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    26 July 2026, Volume 42 Issue 7
    Research Progress in Epigenetic Regulatory Mechanisms of Virus-Plant Interactions
    WANG Wei-yan, CHAI Ye, CHEN Mei-jie, XIAO Zhu-yi, JIN Tai-cheng, YANG Li-ping
    2026, 42(7):  1-10.  doi:10.13560/j.cnki.biotech.bull.1985.2026-0081
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    Epigenetic regulation can regulate gene expression, defend against viruses, and play a crucial role in plant responses to stresses, including DNA methylation, histone modifications, RNA modifications, and chromatin remodeling. Plants mainly use post-transcriptional gene silencing (PTGS) and transcriptional gene silencing (TGS) to suppress viral replication and transmission. During long-term evolution, viruses encode various gene silencing suppressors to counteract or evade host silencing mechanisms. This paper focuses on introducing the regulatory mechanism of the RNA-directed DNA methylation (RdDM) pathway, which plays an important role in virus defense, and how silencing suppressors encoded by viruses inhibit the RdDM-mediated defense mechanism. This paper systematically reviews how histone modifications and RNA modifications participate in the regulation of plant growth, development, and immunity, and summarizes, based on our previous study, that plants use DNA demethylation to regulate the expression of defense genes in the salicylic acid pathway and to enhance systemic acquired resistance (SAR). This review aims to provide new strategies for crop stress breeding by discussing and analyzing the interaction mechanisms between viruses and host epigenetic regulation, and how to use epigenetic regulation to enhance plant adaptation to stresses.

    Advances in the Regulation of Glucose and Lipid Metabolism by Tryptophan and Its Metabolites
    WANG Dan, HUANG Hong-jie, CAO Sui-zhong, HUANG Yi-xin
    2026, 42(7):  11-21.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1029
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    Tryptophan (Trp) is an essential amino acid that generates a diverse array of bioactive metabolites via the kynurenine, serotonin, and indole pathways, participating extensively in physiological processes such as oxidative stress, inflammatory responses, and immune responses. Recent studies indicate that Trp metabolism serves not only as a pivotal hub maintaining host health and gut micro-ecological balance, but its dysregulation is also closely associated with the onset and progression of a spectrum of metabolic diseases, including obesity, type 2 diabetes mellitus (T2DM), hyperlipidemia, and metabolic dysfunction-associated fatty liver disease (MAFLD). Trp metabolism influences disease progression by modulating glucose and lipid metabolism, insulin signal transduction, and immune homeostasis. Targeting the activity of rate-limiting enzymes in Trp metabolism—such as tryptophan 2,3-dioxygenase (TDO), indoleamine 2,3-dioxygenase (IDO), and kynurenine 3-monooxygenase (KMO)—can intervene in the production of key metabolites, thereby correcting metabolic imbalances, alleviating inflammation, or improving cellular function. This approach holds promise as a novel therapeutic strategy for various diseases. This review focuses on the pathophysiological functions of key Trp metabolites and systematically summarizes the organ-specific regulatory mechanisms of Trp metabolism in the liver, intestine, adipose tissue, and pancreas. It elucidates the pro-inflammatory effects and insulin resistance associated with kynurenine, the dual regulatory roles of serotonin in glucose and lipid metabolism, and highlights the capacity of gut microbiota-derived indole derivatives, such as indolepropionic acid, to alleviate metabolic disorders via anti-inflammatory, antioxidant, and gut barrier protection mechanisms. Furthermore, this article explores the inter-organ communication mechanisms where Trp metabolites act as signaling molecules to regulate hepatic lipid metabolism and inflammation via the “gut-liver axis”, and modulate appetite and energy balance via the “gut-brain axis”. These insights aim to provide a theoretical basis for the diagnosis and treatment of diseases related to glucose and lipid metabolic disorders.

    Research Progress in Microbial Community Succession and Its Regulation of Fermentation Quality in Ensiled Total Mixed Rations
    TANG Xin-rui, XU Zhuo-hang-xu, GUO Lin-na, GUAN Er-qi, JIANG Di
    2026, 42(7):  22-33.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0907
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    Ensiled total mixed ration (TMR) is a pivotal technology designed to enhance the nutritional value and preservation of livestock feed by leveraging controlled lactic acid bacteria (LAB) fermentation of precisely formulated rations, based on the nutritional needs of livestock during their growth process and the nutritional value of raw materials. The ultimate fermentation quality and aerobic stability of ensiled TMR are inextricably linked to the composition of its resident microbial communities. During the ensiling process, microbial metabolism profoundly impacts the fate of key nutrients, including proteins and structural carbohydrates. Beneficial microorganisms, predominantly LAB, convert carbohydrates into organic acids, a process fundamental to augmenting the nutritive value and, critically, the aerobic stability of the final product. Conversely, the proliferation of detrimental microorganisms, particularly yeasts and molds, poses significant risks of aerobic spoilage and mycotoxin contamination upon feed-out. This review synthesizes current research on the microbial community succession during both the anaerobic fermentation and aerobic exposure phases of ensiled TMR. Then the review critically discusses the mechanisms through which microbial succession influences nutrient transformation, utilization, and digestibility, as well as overall feed safety. The insights provided herein aim to establish a theoretical framework for the development of novel, targeted inoculants and the optimization of ensiled TMR processing and control strategies.

    Regulation of Metabolic Flux at the Pyruvate-acetyl-CoA Node in Microalgae and Strategies for Enhancing High-value Product Synthesis
    ZHANG Shu-han, REN Hai-wei, LU Dong, LUO Guang-hong, WANG Yong-gang, GUO Xiao-peng
    2026, 42(7):  34-47.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1141
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    Microalgae are recognized for their ability to fix carbon dioxide, proliferate rapidly, and synthesize a wide range of high-value-added products, making them preferred green cell factories. Considerable attention is focused on enhancing productivity through strain improvement and process optimization. However, although numerous effective strategies have been proposed and implemented, the development and application of integrated approaches remain insufficient to meet the demands of large-scale microalgae-based manufacturing. Based on microalgal carbon metabolism pathways, this review focuses on two core metabolic hubs: pyruvate, acetyl-CoA and examines key rate-limiting enzymes and encoding genes in the upstream and downstream pathways for synthesizing high-value-added products. Meanwhile, it systematically discusses regulatory strategies for improving the production efficiency of high value-added products, along with the corresponding signaling mechanisms and metabolic networks. These strategies primarily encompass optimizing light conditions, carbon dioxide concentration, carbon source types, supplementary exogenous additives, stress intensity, and algal-bacterial interactions within the macro-level cultivation system; as well as implementing genetic improvements such as mutagenesis breeding, genetic engineering, and epigenetic modifications at the strain level. These strategies aim to achieve an optimal balance among microalgal growth, stress response, and product accumulation, thereby enhancing precursor supply and directing metabolic flux toward target product synthesis. Furthermore, driven by artificial intelligence technology, the synthetic capability of high-value-added microalgae products is expected to achieve systematic enhancement across multiple dimensions, including identification of rate-limiting steps, prediction of gene-editing targets, and remodeling of metabolic flows. Concurrently, it aims to achieve real-time monitoring of key parameters in the cultivation system, dynamic regulation, database construction, and iterative improvement. Driven by intelligent technologies and relying on the integration of multi-dimensional strategies, it is expected to further advance green biomanufacturing based on microalgal cell factories.

    Strategies for Avian Influenza Mucosal Vaccine Development: Insights from the Avian Mucosal Immune System
    ZHU Mei-wei, ZHANG Jian-feng, WANG Jia-min, LIAO Ming, DU Shou-wen
    2026, 42(7):  48-57.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0956
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    The features of the avian mucosal immune system include diffuse lymphoid tissues, humoral immunity mediated by immunoglobulin Y (IgY), innate immune signaling pathways dependent on chicken melanoma differentiation-associated gene 5 (MDA5), as well as a common homing and mucosal immune system. Currently, traditional inactivated vaccines are ineffective in blocking mucosal infection by avian influenza virus (AIV). In contrast, mucosal vaccines demonstrate significant advantages by eliciting local mucosal immunity. Studies have shown that live vaccines based on reverse genetics-optimized rClone30 vectors can induce antibody titers against Newcastle disease virus (NDV) and AIV exceeding the protective threshold of 4 log2 by day 7 post-immunization, with both antibody persistence and the intensity of cellular immune responses surpassing those of commercial inactivated vaccines. Furthermore, various technological platforms—including cold-adapted attenuated live vaccines, recombinant lactobacillus vaccines, combined strategies of mucosal DNA vaccines and inactivated vaccines, and chitosan nanoparticle-delivered mRNA vaccines—can all induce high levels of specific antibodies and mucosal sIgA, and effectively activate CD4⁺ and CD8⁺ T-cell responses. In challenge experiments, these immune responses reduced the positive rate of oropharyngeal swab virus detection from 100% to 50%, achieved 100% protection, and significantly decreased viral shedding and lung lesions. This article reviews the organization and functional mechanisms of the avian mucosal immune system, with a focus on respiratory mucosal immunity, and analyzes the current progress, application status, and challenges in the development of avian influenza mucosal vaccines. The key to future prevention and control lies in deepening the understanding of mucosal immune mechanisms and optimizing vaccine design and delivery to promote the clinical translation of highly effective and broad-spectrum mucosal vaccines.

    Advances in Bacteriophage-nanomaterial Synergistic Systems for Antimicrobial Applications against Multidrug-resistant Bacteria
    WANG Ming-teng, YOU Xiao-juan, KONG Jun-ke, LI Yong-wei, ZHANG Sha-sha, WANG Qing-feng
    2026, 42(7):  58-66.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0955
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    The continuous global spread of multidrug-resistant bacteria poses a serious threat to public health, while the effectiveness of conventional antibiotics continues to decline, underscoring the urgent need for alternative antimicrobial strategies. Bacteriophages exert precise antibacterial activity by specifically recognizing and lysing host bacteria; however, their application is constrained by a narrow host range, limited in vivo stability, and immune clearance. Nanomaterials present broad-spectrum antibacterial effects through mechanisms such as membrane disruption and reactive oxygen species generation, but challenges remain regarding targeting efficiency and biocompatibility. Synergistic antibacterial systems constructed by integrating bacteriophages with nanomaterials can significantly enhance the suppression of drug-resistant bacterial infections. Focusing on the synergistic antibacterial effects of bacteriophages and nanomaterials, current studies have developed several representative combination strategies. Based on a systematic review of relevant research progress, this paper summarizes and compares the characteristics, application scenarios, and research limitations of different synergistic modes. Currently, the clinical translation of this strategy is still challenged by factors such as phage immunogenicity, biocompatibility of nanomaterials, consistency of large-scale preparation, and quality control. Future research should focus on the directed evolution and modification of bacteriophages, the development of biodegradable nanocarriers, and the establishment of standardized production workflows, thereby facilitating clinical translation and providing new avenues for the control of multidrug-resistant bacterial infections.

    Research Progress in the Expression of Recombinant Proteins in Endosperm Bioreactors
    LI Can-ni, PAN Wei-song, WU Tai-ru, WU Chuan, Keung Eric Tsang Po, LI Wei-zhan
    2026, 42(7):  67-80.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1022
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    The plant expression system has emerged as an ideal platform for producing recombinant proteins and bioactive metabolites—such as therapeutic proteins, vaccines, enzymes, antibodies, vitamins, flavonoids, and carotenoids—due to its low cost, sustainability, scalability, safety, and environmental friendliness. Among these systems, the plant endosperm is considered as a high-quality bioreactor for synthesizing and storing active substances because of its natural biosynthetic and storage capabilities. This article provides a systematic review of the applications of plant endosperm bioreactors in molecular agriculture and highlights their comprehensive advantages compared to other mainstream expression systems. It focuses on recent research advancements and practical applications involving the production of therapeutic proteins, enzymes, antibodies, and vaccines using endosperm bioreactors. To address the challenge of low expression levels of target proteins in the endosperm system, the article explores optimization strategies aimed at enhancing transcription efficiency. Furthermore, it systematically analyzes the use of glycosylation metabolic engineering to achieve humanized modifications, thereby mitigating the immunogenicity issues associated with plant-derived drugs. Finally, the article discusses key factors currently limiting the commercialization of transgenic plant-derived products, such as regulatory hurdles, public acceptance, and purification costs, and offers a forward-looking perspective on the future development of this technology, emphasizing its significant potential for producing high-value bioproducts using endosperm.

    Research Progress in Liquid-liquid Extraction Technology for In Situ Extraction of Medium Chain Carboxylic Acids
    WANG Ting, XU Shao-qin, MING Ting-hong, XU Jia-jie
    2026, 42(7):  81-96.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1171
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    Medium chain carboxylic acids (MCCAs), as high-value platform chemicals, show extensive applications in food, chemical, pharmaceutical, and biomaterial industries due to their unique physicochemical properties. There are numerous technical bottlenecks, including high dependence on petrochemical resources, low product yield and purity, high energy consumption, and poor stability of the vegetable oil raw material supply chain in traditional chemical synthesis methods for producing MCCAs. Existing production capacity can no longer meet the rapidly growing market demand. Therefore, the application of microbial carbon chain elongation technology to convert waste biomass into high-value MCCAs not only facilitates the recycling of organic carbon sources, but also mitigates reliance on fossil resources. This synergistically integrates environmental sustainability, economic viability, and industrial scalability, positioning it as a highly promising strategy in green biomanufacturing. However, the efficient separation technology for microbial carbon chain elongation-derived MCCAs is still a critical bottleneck. Among various separation technologies, liquid-liquid extraction stands out with its significant advantages, demonstrating considerable potential for in situ extraction and purification of MCCAs. This review begins with the metabolic pathway of microbial carbon chain elongation for MCCAs synthesis. Through a comparative analysis of several in-situ separation technologies for MCCAs, it systematically reviews the technical principles, process parameters, key influencing factors, and bottlenecks in scale-up application of liquid-liquid in-situ extraction of MCCAs. In the future, the large-scale application of MCCAs production technology can be facilitated through innovations in extractant formulations and digital upgrades to online extraction processes, thereby contributing to the achievement of the “dual carbon” goal.

    Establishment of Hairy Root Genetic Transformation System in Xanthoceras sorbifolium Mediated by Agrobacterium rhizogenes
    ZHOU Tao, LI Ya-qiang, HE Hui-juan, HU Hai-fang, CHEN Tong-seng, PAN Yue, WANG Tian-bin
    2026, 42(7):  97-104.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1162
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    Objective Xanthoceras sorbifolium is a woody oil crop with both ecological restoration and economic value, and characteristic of Northwest China. Establishing an efficient hairy root genetic transformation system for X. sorbifolium may provide technical support and research foundation for gene function validation and the targeted breeding of stable, high-yielding superior varieties through molecular breeding techniques. Method Using the hypocotyls of four superior X. sorbifolium seedling genotypes and five Agrobacterium rhizogenes strains as experimental materials, the cut-soak-bud method was employed to induce transgenic hairy roots to > 2 cm in length. Phenotypic observation, PCR and sequencing techniques were utilized to evaluate the expression and editing efficiency of the gene in this technical system. Result Using the RUBY gene as the reporter gene, the selected most suitable strain of A. rhizogenes was K599, with the plant induction rate of 81.67% and the positive rate of over 51.64% for the transgenic hairy roots. The successful integration of the RUBY gene into the genome of X. sorbifolium hairy roots were detected by PCR amplification and RT-qPCR quantitative methods. Using the GUS-GFP gene as the reporter gene, the transgenic hairy root was stained to be blue with GUS staining solution and observed with obvious green fluorescence under the microscope, further confirming that this technical system can be used for gene expression and functional localization research. In addition, the CRISPR/Cas9 gene editing vector for the XsPDS3 gene was constructed, and its target editing efficiency was detected to be 20% through sequencing, demonstrating the potential of this system in gene editing. Conclusion This study established a simple and efficient genetic transformation system for the hairy roots of Wenguan fruit, providing a key technical platform for gene function verification of Wenguan fruit. It is expected to establish a genetic transformation system for Wenguan fruit through root regeneration for genetic improvement.

    Construction and Validation of a Visualization System for Plants Heavy Metal Response
    PENG Yan, AN Chen, SHAO Ye, MAO Bi-gang, ZHANG Xue-wen, ZHAO Bing-ran
    2026, 42(7):  105-115.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0804
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    Objective To develop a visual monitoring system for heavy metal ions inside plants and achieve rapid detection of heavy metal ions in rice (Oryza sativa). Method Based on the principle that metal-responsive transcription factors (MTF-1) specifically bind to metal-responsive elements (MREs) and activate transcription, a metal-responsive plant expression vector with β-glucuronidase (GUS) or enhanced green fluorescent protein (EGFP) as reporter genes was constructed, and it was introduced into rice and Arabidopsis thaliana using the Agrobacterium-mediated method. By treating the transgenic plants with different concentrations of heavy metal ions, the intensity of GUS staining or fluorescence signal was observed. RNA-seq was used to analyze the differential gene expression of transgenic rice and wild-type control before and after heavy metal treatment. The antioxidant enzyme activities and phenotypic verification were used to analyze the metal tolerance of transgenic rice and wild-type control. Result After being treated with different concentrations of As3+, Cd2+, and Cu2+ solutions, obvious GUS staining or green fluorescence signals were observed in transgenic A. thaliana or rice. In addition, the expressions of heavy metal detoxification-related genes in transgenic rice were significantly higher than those in the control, and the activities of superoxide dismutase (SOD) and peroxidase (POD) were enhanced. Conclusion A visualization system responding to heavy metal ions was initially constructed in rice and A. thaliana, providing technical support for the rapid detection of heavy metals in rice.

    Analysis on Function of Rice OsSULTR2;2 and Regulation of Seedling Tolerance to Salt
    CHEN Yi-yan, ZHANG Dong-er, ZHANG Tao, LIU Yu-hao, TANG Jie, SHENG Xia-bing, HU Yuan-yi, AI Zhi-yong, LI Ying-jiang, LIU Xiao-lin
    2026, 42(7):  116-125.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1144
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    Objective To elucidate the function of gene OsSULTR2;2 and its role in regulating tolerance to salt stress during rice (Oryza sativa L.) seedling development. Method Using the indica rice variety Jing 4155S as material, the response gene OsSULTR2;2 was screened from the transcriptome data of the root before and after salt treatment. Its expression patterns were characterized using quantitative real-time PCR. A promoter-GUS fusion vector for histological localization and CRISPR/Cas9-mediated knockout mutants was constructed. The gene and promoter expression patterns were predicted using the RiceXPro and RGAP online databases. Promoter activity was validated through GUS histochemical staining. Phenotypic assessments under 140 mmol/L NaCl stress included survival rate and plant height measurements. Additionally, superoxide anion (O₂⁻) and hydrogen peroxide (H₂O₂) accumulation in the leaves were detected by nitroblue tetrazolium (NBT) and 3,3'-diaminobenzidine (DAB) staining, respectively. Result OsSULTR2;2 transcription was significantly upregulated after salt treatment, with GUS staining demonstrating constitutive promoter activity across multiple tissues. Compared to wild-type plants, OsSULTR2;2 knockout mutants showed markedly improved survival rates and plant height under salt stress. Furthermore, these mutants showed substantially reduced accumulation of reactive oxygen species (ROS) in the leaves. Conclusion Targeted disruption of OsSULTR2;2 enhances salt tolerance in rice by augmenting cellular ROS scavenging capacity. This study provides molecular evidence for OsSULTR2;2 function in stress physiology and offers potential strategies for developing salt-resilient rice varieties.

    Genome-wide Identification and Expression Pattern Analysis of ZmDIR Gene Family in Maize
    YAN Xiao-guang, DU Yan-wei, MA Zhi-yuan, WANG Bin, WANG Guo-liang, HU Dan-zhu
    2026, 42(7):  126-137.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0959
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    Objective Dirigent (DIR) genes play important roles in plant growth, development and environmental adaptation. The objectives of this study are to identify the ZmDIR gene family in maize (Zea mays) and to preliminarily reveal its potential role in stress defense, thereby providing a theoretical basis for further research. Method Bioinformatics were used to identify the members of the ZmDIR family and systematically analyzed their conserved motifs, conserved domains, chromosomal distribution, gene duplication events, cis-regulatory elements in promoter regions and phylogenetic relationships. Transcriptome data were further employed to elucidate the expression patterns of these genes across different tissues and under both abiotic and biotic stresses. Result A total of 41 ZmDIR genes were identified in the maize genome and distributed across all 10 chromosomes and contain zero to four introns, 78% of them shared the core conserved motif 1, motif 2 and motif 4. Phylogenetic analysis indicated that DIR proteins in maize can be classified into six subgroups. Gene duplication analysis revealed that segmental and tandem duplications were the main driving forces for the expansion of this family. Promoter analysis revealed that ZmDIR genes were enriched with cis-acting elements involved in plant growth and development, phytohormone response, environmental stress and light response. Tissue-specific expression profiles revealed that ZmDIRs were differentially expressed in the roots, stems, leaves, leaf tip, leaf base, embryo, endosperm, anther, tassel and ear. The expression pattern of these genes appeared to be diverse in the different developmental tissues. Transcriptome data confirmed the differential expression of ZmDIR under abiotic (heat, salt, UV, cold, drought and WS) and biotic stress (Colletotrichum graminicola). RT-qPCR analysis validated the specific dynamic changes in selected ZmDIR genes under salt (NaCl), cold (4 ℃), drought (PEG) and Colletotrichum graminicola stresses. Conclusion This study identified 41 ZmDIR genes in the maize genome. This gene family responds extensively to both biotic and abiotic stresses. Six key genes showed significant differential expression under adverse stresses. providing targets for elucidating the stress resistance mechanisms of key members and for molecular breeding.

    Mapping and Candidate Gene Analysis of the Major Gene Controlling Seed Shattering in Foxtail Millet Based on BSA-Seq
    LIU Qian, WANG Zong-yan, LUO Jun-hao, WU Zhang-zhang, HU Zhen, LYU Jian-zhen, JIANG Liang
    2026, 42(7):  138-147.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1249
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    Objective Seed shattering is a crucial artificially - selected trait in the process of crop domestication. Mapping and cloning the major gene regulating seed shattering provides a theoretical basis and application value for clarifying the genetic basis of foxtail millet domestication and developing molecular marker - assisted breeding tools. Method The easily-shattering germplasm resource YLL5 and the shattering - resistant modern cultivar Jigu 42 (Si42) were taken as the research objects. Paraffin sectioning was used to compare the differences in the cell structure and cell-wall components of the abscission zone between the two parents. To map the gene controlling seed shattering, an F₄ genetic population was constructed. BSA-Seq (Bulked segregant analysis sequencing) was carried out, and in combination with linkage analysis methods such as ED, G′ value, SNP-loess, and SNP-index, the loci related to the trait were preliminarily mapped. The annotated genes in the mapped interval were screened, and quantitative reverse-transcription PCR (RT-qPCR) was used to verify the expression differences of candidate genes in multiple tissues of the two parents. Result The results of paraffin sectioning showed significant differences in cell arrangement, tissue structure, and cell wall components between YLL5 and Si42. Through association analysis, the locus controlling the target trait was preliminarily mapped to chromosome 5 (3.3 Mb) and chromosome 8 (1.1 Mb). Using InDel markers, the target interval was finely mapped to a region of approximately 0.3 Mb on chromosome 5. A total of 25 genes were annotated in this interval, and genes with high expression in the panicle were screened out. RT-qPCR analysis indicated that the expression level of the candidate gene Seita.5G087200 in the panicle and spikelet tissues of the easily-shattering parent YLL5 was significantly higher than that in Si42, and its expression pattern was highly consistent with the shattering phenotype. Sanger sequencing further revealed a transposon-insertion variation in the second exon of this gene. A molecular marker developed based on this variation could effectively distinguish different shattering phenotypes, showing potential for application in molecular marker-assisted selection. Conclusion Seita.5G087200 is likely a key candidate gene regulating the seed-shattering trait in foxtail millet.

    Whole-genome Identification of the Perilla frutescens ARF Transcription Factor Family and Functional Analysis of Its Role in Abiotic Stress Responses
    HUANG Xu-sheng, ZHOU Ya-li, JIA Zheng-rong, SHEN Shan, CHEN Jin-chai, ZHOU Guang-li, LI Xin-xin, WANG Ji-ping, LI Run-zhi, JIA Xiao-yun
    2026, 42(7):  148-162.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0877
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    Objective Auxin response factor (ARF) plays a crucial regulatory role in plant hormone signal transduction and abiotic stress responses. The genome-wide identification of the Perilla frutescens PfARF transcription factor (TF) family and the analysis of the expression characteristics of related genes under abiotic stress provide a theoretical basis for elucidating the function of PfARF in the stress response of perilla. Method The PfARF members were identified from the genome of perilla, and their chromosomal location, phylogenetic evolution and conserved structures were analyzed using omic tools, such as TBtools, MEGA11, NCBI-CD Search, et al. The expressions of PfARF genes in the developing seeds of perilla and in the seedlings under abiotic stress was analyzed through RNA-seq and RT-qPCR. The PfARF22 gene was obtained using molecular cloning technology, and the subcellular localization of its encoded protein was detected by transient transformation in Nicotiana benthamiana leaves. A protein interaction network diagram of the PfARF22 TF was constructed, and its binding sites, binding energies, and other parameters were analyzed using molecular docking technology. Result A total of 29 PfARF family members were identified in perilla, which were classified into four subgroups. PfARF members in the same subgroup exhibited similarities in their conserved motifs and gene structures, and segment duplication was the main driving force for their evolution and expansion. PfARF genes showed differential expression in the developing seeds of perilla and in the abiotic stress conditions of the seedlings. The expression of PfARF22 gene significantly increased under low temperature and drought stress conditions. Subcellular localization analysis revealed that PfARF22 was located in nucleus. The molecular docking results indicated that PfARF22 and PfMADS1 cooperatively regulated biological processes such as the growth and development of perilla and responses to abiotic stress. Conclusion Perilla PfARF TF family consists of 29 members. PfARF22 has potential regulatory effects on the growth and development of perilla as well as responses to stress conditions such as low temperature and drought.

    Genome-wide Identification and Characterization of UDP-glycosyltransferase Gene Family in Gastrodia elata
    RAN Dan-dan, TAI Sen-lin, OU Xiao-hong, ZHOU Tao, XU Jiao
    2026, 42(7):  163-172.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1156
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    Objective UDP-glucosyltransferase (UGT)-mediated glycosylation is a critical step in plant pigment biosynthesis. This study aimed to identify and analyze the structure and function of the UGT gene family in Gastrodia elata Bl. f. glauca S. Chow, providing a foundation for investigating the molecular mechanisms underlying stem color formation in different G. elata ecotypes. Method UGT genes were identified using BLAST alignment combined with searches against the Pfam and InterPro databases. TBtools software was employed to analyze their physicochemical properties, structural characteristics, chromosomal localization, phylogenetic relationships, synteny, and cis-acting elements. Based on transcriptomic data, RT-qPCR, total flavonoid content assays, and co-expression network analysis, key UGT genes involved in stem color formation were identified. Result Fifty UGT genes were identified in the G. elata Bl. f. glauca S. Chow genome, and all contained the conserved UDPGT domain. Phylogenetic analysis classified them into 10 groups, with clades Ⅲ and Ⅳ having the largest number of members, and some members showing clustered distribution on chromosomes. The UGT promoter regions were enriched with light-responsive and hormone-responsive cis-elements. Synteny analysis identified 22 and 1 collinear UGT gene pairs between G. elata Bl. f. glauca S. Chow and Dendrobium officinale as well as Arabidopsis thaliana, respectively. Significant differences were observed in the relative expressions of UGT genes and total flavonoid accumulation varied among stems of different G. elata ecotypes. Specifically, GeUGT72_04, GeUGT73_11, and GeUGT73_15 had distinct expression patterns across the three ecotypes, showing significant correlations with total flavonoid content. Co-expression network analysis demonstrated that GeUGT73_15 was significantly positively correlated with flavonoid biosynthesis genes such as PER42 and FLS. Conversely, GeUGT73_11 was significantly negatively correlated with genes including CHS_1 and 4CL. Conclusion Stem color differences among different G. elata ecotypes are closely associated with flavonoid accumulation. GeUGT72_04, GeUGT73_11, and GeUGT73_15 may regulate flavonoid biosynthesis in G. elata stems and participate in the regulatory process of stem color formation, serving as key candidate genes for mediating G. elata stem color differentiation.

    Analysis of Response of Lycoris radiata Leaves to Heat Stress Revealed by Untargeted Metabolomics
    YOU Xin, WANG Xi, ZHANG Xin-yu, WEI Xu-ying, CHENG Hua, CAI Jun-huo
    2026, 42(7):  173-181.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0874
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    Objective To decipher the metabolic response characteristics and associated pathways in Lycoris leaves under heat stress, and to provide a theoretical basis for cultivating new Lycoris germplasm that can tolerate extreme high-temperature habitats. Method Using Lycoris radiata as plant material, heat stress treatment was conducted at 42 ℃ in a controlled environment chamber. Leaf samples were collected at 0 h (control), 6 h, and 12 h after treatment initiation, followed by untargeted metabolomics profiling via LC-MS technology. Result Across three comparison groups (HS_6 h vs HS_0 h, HS_12 h vs HS_0 h, and HS_12 h vs HS_6 h), 338, 426, and 262 differential metabolites were identified, respectively. During early heat stress (42 ℃, 6 h), metabolic activity was significantly suppressed overall. Conversely, prolonged exposure (42 ℃, 12 h) triggered a metabolic reprogramming shift dominated by up-regulation. Further analysis revealed that lipids, amino acids and derivatives constituted the major classes of differential metabolites under heat stress. Notably, lipids were mainly down-regulated during the initial phase of heat stress, whereas amino acids and derivatives showed significant up-regulation and accumulation in the later stress stage. KEGG pathway enrichment analysis revealed that heat stress-induced differential metabolites were primarily enriched in: Lipid metabolic pathways driven by phosphatidylcholine hydrolysis (encompassing four sub-pathways: Linoleic acid metabolism, arachidonic acid metabolism, alpha-linolenic acid metabolism, and glycerophospholipid metabolism), amino acid metabolic pathways characterized by significant accumulation of multiple amino acids (e.g., L-proline, L-phenylalanine) (involving three core sub-pathways: Aminoacyl-tRNA biosynthesis, D-amino acid metabolism and phenylalanine metabolism) and biosynthesis of secondary metabolites. Conclusion L. radiata employs a synergistic strategy combining “lipid-mediated sustained regulation of membrane homeostasis” with “reinforcement of amino acid-driven defense networks in later stages” to collectively establish its thermal adaptation network.

    Research on the Function of LrCYP78A5 Gene from Lycium ruthenicum in Response to Drought and Salt Stress
    WANG Hong-rui, ZHAO Yi-ru, RAO Shu-pei, CHEN Jin-huan
    2026, 42(7):  182-192.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1127
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    Objective This study characterized the cytochrome P450 gene LrCYP78A5 from Lycium ruthenicum to understand its role in abiotic stress tolerance. Method LrCYP78A5 was expressed in transgenic yeast and L. ruthenicum plants. Stress responses were evaluated under 0.5 mol/L mannitol and 0.8 mol/L NaCl (yeast) and 10% PEG-6000/300 mmol/L NaCl (plants). Physiological parameters including relative water content, chlorophyll content, malondialdehyde (MDA) levels, and antioxidant enzyme activities were measured. Detached leaf assays were conducted to analyze phenotypic changes and ROS accumulation. RNA-seq identified differentially expressed genes (DEGs) followed by GO and KEGG enrichment analysis. Result Heterologous expression of LrCYP78A5 significantly enhanced stress tolerance in yeast, with transgenic strains showing improved growth under osmotic and ionic stress. In L. ruthenicum, overexpression lines maintained approximately 40% higher relative water content, more stable chlorophyll levels (approximately 25% less reduction), 30% lower MDA accumulation, and 15%‒20% higher SOD and POD activities under stress compared to wild-type. Detached leaves of overexpression lines exhibited enhanced anthocyanin accumulation and significantly less ROS production under stress conditions. RNA-seq identified 595 differentially expressed genes (DEGs) enriched in ion transport (ABCG transporters), ROS scavenging (glutathione reductase and GST genes), and plant signal transduction (AOS3-like and zeatin O-glucosyltransferase). These molecular changes correlated with improved membrane stability and reduced oxidative damage in transgenic plants. Conclusion LrCYP78A5 functions as a positive regulator of abiotic stress tolerance in L. ruthenicum through coordinated regulation of multiple defense mechanisms. The gene enhances water retention capacity, maintains photosynthetic pigment stability, strengthens antioxidant systems, and promotes membrane lipid remodeling under drought and salt stress conditions.

    Transcriptome-wide Identification of the GRAS Gene Family in Mulberry and Analysis of MnGRAS22 in Response to Salt Stress
    DONG Ya-ru, XIU Yu, ZHAO Dong-xiao, ZHU Hong, ZHU Lin, LIU Hui-fen
    2026, 42(7):  193-203.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1191
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    Objective This study aimed to identify members of the MnGRAS gene family in mulberry (Morus alba), clarify their expression patterns and functional characteristics in response to salt stress, and provide theoretical support for the genetic improvement of salt tolerance in mulberry. Method MnGRAS genes were screened from mulberry transcriptome data under salt stress. Bioinformatic analyses were conducted to characterize their physicochemical properties, phylogenetic classification, gene structural features, and promoter cis-acting elements. Gene expression patterns were verified by integrating transcriptome data with RT-qPCR. The overexpression and RNA interference (RNAi)-mediated suppression systems of MnGRAS22 were constructed, and its salt-tolerance function was elucidated by determining physiological and biochemical indices. Result A total of 40 MnGRAS genes were successfully identified and classified into 10 subfamilies, with all members containing the typical GRAS domain. Promoter regions were enriched with cis-acting elements associated with growth, development, and abiotic stress responses. Under salt stress, 92.5% genes showed detectable expression signals, while only a few genes (MnGRAS11, MnGRAS27, MnGRAS34) had no expression at any stress time point. Among the 9 candidate genes, 66.7% were continuously upregulated in the leaves, whereas most showed dynamic expression patterns in the roots and stems. Specifically, the expressions of MnGRAS22 in the leaves and roots were 88-fold and 36-fold higher than those in the control, respectively. The overexpression of MnGRAS22 activated the expressions of oxidase genes (SOD, POD), significantly increased the activities of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) in plants, promoted proline accumulation, and reduced the contents of malondialdehyde (MDA), superoxide anion radical (O2•-), and hydrogen peroxide (H₂O₂). Conclusion Forty MnGRAS genes were identified in mulberry, among which MnGRAS22 was highly expressed in the leaves and roots under salt stress. The overexpression of MnGRAS22 can significantly enhance plant salt tolerance by improving antioxidant capacity, regulating osmotic balance, and alleviating membrane damage.

    Functional Study of Salix matsudanaSmERF B2-8 Gene in Response to Waterlogging Stress
    LI Meng-ru, QIAN Chao-nan, KAN Si-wei, LIU Guo-yuan, ZHANG Jian, CHEN Yan-hong
    2026, 42(7):  204-213.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1134
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    Objective This study aimed to elucidate the biological function of the SmERF B2-8 gene in Salix matsudana Koidz. in response to waterlogging stress and verify whether it is a key factor regulating the tolerance to waterlogging. Method The SmERF B2-8 gene in S. matsudana Koidz. was cloned and analyzed bioinformatically. RT-qPCR was performed to measure its expression in different Salix varieties under waterlogging at various time. The overexpressing vector of SmERF B2-8 was further constructed and transgenic Arabidopsis thaliana was obtained. The study on the hypoxic stress response of A. thaliana was conducted. Concurrently, a gene silencing vector was constructed to conduct VIGS experiments on S. matsudana Koidz. andthe biological function of the gene under waterlogging stress was systematically verified. Result The coding sequence (CDS) of the SmERF B2-8 gene in S. matsudana Koidz. is 948 bp in length. Analysis of the promoter region of SmERF B2-8 revealed the presence of oxygen-related cis-acting elements. RT-qPCR results showed that the expression of the SmERF B2-8 gene increased with prolonged waterlogging time, with significantly upregulated expression at 12 h compared to 0 and 4 h. Transgenic Arabidopsis experiments showed that, SmERF B2-8-overexpressing transgenic Arabidopsis exhibited better tolerance to hypoxia stress, compared to wild-type Arabidopsis. VIGS experimental results demonstrated that when the SmERF B2-8 gene was silenced in S. matsudana Koidz., the tolerance to waterlogging stress was significantly reduced compared to the control group. Conclusion The SmERF B2-8 gene promoter in S. matsudana Koidz. contains hypoxia-responsive cis-acting elements, and its gene expression is upregulated after waterlogging stress. SmERF B2-8 transgenic A. thaliana exhibits enhanced hypoxia tolerance, while silencing of this gene in S. matsudana Koidz. reduced its tolerance to waterlogging. SmERF B2-8 gene in S. matsudana Koidz. is a positive regulatory factor in response to waterlogging stress.

    Genome-wide Identification and Expression Analysis of MYC Transcription Factors in Cinnamomum camphora
    XIN Qing, ZHENG Yong-jie, LI Yu-hua, TU Bai-lian, LIU Xin-liang, ZHANG Yue-ting, WU Yan-fang
    2026, 42(7):  214-225.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0889
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    Objective MYC transcription factors (TFs) are core regulators of the jasmonic acid (JA) signalling pathway and play crucial roles in modulating plant growth, development, and secondary metabolism. Identification and analysis of MYC TFs in Cinnamomum camphora will provide a theoretical basis for investigating the biosynthesis of terpenoids and other secondary metabolites, as well as plant growth and development. Method Bioinformatics approaches were employed to perform genome-wide identification of the CcMYC family, including chromosomal localization, physicochemical properties, subcellular localization, phylogenetic relationships, gene structure, promoter regions, and protein-protein interaction (PPI) networks. Combined with quantitative real-time PCR (RT-qPCR), the expression patterns of the CcMYC gene family in six chemotypes of C. camphora was analyzed. Result CcMYC1-CcMYC12 were unevenly distributed across the 10 chromosomes. Proteins encoded by the CcMYC family contained 629 amino acids, an average molecular mass of 69.64 kD, and theoretical isoelectric points ranging from 5.15 to 6.69; their secondary structures were mainly composed of α-helices and random coils. Subcellular localization prediction showed that CcMYC12 was predominantly localized in the nucleus. Phylogenetic analysis revealed that the CcMYC genes were clustered into three distinct groups. Interspecific collinearity analysis indicated that segmental duplication events occurred in the CcMYC gene family, and collinear orthologs of CcMYC1, CcMYC4 and CcMYC5 were identified in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa, respectively. Analysis of cis-acting elements in the promoter regions suggested that the expressions of CcMYC genes may be induced by light, diverse plant hormones, as well as defense and stress stimuli. Protein-protein interaction (PPI) analysis further revealed that CcMYC3, CcMYC7, CcMYC8 and CcMYC11 may play vital roles in regulating the biosynthesis and accumulation of secondary metabolites including flavonoids and terpenoids in C. camphora. Conclusion A total of 12 MYC family members have been identified from the genome of C. camphora. Among them, CcMYC1 and CcMYC8 are highly expressed in the D-borneol chemotype and citral chemotype, while CcMYC11 and CcMYC12 exhibit high expressions in the linalool chemotype. These genes may contribute significantly to the biosynthesis and accumulation of essential oil main components, terpenoids and other secondary metabolites in different chemotypes of C. camphora.

    Screening and Functional Analysis of a Triphenyl Phosphate-tolerant Mutant in Arabidopsis thaliana
    FAN Fan, LI Meng-jiao, YANG Xian-peng, CUI Li-li
    2026, 42(7):  226-235.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1096
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    Objective Triphenyl phosphate (TPHP) is a common environmental organic pollutant that poses threats to both human health and ecological security. Elucidation of the molecular mechanism underlying Arabidopsis thaliana tolerance to TPHP toxicity provides a reference for future phytoremediation strategies for TPHP-contaminated soil. Method Wild-type A. thaliana (Col-0) was used as the experimental material for TPHP exposure treatment and phenotypic analysis of root length, fresh weight, and chlorophyll content. A mutant with tolerance to TPHP toxicity was identified from an A. thaliana mutant library based on significantly altered phenotype. Map-based cloning and whole-genome resequencing analyses were then employed to identify the candidate mutant gene, with validation via exogenous hormone application. Finally, molecular docking, overexpression lines, and mutant analyses were conducted to preliminarily investigate the potential molecular mechanism of TPHP tolerance in A. thaliana. Result The root length, fresh weight, and chlorophyll content in wild-type Col-0 seedlings reduced significantly after treatment with 2 mg/L TPHP. A TPHP-tolerant mutant, designated ems-29d (ems-29 dwarf), was isolated based on phenotypic screening. This mutant was dwarf with dark green and wrinkled leaves. Resequencing analysis revealed the key gene DWF4 involved in brassinosteroids synthesis in mutants, containing C1179T single-nucleotide variation, resulting in a leucine-to-phenylalanine substitution at position 306 (L306F) in the DWF4 protein. Exogenous application of 2,4-epibrassinolide (eBL) partially restored the growth inhibition phenotype of ems-29d. Molecular docking simulations revealed a lower binding energy between TPHP and the mutant DWF4L306F compared to that with the wild-type DWF4. However, the overexpression of DWF4L306F in transgenic lines did not enhance TPHP tolerance, indicating that the resistance was not target-site mediated. Finally, following TPHP treatment, the suppression of chlorophyll content was significantly milder in the DWF4 T-DNA insertion mutant dwf4 than in the wild-type, demonstrating that impairment of BR biosynthesis markedly enhances A. thaliana tolerance to TPHP. Conclusion The mutation in DWF4 in ems-29d disrupts brassinosteroids synthesis, thereby increasing plant tolerance to TPHP toxicity.

    Cloning and Function Analysis of MfWRKY22 Gene in Medicago falcata
    ZHAO Jing-wei, CHANG Na, JIN Xiao-wei, ZHANG Li-quan
    2026, 42(7):  236-245.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0930
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    Objective To explore the role of MfWRKY22 transcription factor in response to salt, drought and low temperature stresses in Medicago falcata, and to provide a theoretical basis for further investigating the molecular mechanism of MfWRKY22 in M. falcata responding to the abiotic stresses. Method Based on the RNA-Seq data of M. falcata treated with salt and drought, MfWRKY22 gene and its promoter sequence were cloned respectively by RT-PCR and Genome Walker method, and the bioinformatics, gene expression, subcellular localization and transcriptional activation activity analysis were performed. Meanwhile, the OE-MfWRKY22 transgenic Arabidopsis lines were constructed, and the fresh weight, root length and lateral root number of transgenic Arabidopsis seedlings were determined respectively at the day 10 of salt, drought and low temperature stresses treatments. Result The CDS of MfWRKY22 is 1 017 bp, encoding a protein with 338 amino acids, with predicted molecular mass of 37.05 kD and an isoelectric point of 5.65. MfWRKY22, localized in the nucleus and with transcriptional activation activity, is a Group Ⅱ member. A 1 888 bp sequence of MfWRKY22 promoter was obtained, and the cis-acting elements, such as salt stress induction, drought responsive, osmotic stress responsive, ethylene responsive and W-box, were identified. Meanwhile, it was found that the MfWRKY22 gene had the highest expression in the leaves of M. falcata, and the expressions of MfWRKY22 gene in the roots, stems and leaves were up-regulated after salt, drought and low temperature treatment. Under salt, drought and low temperature stresses, the fresh weight, root length and lateral root number of transgenic Arabidopsis seedlings were higher than that of wild seedlings. Conclusion MfWRKY22, whose expression is up-regulated by salt, drought and low temperature stresses,is a Group Ⅱ WRKY transcription factor member, and the overexpressing MfWRKY22 could improve the growth of transgenic plants under abiotic stresses.

    Overexpression of RcELIP1 from Racomitrium canescens Enhances the Tolerance to Drought and High Temperature in Transgenic Arabidopsisthaliana
    CAO Wan-di, BAO Wei, SUN Tian-guo, LIANG Shu-ting, QIN Xu-yang, ZHANG Mei-juan, SHA Wei, PENG Yi-fang, MA Tian-yi
    2026, 42(7):  246-256.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1065
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    Objective This study investigated the function of the early light-induced protein (ELIP) gene RcELIP1 from the moss Racomitrium canescens in conferring tolerance to drought and high-temperature stress, and also preliminarily explored the underlying mechanisms, aiming to provide further theoretical insight into the role of bryophyte ELIPs in plant stress responses. Method The expression patterns of RcELIP1 in R. canescens during dehydration, rehydration, and 45 ℃ high-temperature stress were analyzed using quantitative real-time PCR (RT-qPCR), the characteristics of the encoded protein were predicted via bioinformatics tools, the coding sequence of RcELIP1 was cloned into an overexpression vector and transformed into Arabidopsis thaliana to generate transgenic lines, phenotypic differences between transgenic and wild-type plants under drought and high-temperature stress were compared, and physiological and biochemical indices were measured. Result RT-qPCR analysis confirmed that RcELIP1 expression was significantly altered in response to both dehydration and high-temperature stress. RcELIP1 comprises 216 amino acid residues, it was predicted to contain a chlorophyll a/b-binding domain, and was characterized as a hydrophilic, unstable transmembrane protein localized to chloroplasts. Under drought and high-temperature stress, transgenic RcELIP1-overexpressed A. thaliana showed significantly higher survival rates than wild-type plants, the transgenic lines also maintained higher chlorophyll and proline content, elevated antioxidant enzyme activities, and lower malondialdehyde levels. Conclusion The overexpression of RcELIP1 enhances plant tolerance to drought and high-temperature stress, likely through mechanisms involving chloroplast protection, increased osmotic regulation, and improved antioxidant capacity.

    Screening, Identification, and Whole-genome Analysis of a Cadmium-tolerant Plant Growth-promoting Bacterium
    GUO Jia-xin, WANG Meng-xia, MA Yao-wu, ZHANG Qi-yu, ZHANG Zhen-yu, LIU Hai-tao, PEI Jiu-bo, JIANG Ying
    2026, 42(7):  257-268.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1193
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    Objective This study aimed to isolate cadmium-tolerant plant growth-promoting bacteria from heavy metal-contaminated soil, evaluate their cadmium resistance and growth-promoting functions, and provide microbial resources for the bioremediation of cadmium-polluted farmland and the development of plant growth-promoting biofertilizers. Method Soil samples from Weihui county, Xinxiang city, Henan province were used to isolate strains using a cadmium-containing medium. Potassium solubilization, siderophore production, and indole-3-acetic acid (IAA) production were determined by flame photometry, chrome azurol S (CAS) assay, and the Salkowski colorimetric method, respectively. Dominant strains were further identified through morphological, physiological, biochemical, and 16S rDNA sequencing analyses, and whole-genome sequencing was performed. Bioinformatics tools were used for genome assembly, functional annotation, and mining of genes related to cadmium resistance and plant growth promotion. Wheat and maize seed germination experiments were conducted to analyze the effects of bacterial strains on germination rate, shoot length, and root length under cadmium stress. Result Eight cadmium-tolerant strains were isolated. Strain F2 showed the strongest tolerance to cadmium and was identified as Bacillus altitudinis. After 72 h of culture in LB medium with 50 mg/L Cd2+, strain F2 demonstrated a cadmium removal rate of 27.59%, produced 31.72 μg/mL IAA, released 23.10 mg/L soluble potassium, and showed siderophore production with a relative activity of 65.30%. Whole-genome sequencing revealed a chromosome size of 3 718 742 bp, a GC content of 41.34%, and 3 726 predicted genes, along with 79 tRNA and 24 rRNA genes. Functional annotation indicated that the strain carried multiple genes associated with heavy metal tolerance and plant growth promotion. Under cadmium stress, strain F2 significantly increased the germination rate, shoot length, and root length of wheat and maize seeds. Conclusion Bacillus altitudinis F2 is a cadmium-tolerant strain with multiple plant growth-promoting traits. Whole-genome analysis reveals the genetic basis for its cadmium resistance and growth-promoting capabilities. The strain significantly enhances seed germination and seedling growth under cadmium stress, demonstrating its potential for use as a microbial fertilizer.

    Identification and Functional Analysis of Disease Prevention and Growth Promotion of Bacillus velezensis BPC37
    SU Yan-yan, ZUO Qiang, SONG Zhi-shuang, MU Lin-ying, LYU Jia-yin, XIAO Zi-min, LU Zhi-jun, XIE Hua
    2026, 42(7):  269-279.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0934
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    Objective This study aimed to clarify the biological characteristics of Bacillus velezensis BPC37 and its application potential in plant disease prevention and growth promotion, providing high-quality strain resources and theoretical basis for microbial inoculant development. Method The strain was identified through morphological observation, 16S rRNA gene sequencing, whole-genome average nucleotide identity (ANI) and DNA-DNA hybridization (DDH) analysis. Antibacterial activity was determined by plate confrontation method, and the control effect on lettuce soft rot was evaluated by pot experiment. Salt-alkali tolerance, biofilm formation ability, indole-3-acetic acid (IAA) production, and characteristics of phosphate solubilization, potassium solubilization and enzyme production were analyzed by specific medium screening and quantitative determination. The growth-promoting effects on lettuce and sweet potato were verified by pot experiments, and disease resistance and growth-promoting related functional genes were mined through whole-genome sequencing. Result BPC37 was identified as Bacillus velezensis. It showed significant antagonistic effects against 6 species of plant pathogenic bacteria including Xanthomonas campestris campestris, with the inhibition zone diameter of 8.95 mm against X. campestris campestris. After treatment with BPC37, the incidence and lesion area of soft rot in lettuce (Lactuca sativa) decreased by 57.28% and 52.98% respectively, and the disease index dropped by 20%. The strain tolerated 10% NaCl concentration and pH 5.0-9.0 environment, and produced biofilm, IAA (4.8 μg/mL), cellulase and protease. Pot experiments showed that inoculation with BPC37 increased lettuce fresh weight by 66.28% and dry weight by 50.12%, and increased tuber fresh weight of sweet potato (Ipomoea batatas) by 14.50%. Whole-genome analysis revealed 20 disease resistance-related genes (involved in bacillaene, bacilysin synthesis, etc.) and 29 growth-promoting related genes (involved in biofilm formation, IAA synthesis, etc.). Conclusion Bacillus velezensis BPC37 has excellent disease prevention and growth promotion characteristics, salt-alkali tolerance, and carries abundant functional genes in its genome, which can be used as an excellent candidate strain for microbial inoculant development.

    Identification of a Biocontrol Strain Isolated from Tobacco Rhizosphere and Its Biocontrol Potential Analysis
    WEI Xiao, LI Yan-yan, YUAN Qin-feng, YAO Jing-wu, CAO Chun-xia, HUANG Da-ye
    2026, 42(7):  279-291.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1076
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    Objective The purpose of this study is to determine the taxonomic status of biocontrol strain YC25, evaluate its antibacterial ability, deeply analyze its genomic characteristics and potential of secondary metabolites, and elucidate its mechanism of induced disease resistance to tobacco (Nicotiana tabacum L.) plants, so as to provide theoretical basis and technical support for the development of efficient and environmentally friendly biocontrol agents for tobacco soil-borne diseases. Method The strain YC25 was identified by morphological, physiological, biochemical and molecular biological methods. The antibacterial ability was evaluated by confrontation test, and whole genome sequencing and secondary metabolite prediction were performed. The effect of YC25 treatment on gene expression in tobacco plants was analyzed by transcriptomics. Result The strain YC25 was identified as Bacillus spizizenii and showed broad-spectrum antagonistic activity against 9 plant pathogenic fungi. Field experiments showed that the combination of strain YC25 and metalaxyl effectively controlled tobacco root rot and reduced the amount of metalaxyl. The whole genome sequencing showed that the total length of the genome was 4 120 588 bp, the average GC content was 43.85%, and the coding genes were 4 045. A total of 13 secondary metabolite synthesis gene clusters were predicted, encoding antimicrobial active substances such as Surfactin, Bacillaene, Fengycin, Bacillibactin, Subtilosin and Bacilysin. Transcriptome analysis showed that a total of 205 differentially expressed genes (DEGs) were induced in tobacco after YC25 application, of which 119 were up-regulated and 86 were down-regulated. Several genes involved in plant stress response and immune response were up-regulated, including FLS2, CaM, CYP84A, ERF1, ERF038, bHLH041, bHLH92 and PR-1. Conclusion YC25 demonstrates the comprehensive ability to inhibit pathogens and induce plant resistance to disease, and thus has the potential to be further developed as a biological pesticide.

    Degradation of Corn Stover by Composite Microbial Consortia QY12-A4 and Purification of Antioxidant Lignin from Its Products
    LI Bo-yu, JIAN Chun-chen, HOU Jia-jun, QIAN Ming-yan, YANG Wen-qin, ZHANG Sheng-long, ZANG Chuan-gang, MA Fu-kai, ZHENG Long, GUAN Hong
    2026, 42(7):  292-303.  doi:10.13560/j.cnki.biotech.bull.1985.2026-0026
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    Objective Corn stover is a rich renewable biomass resource, with its lignin attracting significant attention for value-added applications. The effective utilisation strategies for corn stover are explored to develop the antioxidant lignin. Method A microbial consortiun for corn stover degradation was constructed by the solid-state fermentation (SSF) with serial subculture at high temperature. The stability of the microbial consortium and the diversity of its microbial community were analyzed using 16S rRNA high-throughput sequencing technology. The capacity of the microbial consortium to degrade corn stover was evaluated by measuring the fermentation weight loss rate and analyzing the components after SSF. Lignin (SSF-A) was extracted from SSF using the alkali extraction and acid precipitation method. SSF-A was separated and purified using macroporous adsorption resin D101 column chromatography and Sephadex G-50 gel filtration column chromatography. Result Using corn stover as the substrate, a high-temperature-resistant microbial consortium QY12-A4 was obtained through high-temperature subculturing and domestication. At the genus level, QY12-A4 tended to be stable, and the dominant genera were Nonomuraea, Thermobacillus, Caldibacillus, and Cohnella. The weight loss rate of corn stover fermented by QY12-A4 was 25.26%±1.49% (w/w). The extraction rate of SSF-A was 12.56%±0.90% (w/w), with a total phenolic content of 18.94%±0.41% (w/w) and IC50 for ABTS cationic radical scavenging activity of (158.00±4.24) μg/mL. GL2-1, GL2-2, and GL2-3 from SSF-A with progressively decreasing molecular weight were obtained by column chromatography technology. Among them, GL2-3 exhibited the highest total phenolic content of 19.65%±0.16% (w/w), with the UV transmittance <5.0% in the 200–320 nm wavelength range, and the greatest antioxidant activity, manifested as an ABTS cation radical scavenging activity with an IC₅₀ of (90.50±3.54) μg/mL, reducing power with an IC₅₀ of (1.38±0.02) mg/mL, and relative ORAC value of (3.14±0.03) mmol TE/g. Conclusion The microbial consortium QY12-A4 can effectively degrade the lignocellulose in corn stover. Column chromatography technology is an effective method for obtaining low-molecular-weight lignin with high antioxidant activity. This provides a valuable reference for the value-added utilisation of lignin from corn stover.

    Whole-genome Analysis and Functional Verification of a Phosphate-solubilizing Bacterium Isolated from Traditional Chinese Medicine Residues
    DING Hong-xia, GAO Gui-wen, HUANG Yu-lan, ZHAO Rui, HUANG Yi-bo, FENG He-xin, LONG Sha
    2026, 42(7):  304-314.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0949
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    Objective To clarify the phosphate-solubilizing mechanism of Acinetobacter sp. DF1 isolated from traditional Chinese medicine residues, and provide a theoretical basis and technical support for the construction of high-efficiency phosphate-solubilizing engineered strains and the development of biological bacterial fertilizers. Method The DF1 strain was cultured, and its genomic DNA was extracted for sequencing, assembly and functional annotation against multiple databases. The phosphate-solubilizing genes pqqB and pqqC were cloned, recombinant vectors were constructed and transformed into Escherichia coli. After screening and identification, the phosphate-solubilizing capacity of the recombinant strains was determined. Result The results showed that the genome of DF1 was 3 831 735 bp in full length with a GC content of 38.9%, which was predicted to contain 3 482 protein-coding genes and 91 non-coding RNAs, and was enriched in various functional genes related to phosphate-solubilizing metabolism. The key phosphate-solubilizing genes pqqB and pqqC were cloned, and recombinant expression vectors were constructed and transformed into E. coli. Positive recombinant strains were obtained through resistance screening and PCR identification. The results of the phosphate-solubilizing capacity assay demonstrated that both recombinant strains exhibited significant ability to solubilize inorganic and organic phosphorus, and secreted five organic acids including oxalic acid, tartaric acid, malic acid, acetic acid and citric acid, among which the citric acid secretion levels reached as high as (1 753.10 ± 156.38) mg/L and (1 720.30 ± 206.35) mg/L, respectively. Conclusion This study first clarifies the genomic characteristics of Acinetobacter sp. DF1 isolated from traditional Chinese medicine residues, elucidates the molecular mechanism of phosphate solubilization, and confirms that the pqqB and pqqC genes play a core role in the phosphate-solubilizing process.

    Isolation, Identification, and Whole-genome Sequencing Analysis of Murine-Derived Limosilactobacillus reuteri
    GAO Fei, ZHANG Yu-xi, MU Di, CHEN Zheng, CHEN Hong-yan
    2026, 42(7):  315-327.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0964
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    Objective Limosilactobacillus reuteri is a facultative anaerobic lactic acid bacterium commonly found in the intestines of vertebrates and mammals. This bacterium possesses various probiotic functions, such as cholesterol reduction, inhibition of pathogenic bacteria growth, and enhancement of immune function, making the isolation of strains highly applicable to the food fermentation industry crucial. Method MRS-CaCO3 medium was used to isolate and cultivate L. reuteri from mouse feces. Preliminary identification was conducted through morphological observation, Gram staining, and 16S rRNA sequence analysis. The identified strains were subjected to growth performance, stress resistance, and antibacterial efficacy tests. Whole-genome sequencing and annotation were performed to explore the probiotic mechanisms and safety of the strain at the genetic level. Result The isolated L. reuteri GF304 had no hemolytic activity and demonstrated promising growth performance. It showed strong tolerances to acid and bile salts, with high survival rates in artificial gastrointestinal fluids. Additionally, it effectively inhibited the growth of Escherichia coli and Staphylococcus aureus, indicating its probiotic properties. Whole-genome sequencing analysis revealed that the genome of L. reuteri GF304 contained no virulence or antibiotic resistance genes. Instead, it harbored stress resistance and probiotic genes related to heat shock tolerance, cold shock tolerance, acid resistance, bile salt tolerance, adhesion, antioxidant capacity, and organic acid synthesis. The most prevalent CAZy classifications for strain GF304 were GH and GT. Secondary metabolite analysis revealed that strain GF304 possesses Type Ⅲ Polyketide Synthase biosynthetic gene clusters and RiPP biosynthetic gene clusters. Conclusion Based on its secure genomic profile (absence of virulence and antibiotic resistance genes) and the abundance of probiotic-associated gene clusters, combined with its excellent growth, stress tolerance, and antibacterial properties, L. reuteri GF304 demonstrates significant potential for development as a probiotic preparation.

    A Study on the Gut Microbiome Mechanism of the Combination of Polygonatum sibiricum and Poria cocos for Prevention of Constipation due to ‘Pi’ Deficiency
    SUN Xian-qing, XIAO Nen-qun, TAN Zhou-jin
    2026, 42(7):  328-340.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1456
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    Objective To investigate the preventive effect and mechanism of Polygonatum sibiricum and Poria cocos (1∶3) compatibility on constipation due to ‘pi’ deficiency, and to provide experimental evidence for the Traditional Chinese Medicine (TCM) theory of “treating disease before it arises.” Methods Thirty SPF-grade KM mice were randomly divided into a normal group, a model group, and a Polygonatum sibiricum and Poria cocos group (1∶3). Using a preventive administration method, the Polygonatum sibiricum and Poria cocos group was intragastrically administered the medicinal liquid (1.95 g/(kg·d), twice daily) for 29 consecutive days; the model group and the normal group were given an equal volume of sterile water. During the 15-day modeling phase, the constipation due to ‘pi’ deficiency model was established in the model group and the Polygonatum sibiricum and Poria cocos group by intragastric administration of Folium Sennae decoction, restriction of water intake, and a low-fiber diet. After the experiment, fecal water content, serum gastrointestinal motility hormone (MTL, CCK, 5-HT, VIP) levels, colonic pathological changes, hepatic MDA content and SOD activity, and intestinal microbiota structure and function were measured. Results The fecal water content of the Polygonatum sibiricum and Poria cocos group was higher than that of the model group. Serum 5-HT content was higher than that of the model group (P=0.05), VIP content was significantly lower (P=0.013), MTL content was significantly higher (P<0.001), and CCK content was significantly higher (P=0.018) than that of the model group. Hepatic MDA content was significantly lower than that of the model group (P=0.030), and SOD activity was significantly higher (P<0.01); the colonic mucosal structure was intact, and the number of goblet cells was greater than that in the model group; the diversity of the intestinal microbiota approached that of the normal group, and the abundance of beneficial bacteria such as Actinobacteriota (P<0.001) and Bifidobacterium was significantly higher than that in the model group, while the abundance of harmful bacteria such as Proteobacteria and Escherichia_Shigella was significantly lower than that in the model group (P=0.040, P=0.037). Functional prediction of the intestinal microbiota indicated that the abundance of pathways such as amino acid metabolism and energy metabolism was restored, and the abnormal activation of pathways related to environmental stress adaptation was inhibited. Conclusion Preventive intervention with the Polygonatum sibiricum and Poria cocos (1∶3) combination improved the general condition and fecal characteristics of mice with constipation due to ‘pi’ deficiency, enhanced gastrointestinal motility, alleviated oxidative stress, protected colonic mucosal structure, and regulated gut microbiota dysbiosis. These findings suggest that this combination has a preventive effect against constipation due to ‘pi’ deficiency.

    Genome-Wide Association Analysis of Litter Size Trait in Four Goat Breeds in Southwest China
    JIANG Jing, LYU Shi-peng, CHEN Hao-lin, XIONG Ting, SUN Xiao-yan, LI Jie, CHEN Can-can, WANG Gao-fu, REN Hang-xing
    2026, 42(7):  341-350.  doi:10.13560/j.cnki.biotech.bull.1985.2025-0982
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    Objective Litter size is one of the most important economic traits in goats. This study aimed to identify genetic variants and candidate genes significantly associated with goat litter size. Method Four goat breeds from southwestern China (Youzhou Dark goats, Dazu Black goats, Chuanzhong Black goats, and Qianbei Ma goats) were used as experimental subjects. Historical lambing records from conservation farms were collected, and blood samples from 60 high-yielding and 54 low-yielding ewes were subjected to whole-genome resequencing at an average depth of 27.10×. Population genetic differentiation index (Fst) and genome-wide association study (GWAS) methods were employed to identify loci strongly associated with the target trait. The most likely candidate genes were identified through gene annotation, haplotype analysis, and GO and KEGG enrichment analyses. Result A total of 65 candidate SNPs were identified, distributed within four Fst-significant selective sweep regions on chromosome 2, 4, and X. Five candidate genes potentially associated with the litter size trait were predicted. Among them, the COL4A5 and COL4A6 genes were significantly enriched in signaling pathways such as the ECM-receptor interaction and PI3K-Akt. The significant variant sites annotated to the COL4A6 and ETV1 genes each formed a haplotype block. Furthermore, Hap1 showed highly significant differences in litter size compared to other haplotypes (P<0.01). Conclusion Multiple variant loci significantly associated with litter size traits were detected. Genes such as COL4A5, COL4A6, ETV1, SP3, and PLS3 were identified as potential candidate genes influencing goat litter size traits, which may provide new perspectives for the genetic improvement and selective breeding of high-fertility goats in southwestern China.

    Heterologous Expression and Enzymatic Properties of the Processive Endoglucanase BvCel5
    PENG Hai-yan, LIU Jia-xin, SHI Yu-han, LI Xian-zhen, GUO Xiao-yu, YUAN Yue
    2026, 42(7):  351-360.  doi:10.13560/j.cnki.biotech.bull.1985.2025-1159
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    Objective To construct the BvCel5 gene encoding a processive endoglucanase from Bacillus velezensis into Bacillus subtilis RIK 1285 for expression, and to investigate its enzymatic properties. This lays the foundation for the enzyme’s further development and utilization. Method BvCel5 was constructed into the pBE-S vector via restriction enzyme digestion and ligation, then transferred into B. subtilis RIK 1285 for heterologous expression. nickel ion affinity chromatography was used to purify the protein. Using carboxymethyl cellulose sodium (CMC) as substrate, the BvCel5 activity, enzymatic properties, and sustained degradation capacity were determined via the 2,5-dinitrosalicylic acid (DNS) and 2,2-bicinchoninate assay (BCA) method. Finally, the BvCel5 product was analyzed using thin-layer chromatography (TLC) and ion chromatography (IC) with CMC, Whatman filter paper, and microcrystalline cellulose PH-101 as substrates. Result The expression vector pBE-S-BvCel5 and recombinant strain were successfully constructed, enabling the secretory expression and purification of BvCel5 (molecular weight 56.3 kD) . The purified enzyme exhibited an enzyme activity of (47.48 ± 0.78) U/mg. Enzymatic characterization revealed an optimal temperature of 60 ℃ and pH of 5.5. The enzyme exhibited thermal stability within 25-55 ℃ and maintained over 90% relative activity across a pH range of 3.5-12. Titration and persistent degradation analyses confirmed that BvCel5 possessed both endo-cellulase activity and persistent degradation capability. The primary degradation products of CMC by BvCel5 were cellobiose (34.07%) and cellotriose (47.15%). The enzyme also presented degradation activity towards Whatman filter paper and Avicel PH-101. Conclusion BvCel5 was successfully expressed in Bacillus subtilis, showing excellent enzymatic properties with potential for industrial application.

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    2026, 42(7):  352. 
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    2026, 42(7):  353. 
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    2026, 42(7):  354. 
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