development play crucial roles in the mechanism of male sterility.

    Functional Verification of Isopentenyl Transferases PjIPT Gene in Psathyrostachys juncea
    REN Xiao-min, YUN Lan, AI Qian, ZHAO Qiao
    2024, 40(7):  207-215.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0152
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    【Objective】 The isopentenyl transferase(IPT)enzyme plays a crucial role in the biosynthesis of trans-zeatin(tZ), a cytokinin that regulates plant growth, development, and resistance to stress. It significantly contributes to bud growth promotion and regulation of lateral branch development in plants. Exploring the function of IPT provides a theoretical basis for the subsequent improvement of new wheat grass yield traits. 【Method】 Through phylogeny and multiple sequence alignment, the features and homology of the coding amino acid sequence were explored. PjIPT-overexpressed Arabidopsis thaliana plants were obtained by pollen tube passage, and the transgenic plants were verified by reverse PCR(RT-PCR)and protein blot(Western blot, WB), their tissue expression patterns were analyzed by real-time quantitative reverse PCR(RT-qPCR), and trans-zeatin was determined by liquid mass combination system. 【Result】 The IPT proteins in Psathyrostachys juncea with Triticum dicoccoides and other wheat crops had high homology, and AtIPT9 is a homologous protein of PjIPT. PjIPT-overexpressed in A. thaliana plants was achieved through the pollen tube pathway method, demonstrating an upregulation in the number of branches. RT-PCR and Western blot analysis confirmed the normal expressions of PjIPT at both transcriptional and protein levels. Spatial-specific expression analysis using RT-qPCR indicated that PjIPT demonstrated specific expression patterns in the tillering nodes and leaves of Arabidopsis. Furthermore, quantitative analysis of tZ revealed that PjIPT regulated the number of branches in Arabidopsis by participating in the biosynthesis of tZ. 【Conclusion】 PjIPT is a key gene involved in upregulating plant branching.

    Screening and Biocontrol Effect of Antagonistic Bacteria against Soybean Root Rot
    WANG Fang, YU Lu, QI Ze-zheng, ZHOU Chang-jun, YU Ji-dong
    2024, 40(7):  216-225.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0070
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    【Objective】 Fusarium root rot is one of the most devastating soil-borne diseases in soybean planting areas worldwide. This study aims to obtain antagonistic bacteria effectively against Fusarium graminearum. 【Method】 Antagonistic strains were isolated from the rhizosphere soil of healthy soybean plants and screened by plate confrontation method. The morphological characteristics, physiological and biochemical properties, extracellular enzyme activity and growth-promoting characteristics of strains were identified and evaluated. The biocontrol and growth promotion effect of the strain was determined by pot experiment. 【Result】 Four Bacillus strains and 1 Pseudomonas strain screened were effective against F. graminearum, with the inhibition rates above 60%. Besides, the strains also had certain inhibitory effect on F. oxysporum, F. solani, F. longifundum and F. equiseti. The fermentation liquid and volatile metabolites of the strains affected the growth of F. graminearum. And all strains demonstrated proteolytic, cellulolytic and glucanolytic activity, and were able to solve phosphorus and potassium, as well as possessed nitrogen fixation and iron carrier. Based on the above test results, strain 20-8 had stronger antifungal effect and soybean growth-promoting effect, and it was identified as Bacillus siamensis based on morphology characteristics and 16S rRNA sequencing. The fermentation supernatant of the strain destroyed the mycelium structure of F. graminearum, and the cell-free fermentation supernatant significantly inhibited the spore germination. Moreover, the diluted fermentation solution of the strain enhanced the resistance of soybean to F. graminearum, with biocontrol efficiency of 46.08%, and promoted the growth of soybean seedling. 【Conclusion】 These results indicated that the screeded and identified B. siamensis 20-8 possesses the ability of solving phosphorus solubilization and potassium, fixing nitrogen and producing iron carrier as well as a variety function of extracellular enzymes. Its diluted fermentation solution has strong antifungal activity and soybean growth promotion ability. Therefore, strain 20-8 may be used as a biocontrol strain against soybean root rot caused by F. graminearum.

    Study on the Control and Induced Resistance in Cucumber with Bacillus subtilis B579 against Cucumber Fusarium Wilt
    FAN Zong-qiang, FENG Jing-han, ZHENG Li-xue, WANG Shuo, PENG Xiang-qian, CHEN Fang
    2024, 40(7):  226-234.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0160
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    【Objective】 To explore the control effect and mechanism of Bacillus subtilis B579 on cucumber Fusarium wilt. 【Method】 Plate confrontation test and greenhouse pot experiment were used to detect the growth and morphological changes of the pathogen, plant growth, activity of defense enzymes in leaves and malondialdehyde content, and expression of defense-related related genes. 【Result】 The B. subtilis B579 had a strong inhibitory effect on cucumber Fusarium wilt, and the mycelium around the inhibition zone showed uneven thickness, swelling and breakage. Pot experiment demonstrated that B579 achieved the disease control efficiency against cucumber wilt, reaching 78.80%. The plant height, stem diameter, fresh weight, and dry weight of cucumber seedlings in B579 treatment increased by 13.87%, 4.17%, 15.15% and 12.77% compared with the control group, respectively. After pretreatment with B579, pathogen inoculation significantly increased the activities of phenylalanine ammonilyase(PAL), polyphenol oxidase(PPO), peroxidase(POD), and catalase(CAT)and reduced the content of malondialdehyde(MDA)in cucumber leaves on day 4 and 7 compared with the control group. The results of real-time fluorescence quantitative PCR showed that the expressions of LOX, PR1, PR3 and CAT genes in cucumber leaves after inoculation with B579 and then challenge with pathogen were significantly higher than those in other treatments at 4 and 7 d. 【Conclusion】 B. subtilis B579 can control cucumber Fusarium wilt by directly inhibiting the growth of pathogen and inducing resistance in cucumber.

    Whole Genome Sequencing and Comparative Genomic Analysis of Antagonistic Bacterium CCBC3-3-1 against Verticillium dahlia
    ZHOU Jiang-hong, XIA Fei, ZHONG Li, QIU Lan-fen, LI Guang, LIU Qian, ZHANG Guo-feng, SHAO Jin-li, LI Na, CHE Shao-chen
    2024, 40(7):  235-246.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0158
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    【Objective】 A bacterial strain CCBC3-3-1 isolated from the branch of Cotinus coggygria, has strong growth inhibition activity on the causal agent of Verticillium wilt of Cotinus coggygria. Gaining further understanding about the antagonistic mechanism of this strain at the genomic level will provide theoretical basis for developing a new biocontrol agent. 【Method】 PacBio RS sequencing platform was used to have the whole genome sequencing of CCBC3-3-1, a phylogenetic tree was constructed based on 16S rDNA sequences, comparative genomic analysis with genetically closed species was carried out, and LC-MS based untargeted metabolomics analysis were performed. 【Result】 The genome size of CCBC3-3-1 was 5.16 Mb with a GC content of 48.08%, and it contained a circular chromosome and three circular plasmids. A total of 5 013 coding DNA sequences(CDSs)were predicted. Through antiSMASH prediction, it was found that there were eight antibiotic and secondary metabolite gene clusters in the genome of CCBC3-3-1, two of which clusters had low similarity with the known ones, and five others had unknown functions. Six known antibiotics were identified in the fermentation broth of CCBC3-3-1. The results of comparative genomic analysis showed that there were significant differences between the genome of CCBC3-3-1 and other four closely related Pantoea species. CCBC3-3-1 strain formed a relatively independent branch on the 16S rDNA phylogenetic tree. 【Conclusion】 CCBC3-3-1 strain is a new variant species of Pantoea genus, which can produce various antibiotics. It has important application potential in the biological control of the Verticillium wilt of C. coggygria.

    Analysis of Differential Metabolites and Bacterial Community Structure in the Soils of a Pineapple Orchard under Different Mulching Treatments
    LIU Chuan-he, HE Han, SHAO Xue-hua, HE Xiu-gu
    2024, 40(7):  247-258.  doi:10.13560/j.cnki.biotech.bull.1985.2023-1183
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    【Objective】 The aim of this work is to investigate the effects of different mulching treatments on the soil microecological environment in pineapple orchard. 【Method】 Taking the un-mulched soil as the control(CK), the differences in physicochemical properties, microbial abundance, bacterial community structure, and metabolites of the soils of mulching treatments with polyethylene mulch(PM), non-woven fabric(NW)and biodegradable film(BF)were compared and measured, respectively. 【Result】 Compared with CK, PM significantly increased the activity of protease, whereas, decreased the activities of catalase and sucrase. NW significantly increased the content of available P, and decreased the activities of catalase and sucrase. Similarly, BF significantly increased the contents of total N, available P, and the activity of acid phosphatase, and decreased soil pH and the activities of catalase and sucrase. Compared with CK, PM significantly increased the community of actinomycetes. NW significantly increased the community of bacteria, while decreased the actinomycetes. BF significantly increased the communities of bacteria and fungi, while decreased the actinomycetes. The bacterial 16S high-throughput sequencing profiling suggested that the diversity of CK was higher than those of the three mulching treatments, and the bacteria abundance of BF was the highest among the three treatments and CK. Metabolites analysis indicated that there were 17 differential accumulated metabolites in the soils of three comparison groups with CK, mainly including carbohydrates, acids, nitrogen compounds and alcohols. And BF accumulated the highest sugar metabolites in the three mulching treatments. CCA analysis showed that soil pH affected the differentiation of bacterial community structure, and soil nutrients and enzyme activities were positively correlated with bacterial community structure. 【Conclusion】 Among the three mulching treatments, NW would benefit to maintain the relatively stable microecological environment of soil during the vegetative growth period of pineapple.

    Cloning and Bioinformatics Analysis of the Ergothioneine Biosynthesis Genes in Naematelia aurantialba and Stereum hirsutum
    SHEN Zhen-hui, CAO Yao, YANG Lin-lei, LUO Xiang-ying, ZI Ling-shan, LU Qing-qing, LI Rong-chun
    2024, 40(7):  259-272.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0116
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    【Objective】 To explore the biosynthetic pathway of ergothioneine in Naematelia aurantialba and Stereum hirsutum. 【Method】 The ergothioneine synthase gene Egt1 and Egt2 of N. aurantialba and S. hirsutum were cloned by PCR amplification technology, respectively, and their functions were analyzed by bioinformatics software. High performance liquid chromatography(HPLC)was used to identify the intermediate products of hercynine, ergothioneine and their contents in two species. 【Result】 The complete DNA sequences of Egt1 and Egt2 genes of two species were successfully cloned. The analysis using bioinformatics software revealed that Egt1 of the two species contained functional binding domains such as EgtD and SAM-dependent methyltransferase. Egt2 contained the binding sites for pyridoxal phosphate(LPL)and cysteine desulfurase. Further analysis indicated that Egt1 and Egt2 shared similar functional domains and substrate binding sites with model fungi(Schizosaccharomyces pombe and Neurospora crassa). This result showed that Egt1 and Egt2 may have similar gene functions as these model fungi. HPLC analysis revealed the presence of hercynine and ergothioneine in N. aurantialba blastospore (JEYB), S. hirsutum fermentum broth(ShFJY), S. hirsutum mycelium(ShJST)and N. aurantialba fruiting bodies(JEZST). Additionally, the ergothioneine content in the JEZST was found to be the highest at 113.19 μg/g, which was 7.45 times, 26.14 times, and 27.74 times higher than that of the JEYB, ShFJY, and ShJST, respectively. 【Conclusion】 The Egt1 and Egt2 genes of N. aurantialba and S. hirsutum were identified for the first time. It is hypothesized that the biosynthetic pathway of N. aurantialba and S. hirsutum are involved the catalysis of histidine by the Egt1 enzyme, resulting in the formation of hercynine. Subsequently, the Egt1 enzyme catalyzes the conversion of hercynine into hercynylcysteine sulfoxide. Finally, the Egt2 enzyme catalyzes the transformation of hercynylcysteine sulfoxide into ergothioneine.

    Cloning of FfCYP98 Gene and Its Functional Analysis in Folioceros fuciformis
    HUANG Dan, JIANG Shan, PENG Tao
    2024, 40(7):  273-284.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0068
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    【Objective】 Cytochrome P450 monooxygenase 98(CYP98)is a key rate-limiting enzyme in the phenylpropanoid pathway, and it is proposed to investigate whether it is involved in the biosynthesis of the phenylpropanoid pathway and in the anti-disease function in Hornworts, so as to provide a reference for the future study of the evolution of the early terrestrial plants and physiological mechanisms of adaptation to adversity stress. 【Method】 The full-length sequence of FfCYP98 cDNA was cloned from Folioceros fuciformis using RACE, analyzed for bioinformatics and subcellular localization, and functionally verified by constructing an overexpression vector to transform the Arabidopsis thaliana mutant FfCYP98-OE1. 【Result】 The FfCYP98 cDNA sequence, with an open reading frame of 1305 bp, is evolutionarily closest to the Bryophytes Anthoceros angustus and Physcomitrium patens CYP98, and subcellular localization results show that FfCYP98 is localized to both the nucleus and the cytoplasm. The overexpression of the FfCYP98 gene revealed that the expressions of total phenolics, total flavonoids, and C4H,4CL and C3H in the phenylpropanoid pathway was significantly higher in FfCYP98-OE1 plants than in A. thaliana WT plants. In addition, infestation of F. fuciformis and A. thaliana FfCYP98-OE1 plants with Botrytis cinerea revealed that the expression of FfCYP98 was significantly up-regulated, that FfCYP98-OE1 plants died significantly slower than WT plants, and that the expressions of total phenolics, total flavonoids, and four genes, C4H, HCT, C3H, and CAD in the phenylpropanoid pathway were significantly higher in A. thaliana FfCYP98-OE1 plants than in WT plants. 【Conclusion】 FfCYP98 may be involved in the biosynthesis of phenolics and flavonoids in the phenylpropanoid pathway by regulating the expressions of genes related to the synthesis of phenylpropanoid pathway, and may be related to disease resistance of plants.

    Diversity of Culturable Halophilic Bacteria in the Chloride Type Kunteyi Salt Lake in the Qaidam Basin
    MA Xiang-rong, MA Xin, CHEN Yin-xun, LONG Qi-fu, WANG Rong, XING Jiang-wa
    2024, 40(7):  285-298.  doi:10.13560/j.cnki.biotech.bull.1985.2023-1219
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    【Objective】 To explore the effects of different enrichment time, culture salinity, dilution gradient and medium on the diversity of culturable halophilic bacteria in chloride type Kunteyi high salt lake, to determine the best isolation and culture conditions for halophilic bacteria, and to explore more resources of environmental halophilic bacteria. 【Method】 The mixed water and mud samples were collected from Kunteyi Salt Lake, and 7 media with 2 salinities of 10% and 18% NaCl were selected to isolate the halophilic bacteria by enrichment culture, plate dilution coating and plate zonal delineation methods. The phylogenetic status of the strains was determined by 16S rRNA gene sequencing and BLAST sequence comparison. At the same time, culture-free Illumina MiSeq high-throughput sequencing technology was used to analyze the bacterial community structure diversity in Kunteyi Salt Lake. 【Result】 A total of 39 phyla, 64 classes, 101 orders, 219 families and 703 genera of bacteria were identified in the culture-free samples collected from Kunteyi Salt Lake. Among them, Pseudomonadota, Bacillota, Bacteroidota and Actinomycetota were the main dominant phyla. According to the size, shape, color, gloss, transparency, texture, uplift status, and marginal characteristics of the colonies, 436 strains of halophilic bacteria were isolated, belonging to 3 phyla, 3 classes, 6 orders, 9 families, 28 genera and 77 species, among which 16 strains were potential new species. The three phyla were Bacillota, Pseudomonadota and Actinomycetota, all of which were the dominant phyla in the culture-free results. At the genus level, Bacillus, Halomonas, Halobacillus, Virgibacillus and Salicola were the dominant genera. Tuberibacillus, Rossellomorea and Glutamicibacter were isolated from the salt lake for the first time. The number of strains isolated by 18% NaCl was significantly lower than that by 10% NaCl, and the diversity was low. Sporolactobacillaceae was the unique bacteriaceae isolated under this condition. Among the 7 media, 1/2 RCA medium had the best isolation results. The optimal enrichment time was 0, 7 and 60 d, and the optimal sample dilution gradients were 10-2 and 10-3. 【Conclusion】 There were 3 phyla, 3 classes, 6 orders, 9 families, 28 genera and 77 species of halophilic bacteria isolated from Kunteyi Salt Lake. The diversity of culturable halophilic bacteria could be significantly improved by using various culture media and different salinities, enrichment culture time and dilution gradients.

    Identification and Enzymatic Characterization of a Sugar Phosphatase
    QIAO Ye, ZHANG Nan, YANG Jian-hua, ZHANG Cui-ying, ZHU Lei-lei
    2024, 40(7):  299-306.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0095
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    【Objective】 High value-added monosaccharides can be synthesized through multi-enzyme cascade reactions using starch or dextrin as substrates. In the reaction systems, sugar phosphatase catalyzes the irreversible dephosphorylation reaction of the phosphorylated sugar intermediates to generate the corresponding sugars. This work is aimed to mine the new sugar phosphatase and to characterize this enzyme. 【Method】 In this study, a gene with unknown function, named as TsPase derived from the thermophilic bacterium Thermoproteus sp.CIS_19, was obtained from gene mining and screening. TsPase was found to have sugar phosphatase activity after its heterologous soluble expression with Escherichia coli BL21(DE3), purification and enzymatic characterization. 【Result】 TsPase has a Tm value of(80.3 ± 1.3)℃, while the optimal reaction temperature of 70℃ and pH of 4. Our study indicated that metal ion Mg2+ has a strong promoting effect on TsPase. With the substrate tagatose 6 phosphate kinetic constant Km is(2.40 ± 0.98)mmol/L, and the catalytic constant kcat is(102.50 ± 8.60)min-1. TsPase was integrated into an in vitro synthetic enzymatic biosystem for the one-pot production of D-tagatose from maltodextrin. The production of D-tagatose in the reaction equilibrium system was(4.26 ± 0.03)g/L and the conversion rate reach 42.6% ± 0.3%. 【Conclusion】 Overall, TsPase possesses fine thermal stability and activity, as well as high conversation rate in vitro synthetic enzymatic biosystem. These characteristics make it great value in future theoretical research and industrial production.

    Enhanced Expression of Protease K in Pichia pastoris through Molecular Chaperones and Analysis of Its Effect on Wool Scale Layer
    CAI Yi-an, ZHANG Yi-qun, YANG Zi-xuan, LIU Ye-xue, LIU Wen-long, LU Fu-ping, LI Yu
    2024, 40(7):  307-313.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0136
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    【Objective】 To augment the expression level of protease K and pave the way for the implementation of efficient enzymatic scaling technology, the co-expression of molecular chaperones was employed to enhance the secretion of the heterologous protease K in Pichia pastoris, and the mechanism underpinning its chlorine-free wool scale stripping efficacy has been meticulously investigated. 【Method】 We used the Pichia pastoris expression system to have the tprK gene heterologously expressed. Then at the first time we analyzed the effects of overexpressions of molecular chaperone Ssa1, Erj5, Sil1, Hac1, Kar2, Lhs1, and Ydj1, which affect protein folding and quality control, on the expressions and enzymatic activities of TPRK. Also we analyzed the effect of TPRK treatment on wool fibers. 【Result】 TPRK is expressed in P. pastoris GS115, and its optimal reaction conditions are 65℃ and pH 9.0, with good thermal stability and pH stability. The enzyme activities of recombinant strains overexpressing the ssa1, hac1, erj5, and sil1 genes increased by 36.8%, 20.0%, 17.7%, and 14.8%, respectively. High density fermentation was carried out in a 5 L fermentation tank, and after 72 h of induction, the TPRK enzyme activity reached 77 471.99 U/mL. In the application of wool hydrolysis, TPRK hydrolyzed the inner layer of wool scales to gradually peel them off, achieving a peeling effect. The optimal hydrolysis conditions are: TPRK addition of 300 U/mL, reaction temperature of 55℃, pH 9.0, and reaction time of 2 h. 【Conclusion】 Overexpression of molecular chaperone Ssa1 can effectively increase the expression of TPRK. Using this TPRK to process wool fibers can effectively remove the wool scale layer, while causing less damage to the core cortex layer of wool. This lays the foundation for the promotion and application of protease K in wool scale removal technology.

    Research on the Molecular Mechanism of Crayfish prx 6 in the Process of Defending against Staphylococcus aureus Infection
    JIN Bo-yang, QIN Shi-yu, ZHANG Ming-da, LI Qian-qian, WEN Jing, SHEN Xiu-li, DU Zhi-qiang
    2024, 40(7):  314-322.  doi:10.13560/j.cnki.biotech.bull.1985.2023-1205
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    【Objective】 To unravel the molecular intricacies associated with the immune modulatory role of the crayfish prx 6 gene in response to Staphylococcus aureus infection and to expound its function in the orchestration of innate immunity in crayfish, this investigation was carried out. 【Method】 The study pivoted on the prx 6 gene and harvested total RNA from diverse unstimulated crayfish tissues. The RT-qPCR was utilized to pinpoint the tissue-specific distribution patterns of this gene. Following immune provocation by S. aureus, the prx 6 gene expression dynamics within crayfish’s immune-centric tissues were monitored. The research further endeavored to gauge the relative expression of immune executor genes, specifically, Pc-crustin 3, Pc-crustin 4, Pc-ALF 9, and Pc-lectin 1 in the hepatopancreas after RNAi-mediated silencing of prx 6, in the wake of S. aureus infection. Additionally, a quantitative appraisal of the bacterial burden in crayfish hemolymph was undertaken. 【Result】 The investigations underscored an amplified expression of the prx 6 gene within the hepatopancreas as compared to other tissues. Post S. aureus infection, the prx 6 gene expression showcased substantial augmentation in the hepatopancreas, hemocytes, and intestinal tissues, with a preliminary surge of expression detected in gill tissues. In terms of survival rates, a pronounced decrement in crayfish vitality was observed after prx 6 knockdown, relative to dsGFP + S. aureus controls. To elucidate the key factors linked to escalated mortality, the expression strata of antimicrobial peptide genes integral to bacterial defense were quantified. The outcomes revealed a significant downturn in the expression of Pc-crustin 3, Pc-crustin 4, Pc-ALF 9, and Pc-lectin 1 within the hepatopancreas, seemingly tied to prx 6 repression. Intriguingly, assessment of hemolymph bacterial loads unveiled a substantial elevation in bacterial load in the prx 6 knockdown group as set against controls. 【Conclusion】 The prx 6 gene in crayfish plays a pivotal role in the antibacterial innate immune response through modulating the expressions of antimicrobial peptide genes and enhancing the clearance capabilities of bacteria from the hemolymph.

    Whole Genome Sequencing and Bioinformatics Analysis of Mycoplasma ovipneumoniae GH3-3 Strain
    TIAN Tong-tong, GE Jia-zhen, GAO Peng-cheng, LI Xue-rui, SONG Guo-dong, ZHENG Fu-ying, CHU Yue-feng
    2024, 40(7):  323-334.  doi:10.13560/j.cnki.biotech.bull.1985.2024-0076
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    【Objective】 This study is aimed to decode the genomic sequence of Mycoplasma ovipneumoniae strain GH3-3, to investigate its pathogenic potential and to elucidate the regulatory mechanisms of its replication, transcription, and translation. 【Method】 M. ovipneumoniae GH3-3 strain was cultured in vitro. When it reached the late logarithmic stage of growth, the genomic DNA of M. ovipneumoniae GH3-3 strain was extracted with bacterial genomic DNA extraction kit and sent for whole genome sequencing and commentary. 【Result】 The genome size of GH3-3 strains of M. ovipneumoniae was 1 060 772 bp, and the GC content was 29.66%. The genome component analysis showed that the genome of GH3-3 strain contained 730 coding genes, with a total length of 914 379 bp and an average length of 1 252.57 bp, accounting for 86.2% of the total genome length. There were 149 tandem repeats with a total length of 20 926 bp, accounting for 1.97% of the total length of the genome. There were 102 microsatellite DNA sequences, 30 tRNA sequences, and 3 rRNA sequences. The 719, 459, 473, 394, 449, 33, 5, 180, 113 and 59 genes were annotated in NR, SwissProt, GOG, KEGG, GO, CARD, CAZy, PHI, TCDB, and RMS databases, respectively. A total of 76 virulence factor-related genes were annotated. The genome sequence was submitted to the NCBI website with the login number: PRJNA1051969. 【Conclusion】 The complete genome information of M. ovipneumoniae GH3-3 strain was acquired, and the gene function was predicted and annotated. Furthermore, the genetic and evolutionary relationships between GH3-3 strain and other strains of M. ovipneumoniae were elucidated globally.

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