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    26 December 2021, Volume 37 Issue 12
    Genome-wide Identification of Gro/Tup1 Gene Family in Camellia sinensis and Their Expression Analysis Under Exogenous Phytohormones and Abiotic Stress Treatments
    ZHAN Dong-mei, ZHU Chen, ZHOU Cheng-zhe, HUANG Xue-ting, LAI Zhong-xiong, GUO Yu-qiong
    2021, 37(12):  1-12.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0184
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    The objective of this work is to clarify the number and structure of the co-transcription regulatory factor Groucho/Thymidine uptake 1(CsGro/Tup1)in Camellia sinensis genome,and its expression differences under abiotic stresses and exogenous phytohormones treatments,which will lay a theoretical foundation for revealing the role of Gro/Tup1 in hormone signal transduction pathway and its role in C. sinensis tree stress. The CsGro/Tup1 family members were identified and analyzed. Meanwhile,the physicochemical properties of its encoded proteins,evolutionary relationships,and cis-acting elements of CsGro/Tup1s were investigated,and the relative expression levels of CsGro/Tup1 members were measured under drought,low temperature,GA3,ABA and MeJA treatments. The results showed that the CsGro/Tup1 family had 13 members,which were divided into two subfamilies:TOPLESS/TOPLESS-related(TPL/TPR)and LEUNIG/LEUNIG HOMOLOG(LUG/LUH). The prediction results of cis-acting elements showed that Gro/Tupls’ promoter region had a large number of cis-acting elements in response to GA,ABA,MeJA,drought and low temperature. RT-qPCR results demonstrated that Gro/Tup1s presented different expression patterns under different treatments. In severe drought,the expressions of CsLUG3 and CsLUG4 genes were significantly up-regulated,the expressions of CsTPL2 were inhibited at light drought,CsTPL8 and CsTPL9 were not regulated by drought. The expressions of CsTPL2 and CsTPL3 were significantly up-regulated under low temperature treatment. Under GA3 treatment,most gene expressions were up-regulated. Under ABA treatment,the expressions of most genes significantly increased in the beginning and significantly decreased later. Most of the gene expressions were significantly inhibited under MeJA treatment. In conclusion,C. sinensis has 13 CsGro/Tup1 family members,and their structures are evolutionarily conservative,and CsGro/Tup1s are able to respond to different abiotic stresses and exogenous phytohormone,and their responses present various profiles.

    Cloning and Transformation of MsAP2 Gene in Medicago sativa
    SHI Xin-yue, SHANG Xiao-yao, ZHOU Ling-fang, ZHANG Tie-jun, CHAO Yue-hui
    2021, 37(12):  13-21.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0497
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    Alfalfa(Medicago sativa)is an important leguminous forage plant. Studying the function of MsAP2 provides theoretical guidance and material basis for exploring the signal transduction network of MsAP2,and also provides some reference for alfalfa biotechnology breeding technology. The MsAP2 was cloned by RT-PCR,and the 3302-3flag-AP2 plant expression vector was constructed by DNA recombination technology. The M. sativa was transformed by Agrobacterium-mediated method,and the regenerated plants were identified by transgene detection,gene expression analysis,determination of endogenous hormones(abscisic acid,cytokinin,auxin and gibberellin)and phenotype identification. The results showed that the MsAP2 transgenic M. sativa plants were successfully obtained. Compared with the wild type,the MsAP2 gene expression and hormone levels of transgenic plants were significantly changed. The transgenic plants demonstrated premature senescence,the leaf shape and size changed,the root growth was inhibited and the number of branches changed.

    Analysis on the Dynamic Process of Bacillus ramie Degumming
    WU Ya, LIU Yi, SHU Tong, WANG Hui-hui, LI Pan-deng, YANG Ying, YU Long-jiang
    2021, 37(12):  22-28.  doi:10.13560/j.cnki.biotech.bull.1985.2020-1395
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    Ramie fiber is known as the “king of natural fiber” and is widely used in textile industry. Degumming is the key step to have its textile application. However,a lot of acid and alkali under high temperature and pressure are used in the conventional chemical degumming process,which consumes large amounts of energy and seriously pollutes the environment. Microbial degumming technology is currently a research hotspot due to its advantages in energy saving and environmental protection. In order to solve the common problems of low efficiency and unevenness in microbial degumming,an effective strain Bacillus sp. LY11 screened by the authors’ team was used for degumming of ramie fibers. The dynamic variations of the concentration of bacteria,the enzyme activities,the contents of reducing sugar,the residual gum rate,the gum contents and the surface morphology of ramie fibers during the degumming process were studied to reveal the changing rules of the microbial degumming process. This work provides theoretical and experimental guidance for the optimized control of microbial degumming and its large-scale industrial applications.

    Effect of Root Rot on Arbuscular Mycorrhizal Fungi Community in Root Zone Soil of Lycium barbarum L.
    LV Yan, WANG Wen-bin, GOU Qi, WANG Ying-na, LI Jing-yu, LIU Jian-li
    2021, 37(12):  29-40.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0190
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    This paper aims to explore the effects of root rot pathogen infection on the community composition of arbuscular mycorrhizal fungi(AMF)in the root zone of Lycium barbarum L.,for laying a foundation in later applying AMF to control the root rot of L. barbarum L. The roots and soil samples of healthy and infected L. barbarum L. in three cultivation sites(Yinchuan and Zhongning county of Ningxia Hui Autonomous Region,and Jingyuan county of Gansu province)were collected. Wet sieve precipitation method and AMF colonization staining method were used to analyze the spore composition and density,mycorrhizal infection rate of AMF and the correlation between AMF diversity and soil physical and chemical factors. The results demonstrated that there was no significant difference in spore density,total mycorrhizal infection rate and T-GRSP content after the healthy L. barbarum L. plants were invaded by the pathogen of root rot,while the EE-GRSP content in Zhongning county significantly increased. The AMF community composition in the root zone soil of healthy and infected L. barbarum L. plants in different sites varied significantly(R 2=0.875,P=0.001). The dominant genus and species in Zhongning and Jingyuan county was changed,while that in Yinchuan site was unchanged. The root rot changed the soil AMF community structure in the root area of L. barbarum L. in Ningxia,such as the α-diversity increasing in Yinchuan,but no impact on the α-diversity in Zhongning and Jinghuan. There were significance among AMF spore density,species abundance,total mycorrhizal infection rate and soil physicochemical properties,and soil physicochemical properties did not affect the species diversity of AMF,but affected AMF colonization.

    Exploration of the Transcriptional Regulation of Agrobacterium tumefaciens vbp2 Promoter
    XU Nan, XU Yu-juan, SUN Pan, ZONG Ren-jie, GUO Min-liang
    2021, 37(12):  41-49.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0151
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    Agrobacterium tumefaciens is able to transfer DNA fragments(T-DNA)from its plasmid to plant cells in the form of T-complex and to integrate the T-DNA into the genome of host plants,thereby it has been used as an effective transgenic vector for plant. vbp2 is one of the three homologous genes encoding VBPs,and VBPs are involved in the transport of T-DNA by binding with the VirD2 in the T-complex. Bioinformatics analysis showed that there might be several transcriptional regulation elements in the promoter region of vpb2 gene. The vbp2 in the chromosome of A. tumefaciens was in situ replaced by the rfp encoding red fluoresce protein(RFP)using homologous recombination method,so that promoter of vbp2 controlled the expression of rfp. Therefore,the activity of vbp2 promoter can be characterized by the fluorescence intensity of the expressed RFP. The results showed that acetosyringone(AS)and rhamnose(Rha)both were able to induce the vbp2 promoter to expresse RFP. The optimal concentrations of AS and Rha for the induction were 150 μmol/L and 100 μmol/L,respectively. The test of the transcriptional activity of the truncated vbp2 promoter regions revealed that transcriptional regulation elements induced by AS and Rha were located on the regions of 165-260 bp and 126-165 bp upstream of the vbp2 gene,respectively.

    Effects of Different Cultivation Substrates on the Laccase Activities of Lentinula edodes During Liquid Fermentation
    XIONG Xue, LI Peng, ZHANG Gui-he, XIANG Zhun, TAO Wen-Guang, ZHOU Guang-yan, HE Yao-wei
    2021, 37(12):  50-59.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0844
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    The aims are to explore the laccase-producing capacities of different Lentinula edodes strains in Guizhou and obtain a high-yield laccase cultivation substrate,and therefore lay a theoretical foundation for increasing and improving the yield and quality of L. edodes,for achieving the purpose of revitalizing the mushroom industry in Guizhou. Taking Guizhou L. edodes 808,Qingke R20 and Guizhou’s unique Masang L. edodes as the research objects,the discriminative identification of the three species of L. edodes strains was preliminarily studied through antagonistic reaction,phylogenetic tree and temperature tests. And the main cultivation substrates of L. edodes were used as an inducer,the changing pattern on the laccase production activities of three different L. edodes strains in liquid fermentation for 12 consecutive days were studied. Although Masang L. edodes,L. edodes 808 and Qingke R20 were all subordinate branches of organic L. edodes,and there were differences among the strains,meaning there were certain provenance differences. The liquid laccase activity of L. edodes was significantly affected by the genetic differences of the strains and the 4 different induction media(P<0.001),and the laccase activity showed a trend of increasing first and then decreasing under each treatment. The laccase activity of L. edodes was lower under all treatments in the early stage of culture,higher in the middle and late stages of culture,and the peak value was mainly concentrated in the 8-11 d. Compared with the strain Qingke R20 and Masang L. edodes,L. edodes 808 had the strongest liquid laccase-producing capacity in the induction medium containing corn cob,Coriariane palensis sawdust and Quercus acutissima sawdust,and their maximum enzyme activity was 464.06,238.64 and 288.94 U/L,respectively. However,wheat bran was more inducible to Qingke R20,with the maximum enzyme activity reaching 265.07 U/L. In addition,wheat bran presented the most concentrated and rapid response time for inducing laccase production from Masang L. edodes,with the maximum enzyme activity reaching 161.83 U/L. However,the high level of inducibility was more durable in C. palensis sawdust,with the maximum enzyme activity reaching 108.61 U/L. In conclusion,there are differences among the three strains of Masang L. edodes,L. edodes 808 and Qingke R20,meaning that there were certain provenance differences. From the perspective of laccase production level,L. edodes 808,Qingke R20 and Masang L. edodes had great differences in lignin degradation and absorption capacity of 4 substrates,and their best substrates were corn cob,wheat bran and C. palensis sawdust,respectively.

    Bioinformatics,Subcellular Localization and Expression Analysis of erg4 in Penicillium expansum
    HAN Zhan-hong, ZONG Yuan-yuan, ZHANG Xue-mei, WANG Bin, PRUSKY Dov, BI Yang
    2021, 37(12):  60-70.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0141
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    Ergosterol,a fungus-specific component in cell plasma membranes,plays an essential role in fungal growth and development. The erg4 gene encodes the catalytic enzyme for the last step of ergosterol synthesis,whereas,the function of this gene in Penicillium expansum is unknown. In this study,the full-length CDSs of erg4A,erg4B and erg4C in P. expansum were cloned by RT-PCR,and their genes’ structures,transmembrane domain and hydrophobicity of the erg4 encoded proteins were analyzed via bioinformatics. The subcellular localizations of 3 proteins were also analyzed by fusion green fiuorescent protein method. In addition,the expression differences of 3 genes in different growth stages,different medium conditions,and dark and blue light conditions were measured. The full-length CDSs of erg4A,erg4B and erg4C were 1 476 bp,1 491 bp and 1 596 bp,respectively,and the number of encoded amino acids were 491,496 and 531,respectively. The encoded proteins were all transmembrane proteins and presented hydrophobicity. The co-localization results of green fluorescent protein and endoplasmic reticulum fluorescent probe showed that Erg4A,Erg4B and Erg4C were all located in endoplasmic reticulum. There were significant differences in the expressions of erg4A,erg4B and erg4C in spore,spore germination and mature mycelium stages. The expression of erg4A had no significant variation in the three stages,while the expressions of erg4B and erg4C were significantly up-regulated,and that of erg4B was the most obvious. There was no significant variation in the expression of erg4A under CY liquid and solid culture conditions. The expressions of erg4B and erg4C under CY liquid culture conditions were significantly higher than those under solid culture conditions,and the up-regulation of erg4B was the most obvious. The expressions of erg4A and erg4B under blue light were significantly higher than those under dark conditions,and the up-regulation of erg4B was the most obvious. erg4C was not sensitive to blue light condition. In conclusion,Erg4A,Erg4B and Erg4C were all located in the endoplasmic reticulum,and the expressions of erg4A,erg4B and erg4C vaied significantly in different growth stages,solid and liquid cultural conditions,and dark and blue light culture conditions,among which erg4B was the most active.

    Characteristics of Aureobasidium sp. 3A00493 from Deep Sea Sediment and Characteristic Analysis of Its Extracellular Polysaccharide
    PAN Jing-yu, CHEN Jia-le, QIAN Yu-cheng, LIU Xin, YANG Hao-ning, LIU Li, WEI Bu-yun, ZHAO Hong-xin
    2021, 37(12):  71-81.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0119
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    Pullulan is a natural microbial polysaccharide with high developed value produced by fungus Aureobasidium sp. But different strains present great differences in polysaccharide yield,biological activities and by-products. Therefore,it has always been the focus of researchers to find the excellent strains with high sugar production,strong bacteriostatic activity and less by-products. The original strain is an extracellular polysaccharide-producing microorganism isolated from deep seabed sediments in the Pacific Ocean. On the basis of its morphological and microscopic observation as well as molecular identification,the strain was identified as its genus. The growth characteristics and optimal polysaccharide production conditions were determined via changing the culturing conditions. Five common microorganisms were selected as indicator bacteria,and the antibacterial activity was determined by filter paper method,and the structure of polysaccharides was analyzed by thin layer chromatography and infrared spectroscopy. The original strain 3A00493 was marine-sourced Aureobasidium pullulans,its colony was milky white,its cell and mycelium grew in converted way,and its ITS and 18S rDNA partial sequences shared homology of ≥98% with reported Aureobasidium sp. Its optimal growth temperature was 26℃ and optimal growth pH was 4,under which the polysaccharide yield reached 24.58 g/L. The metabolites of the strain 3A00493 had well antibacterial activity against 4 pathogenic indicator microorganisms. TLC and IR spectra showed that the extracellular polysaccharide produced by the strain 3A00493 was consistent with the pullulan standard sample,thus it was determined as pullulan. In conclusion,original strain 3A00493 is a new marine-sourced A. pullulans producing pullulan,being strong antibacterial activity of its metabolite,and having little pigment byproduct. This work lays a theoretical foundation for further studying marine-sourced pullulan-producing 3A00493,providing a new strain in seeking marine-sources microbial polysaccharide,also providing references for screening and developing marine resources microorganisms.

    Product Analysis of Degrading Aflatoxin B1 by a Strain Bacillus subtilis
    TANG Ying, HUANG Jia, DENG Zhan-rui, YANG Xiao-nan
    2021, 37(12):  82-90.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0179
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    This work aims to enrich the resources of biodegradable aflatoxin B1 and study the degradation mechanism and toxicity of the product. Triple quadrupole liquid chromatography-tandem mass spectrometry(UPLC-MS/MS)and 1H NMR were combined to detect the degraded products of aflatoxin B1(AFB1)by a strain Bacillus subtilis WTX1,and the cell toxicology tests on the degradation products were performed. The degrading mechanism of AFB1 by the strain WTX1 was to destroy the structures of furan ring dihydrogen double bond,vanillin aliphatic ring and pentenone ring to form small molecule compounds and to achieve detoxification effect. The cell toxicology test confirmed that the degraded products by strain WTX1 was basically non-toxic to cells. The degradation mechanism of strain WTX1 is to destroy the toxicity and mutation-causing structure of AFB1 and to produce small molecule compounds. The product of degraded AFB1 by WTX1 is not mutagenic and toxic to cells. The later study of the main role of substances from strain degrading AFB1 would provide a new idea for industrial removal of AFB1 toxin.

    Optimization of Fermentation Conditions for Production of Feed Containing Functional Components from Distiller’s Grains by Mixed Bacteria Fermentation
    FAN En-di, JIANG Meng-ying, FENG Min-xue, CHEN Ye-fu, XIAO Dong-guang, GUO Xue-wu
    2021, 37(12):  91-103.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0153
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    In order to optimize the fermentation conditions and produce distiller’s grains rich in functional components,the steam explosion pretreatment of distiller’s grains was used as the main raw material,and the strains screened in the early stage was as fermentation strains. The effects of bran addition amount,loading amount,initial pH value,fermentation time,fermentation temperature,and inoculum amount,on the solid-state fermentation of distiller’s grains were studied by taking the crude protein content and nicotinic acid content as the main indexes,and the crude fiber content and acetoin content as the secondary indexes. The results showed that the optimal fermentation conditions were as follows:bran addition 5%,loading 80 g,initial pH 3.70,fermentation time 5 d,fermentation temperature 30℃ and inoculum 10%. Compared with those before optimization,the content of crude protein increased by 1.56%(35.21%),the content of crude fiber decreased by 33.11%(12.73%),the content of nicotinic acid increased by 290.32%(1.21 mg/g distiller’s grains),and the content of acetoin remained unchanged(37.30 mg/g distiller’s grains).

    Effects of Weathered Coal Additives on the Odor and Microbial Community Diversity During Cow Manure Aerobic Composting
    ZHAO Xu, WANG Wen-li, LI Juan
    2021, 37(12):  104-112.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0032
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    This study aims to understand the effects of different added amounts of weathered coal on the release of odor and the diversity of microbial communities during the composting process of cow manure. Taking fresh cow manure as the main material and adding 5%,10% and 15% weathered acid coal respectively to carry out a 50-day composting test,the effect of the weathered acid coal addition on the compost microbial community was analyzed by Biolog ECO flat panel detection technology. When the amount of added weathered coal was 5%-10%,the high temperature duration of composting treatment was 23-25 d,which was 3-5 d longer than that of CK treatment(20 d);the average AWCD value,average Shannon index and average Simpson of the weathered coal treatment were 22.27%-28.47%,2.32%-6.06% and 23.21%-30.48% higher than the CK treatment,respectively; the seed germination index of compost product was 6.53%-13.06% higher than the CK treatment; NH3 and H2S release were 20.82%-39.74% and 25.17%-45.21% lower than the CK treatment respectively. In summary,adding 5%-10% weathered coal may increase the microbial diversity in the composting process,promote the succession of microbial populations,accelerate the transformation and metabolism of different substances,promote the decomposing process of the compost,and reduce the release of odor.

    Optimization of Indole-degrading Conditions in Pig Manure Waste Water by Enteroccus hirae IDO5 and Analysis of Its Corresponding Degradation Pathway
    YU Qin, MA Xian-yong, DENG Dun, WANG Yong-fei
    2021, 37(12):  113-123.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0071
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    A highly efficient indole-degrading bacterium strain IDO5 was identified in the present study. Herein,the indole-degrading ability of IDO5 in pig manure waste water was mainly investigated. Firstly,IDO5 was identified by morphology and 16S rRNA sequence analysis,and the degrading effect of IDO5 on indole and the types of substrates were preliminary analyzed. Secondly,the effects of rotational speed,temperature,pH and carbon source on the degradation of indole in pig manure waste water by IDO5 were compared. Finally,the structure and degradation pathway of indole degraded by IDO5 were analyzed by GC-MS. The results showed that IDO5 could not only use indole as the carbon source for growth,but also degrade 3-methylindole,phenol,cresol and other pollutants,thus IDO5 had a broad substrate spectrum. The optimal conditions for IDO5 degrading indole in the pig manure were as:temperature 37oC,pH 9 and rotary speed 170 r/min. Under these conditions,98.2% of indole in the pig manure wastewater was degraded within 24 h,i.e.,the removal rate was quite high. IDO5 removed 93.7% indole even when an additional 100 mg/L indole was added. IDO5 formed a red product during the degradation of indole. The degradation of indole by strain IDO5 may be through the pathway of indole → isatin → anthranilic acid → 2-methylbenzalde after analyzed by GC-MS. Strain IDO5 not only has strong indole-degrading ability in a wide pH range,but also can act on a variety of indole derivatives and other compounds. Therefore,strain IDO5 can effectively degrade indole in livestock and poultry breeding waste water under a wide range of conditions,and has certain application value.

    Effects of Total Glycosides of Qiwei Baizhu Powder on Intestinal Microbiota and Enzyme Activities in Diarrhea Mice
    XIE Guo-zhen, TANG Yuan, WU Yi, HUANG Li-li, TAN Zhou-jin
    2021, 37(12):  124-131.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0149
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    To explore the material basis of Qiwei Baizhu Powder(QWBZP)in dysbacteria diarrhea treatment,the total glycosides(TG)from QWBZP was extracted,and the effects of TG on the intestinal microecology of diarrhea mice were investigated. The results showed that TG was conducive to restoring the food intake and body weight of diarrhea mice. TG in medium dose helped the spleen index restored to normal level. All doses of TG promoted the proliferation of Bifidobacterium,Lactobacillus and Escherichia coli,and TG in a low dose significantly promoted the proliferation of BifidobacteriumP<0.01)and LactobacillusP<0.05). All doses of TG increased intestinal microbial activities(P<0.01),lactase activities(P<0.01)and sucrase activities(P<0.01 or P<0.05)in the mice with diarrhea. This study revealed that the effects of TG on beneficial bacteria,intestinal microbial activities and enzyme activities of the diarrhea mice were similar to that by the decoction of QWBZP. Glycosides are important pharmacological component of QWBZP in dysbacteria diarrhea treatment.

    Construction of Recombinant Pseudorabies Virus Expressing CD2v and P12 Proteins of African Swine Fever Virus
    LIANG Wang-wang, LI Cheng-long, CHEN Wen-zhi, FENG Zhi-hua, CAI Shao-li, CHEN Qi
    2021, 37(12):  132-140.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0024
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    ASF(African swine fever)and PR(pseudorabies)both are highly lethal and infectious diseases for pigs infected by African swine fever virus(ASFV)and pseudorabies virus(PRV),respectively. Both diseases have caused huge economic losses to the pig breeding industry and no commercial vaccine is available for preventing African swine fever. In this study,we inserted the ASFV(Pig/HLJ/18)CD2v(EP402R)and p12(O61R)genes into the PRV-Fa TK(UL23)and gI(US7)gene loci,respectively by CRISPR/Cas9 technology and classical viral strain PRV-Fa,and successfully constructed a recombinant attenuated strain PRV-∆gI-(P12)-∆TK-(CD2v)with deletion of TK and gI as well as expression of CD2v and P12. Gene sequencing,Western blotting and immunofluorescence analyses showed that the genetic traits of the recombinant strain were stable,and the CD2v and P12 were stably expressed in Vero cells. The one-step growth curve,plaque growth assay,mouse virulence test and pathological evaluation indicated that the virulence of the recombinant strain was significantly attenuated and not lethal to mice compared with the wild-type strain PRV-Fa. Therefore,the recombinant strain will become a new selection for researching of vaccine to prevent PR and ASF.

    Inhibitory Effects of Porcine Milk-derived Exosome on Porcine Epidemic Diarrhea Virus
    CHEN Ting, XIE Mei-ying, WEI Li-min, OUYANG Kun, CHENG Xiao, ZHANG Yong-liang
    2021, 37(12):  141-150.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0112
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    This work aims to explore the effects of porcine milk-derived exosome on porcine epidemic diarrhea virus in IPEC-J2 cells. We adapted crystal violet and MTT methods to measure cytoactive,and real-time-PCR and Western Blot to measure the expressions of PEDV virus and cell relative genes and proteins,respectively. The results showed that the porcine milk-derived exosome significantly inhibited the infectivity of PEDV virus to IPEC-J2 cells,and the cell survival rate and activity significantly increased(P<0.05). The M,N,ORF3,Spike,RNA polymerase and E genes of the virus inside the infected cells with PEDV and cell supernatant were extremely down-regulated(P<0.01). The PEDV virus N protein and IPEC-J2 cells’ apoptotic CLDN1 protein expressions were significantly inhibited by the porcine milk-derived exosome. Under different treatments,treatment 2(kill)and 3(repair)had no effect on the expressions of immune-related IFN-a and IRF3 genes respectively(P>0.05),and the other treatments extremely down-regulated the expression of pAPNP<0.01),but had no significant effect on the expression of NF-κB gene(P>0.05). All above results suggest that porcine milk-derived exosome under 3 different treatments may reduce the infectivity of the PEDV to the intestinal epithelial IPEC-J2 cells in piglets. It is speculated that its mechanism may reduce infectivity by inhibiting viral infection or replication-related genes on the one hand,and on the other hand,or enhance the resistance of cells to viruses by reducing intracellular apoptosis or increasing the expressions of immune-related genes t,so as to achieve the protective effect of piglet intestinal epithelial cells,but the specific regulation mechanism needs to be further investigated.

    Effect of PDK4 on the Lipid Metabolism of Goat Intramuscular Adipocytes
    ZHANG Hao, ZHANG Ya-nan, LI Xin, WANG Jia-mei, WANG Yong, ZHU Jiang-jiang, XIONG Yan, LIN Ya-qiu
    2021, 37(12):  151-159.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0368
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    This study aims to clone the goat PDK4 gene sequence,to clarify its tissue and temporal expression characteristics,and to clarify its effect on the lipid metabolism of goat intramuscular adipocytes. Overexpression and interference cell model of goat PDK4 was constructed,and RT-PCR and real-time fluorescent quantitative PCR were used to determine and study the effect of PDK4 on the lipid metabolism in goat intramuscular adipocytes. As results,the cloned goat PDK4 sequence was 1 808 bp,and it was located in mitochondria and cytoplasm. The expression pattern of goat PDK4 tissue and cell temporal expression was clarified,showing that PDK4 was highly expressed in the goat’s lung,triceps brachii muscle and liver tissue(P<0.01). The expression level in goat intramuscular adipocytes at 5 d of induction was significantly higher than that before differentiation(P<0.01). Interference and overexpression of goat PDK4 significantly reduced and increased lipid accumulation,respectively. The expression of lipid metabolism-related genes FABP3,CD36,ACACA,AGPAT6 and ADRP significantly(P<0.05)or extremely significantly(P<0.01)decreased with si-PDK4,while those genes extremely significantly increased(P<0.01)after overexpression of PDK4. In conclusion,PDK4 is expressed in goat tissues and in various stages of intramuscular preadipocyte differentiation. Overexpression of goat PDK4 promots the up-regulation of lipid droplet accumulation and lipid deposition-related gene expression in adipocytes,and shows the opposite trend and expression after interference.

    Regulation of Gene mapk1 in Danio rerio on Gene tp53
    BAO Lin-zhu, SHI Can, LU Ling-er, XU Xing, ZHOU Ze-bin, REN Jian-feng, LI Wei-ming, ZHANG Qing-hua
    2021, 37(12):  160-168.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0335
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    The objective is to investigate the regulation of zebrafish(Danio reriomapk1 gene on tp53 gene. The tp53 promoter sequence and mapk1 gene CDS sequence of zebrafish were analyzed by bioinformatics websites,and then the luciferase reporter gene plasmid pGL3-tp53-Luc and mapk1 expression plasmid pCMV-Tag2B-mapk1 were constructed. Finally,luciferase assay was used to verify the activity of tp53 promoter reporter gene and the effect of mapk1 gene on the activity of tp53 gene. The results showed that there was no CpG island site in the promoter region of tp53 gene in zebrafish,and there were 7 transcription factors binding sites,including Oct-1(TATGTAAAGC),Sp-1(AGATCCCGCC),c-Jun(CTGACGTCAC),CREB(CTGACGTCAC),CRE-BP1(CTGACGTCAC),NF-KappaB1(AGGGGAATCC),and RAR-alpha1(TTGAACTTTT). The amino acid consistency of MAPL1 between zebrafish and human and mouse was 91.33% and 90.79%,respectively. The tp53 promoter fragment sequence had high activity in both mammalian cell lines and fish cell lines,which were 17 times and 9 times that of the control group,respectively. After overexpression of pCMV-Tag2B-mapk1 plasmid in the HEK293T cells,the luciferase activity of pGL3-tp53-Luc was about 3 times that of the control group. This experiment verifies that zebrafish mapk1 may promote the expression of tp53.

    Biosynthesis of Ctenopharyngodon idella C-type Lysozyme Based on Recombinant Pichia pastoris and Its Antibacterial Activity
    YANG Yue, TAO Yan, XIE Jing, QIAN Yun-fang
    2021, 37(12):  169-179.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0256
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    C-type(Chicken-type)lysozyme,as an important protein immune factor in the endogenous immune system of grass carp(Ctenopharyngodon idella),can play an important role in the resistance of grass carp to pathogenic microorganisms,it is also a good choice for the development of green feed additives or biological antimicrobial agents. In the present study,the cDNA encoding grass carp C-type lysozyme(CilyC)was cloned by reverse transcription PCR(RT-PCR). Subsequently,two times of PCR were performed to add various necessary sites to its 5' and 3' ends. The CilyC was connected to the expression vector “pPICZαA” and then transferred into the engineering strain Pichia pastoris X-33;thus,the recombinant P. pastoris strain X-33/pPICZαA-CilyC was constructed. The recombinant strains with multiple copies of gene inserts were screened by using a medium containing high concentration of zeocin. Protein expression conditions for the recombinant strains were optimized and screened. The expression products were purified by nickel ion affinity chromatography,the purified protein was subjected to Western blot analysis and LC-MS/MS identification. In addition,the antibacterial activity of the recombinant strain expression products was detected by plate coating and MIC(minimum inhibitory concentration)method. The results showed that the X-33/pPICZαA-CilyC produced 13.7 mg/L recombinant protein under the optimal fermentation conditions(29oC,250 r/min,96 h,and 1% methanol). The recombinant protein was structurally identified as an expected CilyC protein with a molecular weight of 14.5 kD. The results of bacteriostatic tests showed that the recombinant CilyC had obvious biological activities against Gram-positive Staphylococcus aureus,Bacillus subtilis,Listeria monocytogenes and Bacillus cereus,as well as Gram-negative Pseudomonas aeruginosa and Salmonella. The recombinant P. pastoris strain “X-33/pPICZαA-CilyC” constructed in this study may effectively synthesize the grass carp C-type lysozyme,which lays a good foundation for the large-scale preparation of fish-derived C-type lysozyme.

    Regulations of Small-molecules Metabolites on Hexokinase and Pyruvate Kinase in Aspergillus niger
    MENG Xiao-jian, YU Jian-dong, ZHENG Xiao-mei, ZHENG Ping, LI Zhi-min, SUN Ji-bin, YE Qin
    2021, 37(12):  180-190.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0274
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    Aspergillus niger is an industrial strain for citric acid production. Three irreversible reactions in the glycolysis pathway are important regulation nodes for citric acid accumulation. However,there are only few studies regarding the metabolic regulation of hexokinase and pyruvate kinase. This study aims to unveil the regulation of metabolic intermediates on hexokinase and pyruvate kinase in A. niger. First,the genes encoding hexokinase and pyruvate kinase were overexpressed in A. niger and the proteins were purified by GST affinity chromatography. The specific enzyme activities of the recombined hexokinase and pyruvate kinase were(4.86±0.14)U/mg and(1.83±0.02)U/mg,respectively. Then,the effects of metabolites on the activities of hexokinase and pyruvate kinase were measured. Fructose-6-phosphate,phosphoenolpyruvate,ADP and ATP were the inhibitors of hexokinase. As to pyruvate kinase,fructose-1,6-diphosphate,malic acid and fumaric acid presented inhibitory effects,while its substrate ADP showed feed-forward activation. Finally,the molecular docking of key metabolites with enzymes was simulated. It discovered that substrate binding site Asn210 of hexokinase and vital sites of its adjacent amino acids and key metabolites;while the Thr416,Thr417 and Trp470 of the pyruvate kinase in the allosteric domain were the vital binding sites for key metabolites. In this study,we systematically identified the metabolic regulation of metabolites on the hexokinase and pyruvate kinase and predicted their allosteric regulatory sites,which deepens the understanding of the regulatory mechanism of glycolysis in A. niger.

    Construction of Mutants Swapping Ubiquitin E3 Ligase CHIP and E4B U-box Domain and Verification of Ubiquitination Activity
    FAN Yu-chen, LU Yao, LIU Xiang-nan, ZHAO Bo
    2021, 37(12):  191-197.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0230
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    This work aims to construct mutants of ubiquitin E3 ligases CHIP and E4B that exchange U-box domains and to study the effect of U-box domain on the activities of 2 U-box family ubiquitin ligases CHIP and E4B. By employing overlap PCR,a mutant CHIP named C+E that contained the U-box domain derived from E4B,and a mutant E4B named E+C whose U-box was replaced by the U-box domain from CHIP,were constructed respectively. These mutants’ plasmids and the substrate of CHIP named RCC2,the substrate of E4B named NIPSNAP1,and their common substrates p53 and CDC37 respectively were co-transfected into HEK-293T cells. Western Blot were adapted to detect the expressions of these substrates,CHIP,E4B and their mutants. Immunoprecipitation was to detect the ubiquitination of the substrates. The results showed that two mutants swapping the U-box domain were successfully constructed,and both of them were expressed in HEK-293T cells. Both mutants partially retained the activity on the ubiquitination of their respective substrates and C+E could have common substrates p53 and CDC37 in the ubiquitination.

    Expression and Purification of Cell-penetrating Peptide M918 Conjugate Antibody and Study on Its Uptake Efficiency
    LI Xue, LI Jun-min, ZHANG Lei, LI Shan
    2021, 37(12):  198-204.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0317
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    Application of cell-penetrating peptides in the field of drug delivery are limited in their due to the low uptake efficiency of target cells. In this study,genetic engineering methods were used to conjugate the cell penetrating peptide M918 with single-chain antibody targeting HER2,and the recombinant protein M918-scFv was expressed by Escherichia coli expression system and purified by nickel affinity chromatography. The microscale thermophoresis was applied to detect the affinity of the recombinant protein M918-scFv with the HER2 antigen. Laser confocal microscopy and flow cytometry were employed to detect the uptake efficiency of the recombinant protein. The results showed that the recombinant protein M918-scFv obtained by affinity chromatography was of high purity. Conjugating M918 did not affect the affinity of scFv and antigen. In HER2 positive cells,the uptake efficiency of the recombinant protein M918-scFv was 1.8 times that of scFv,indicating that M918-scFv exerted the penetration properties of cell-penetrating peptide M918 and presented higher uptake efficiency. Cell-penetrating peptide M918 conjugating with scFv not only demonstrated the cell-penetrating feature but also owned the targeting of scFv,thus it may provide a new targeted delivery strategy.

    Research Progress of F-box Protein Involved in Plant Stress
    XU Tao, XIA Dong-jian, WAN Jing, JIANG Shu-han, SONG Jiang-hua
    2021, 37(12):  205-211.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0203
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    F-box protein exists widely and plays an important role in plants. The F-box protein participates in the UPP(ubiquitin-proteasome pathway)to degrade proteins in organisms through synthesizing with Skp1,Cullin,Rbx1 to form Skp-Cullin-F-box(SCF)protein complex. The F-box protein is involved in the response process of plants to abiotic stress such as drought,salt,temperature and heavy metals,as well as biotic stress caused by pathogens and pests. This paper mainly reviewed the structure,action pathway,the latest progress and existing issues of F-box protein in the field of plant stress response,so as to provide reference for further study on the mechanism of F-box protein enhancing plant stress resistance.

    Research Progress in Treatment and Anti-inflammatory Molecular Mechanism of Cow Mastitis
    WANG Jin-peng, LUORENG Zhuo-ma, WANG Xing-ping, YANG Jian, JIA Li, MA Yun, WEI Da-wei
    2021, 37(12):  212-219.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0170
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    Cow mastitis is an inflammatory reaction of mammary tissue caused by pathogenic microorganisms infection,blood circulation disorders,physicochemical stimulation,etc. It is one of the common diseases of dairy cows,which seriously affects the economic benefits of the dairy industry. In recent years,aiming at continuously exploring and developing treatment methods for cow mastitis,domestic and foreign scholars have studied the roles and molecular mechanisms of various substances on bovine mammary gland inflammation. This paper summarized the pathogenic causes of cow mastitis,and focused on the latest research progress of bioactive substances,mineral elements,vitamins and biological agents in the treatment and anti-inflammatory molecular mechanism of cow mastitis,aiming to provide a reference for the studies of the prevention and precise treatment of mastitis in dairy cow.

    Research Advances on the Influence of Intestinal Microorganism on the Immune Effect of Vaccine
    CHEN Si-qian, WU Bian, LIU Chen-jian, LI Xiao-ran
    2021, 37(12):  220-226.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0162
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    In the early stage of human life,the intestinal tract has been exposed to bacterial environment. Normal intestinal microbiome can maintain the homeostasis of intestinal environment by forming microbial barrier,secreting secondary metabolites and regulating host immunity. The vaccine is a kind of drug that plays a role through the host immune response. There are few reports on the relationship between vaccines and intestinal microbiome. In recent years,it has been found that intestinal microbiome has a vital impact on vaccine preparations. This paper reviews the reports on the interactions between intestinal microbiome and vaccines,aiming to provide theoretical basis and guidance for vaccine research and development.

    Mechanism of Abnormal Chromosomal Segregation in Yeast Mitosis
    WEI Wen-qing, XIE Ze-xiong
    2021, 37(12):  227-234.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0616
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    Mitosis is the basis of cell genetics,proliferation and development in eukaryotes. It is mainly divided into S phase and M phase,of which M phase is an important process of cell division and transmission of genetic material. The correct segregation of chromosome is highly regulated by a variety of cellular mechanisms,and is the key to ensuring the integrity of the genetic information of the offspring cells. This article mainly uses typical eukaryotic yeast cells as the research model,and reviews the specific mechanisms of abnormal chromosome segregation and aneuploidy formation in the yeast during mitosis. There are four aspects including failure of spindle assembly monitoring mechanism,sister chromatid adhesion protein defect,kinetochore-spindle microtubule binding error,and polycentric pathway. The effects of aneuploidy on the yeast cells are also discussed,aiming to better understand the physiological and genetic characteristics of aneuploidy yeast.

    Advances in Biosensors Based on Platinum Nanoclusters
    WANG Peng-fei, YANG Min, ZHU Long-jiao, XU Wen-tao
    2021, 37(12):  235-242.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0247
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    In the past few decades,gold and silver nanoclusters(Au NCs and Ag NCs)have been extensively explored and used in industrial catalysis,optoelectronic devices,biological imaging,environmental testing,clinical diagnosis and treatment. However,as precious metal clusters,there is relatively little discussion about the biosensing application of platinum nanoclusters(Pt NCs). Pt NCs are of excellent reactivity,optical properties,catalytic activity,electrical conductivity and biocompatibility,and has been proven to be used in biosensing and medical imaging. In view of the above-mentioned excellent performance,we summarized Pt NCs from the perspective of synthesis and unique properties,and outlined their biological applications in sensing and imaging.

    Research Progress of Biosensing Mediated by the Thiol-ene Click Reaction
    ZHENG Shu-juan, TONG Tao, XU Wen-tao, HUANG Kun-lun
    2021, 37(12):  243-251.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0329
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    The thiol-ene click reaction is a metal-free catalytic click reaction,which is currently being widely used in molecular labelling,new material synthesis and material surface functionalization. This article describes the reaction mechanism of the thiol-ene click reaction,the factors affecting the reaction,and the biomarker technology mediated by the reaction. On this basis,the article discusses the applications of the sulfhydryl-ene click reaction in biosensing,cell imaging,and biofunctionalization of nanomaterials. Finally,the paper predicts future development direction and application prospects of the thiol-ene click reaction.

    Optimization and Application of Double-plasmid CRISPR-Cas9 System in Escherichia coli
    WANG Kai-kai, WANG Xiao-lu, SU Xiao-yun, ZHANG Jie
    2021, 37(12):  252-264.  doi:10.13560/j.cnki.biotech.bull.1985.2021-0618
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    In recent years,the CRISPR-Cas9(clustered regularly interspaced short palindromic repeats)system has been successfully exploited as versatile genome editing tools in various microorganisms. Because the application of CRISPR-Cas9 system is restricted only by the NGG of PAM(protospacer adjacent motif)sequence,therefore CRISPR-Cas9 system can theoretically edit any site or gene on the genome harboring NGG sequence. However,for the genes that have profound effects on cell growth and metabolism,the editing efficiency would be significantly reduced or even the mutants could not be obtained. Plenty of previous reports have provided valuable strategies to reduce the off-target effects of CRISPR-Cas9 system,but the reduction of editing efficiency is far from being solved. In this study,an efficient double- plasmid CRISPR-Cas9 system was established by using plasmids with different copy numbers to regulate the concentration of homology arms and the expression of Cas9 protein and gRNA,which would make them work more collaboratively for the gene editing purpose. The experimental results showed that the pfkA(6-phosphofructokinase isozyme 1)and pfkB(6-phosphofructokinase isozyme 2)genes in glycolysis pathway and the zwf(Glucose-6-phosphate 1-dehydrogenase)gene in pentose phosphate pathway were successfully deleted using the optimized double-plasmid CRISPR-Cas9 system,with the gene deletion efficiency of up to 100%;the nagABE gene cluster was also successfully replaced by glycerol kinase gene glpK,with the gene integration efficiency of 10%. By contrast,when using the single-plasmid CRISPR-Cas9 system,the pfkB gene deletion and glpK gene integration were successful in double-plasmid CRISPR-Cas9 system,and the efficiency of deleting pfkA and zwf increased by 31% and 63% respectively. The differences in carbon source utilization between mutant and wild-type strains further indicated that the gene editing efficiency was associated with special gene activity. Results from this study demonstrated that the sufficient target gene homology arms and the over-expression of gRNA may efficiently enhance the gene editing efficiency of CRISPR-Cas9 system.

    Comparison of 5 Methods of Evaluating the Expressions of Chimeric Antigen Receptors
    WANG Huan-yu, CHANG Hao-wan, ZHANG Chong-qi, JIN Wei-lin, WEI Fang
    2021, 37(12):  265-273.  doi:10.13560/j.cnki.biotech.bull.1985.2020-1511
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    This work is to compare 5 different methods for detection of novel chimeric antigen receptor(CAR). Stably expressing CAR cells were generated through lentiviral infection. Five methods,immunoglobulin G antibody staining,protein L staining,green fluorescent protein(GFP)co-expression,real-time fluorescent quantitative PCR and relative quantitative qPCR,were used to detect different novel CAR in Jurkat cells. Six lentiviral vectors expressing different CARs of Meso-CAR,Met-CAR,R132H-CAR1-2-GFP,R132H-CAR2-4-GFP,Dupixent-HL-CAR-GFP,and Dupixent-LH-CAR-GFP were successfully constructed,and their corresponding CAR stably-expressed Jurkat cells were obtained. The expressions of Meso CAR and Met CAR were detected by both immunoglobulin G antibody and protein L staining(better result with immunoglobulin G antibody staining),but the detection of the rest 4 CARs failed. GFP co-expression,absolute quantitative and relative quantitative methods of real-time fluorescent quantitative PCR can be utilized to indirectly detect the expression of CAR that was impossible with fluorescent staining,and there was certain correspondence among 3 methods. In conclusion,different approaches should be used to determine the expressions of CAR molecules for different novel CAR molecules,.

    Research on Evolution of Gene Editing Technology Based on Patent Analysis and Social Network Analysis
    LIU Jia, WEI Jia-qi, LIU Yu-qin, SHI Ge-ge, GUO Jing
    2021, 37(12):  274-284.  doi:10.13560/j.cnki.biotech.bull.1985.2020-1139
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    Gene editing has shown great application value in the fields of agriculture,industry and biomedicine. The research of its evolutionary trend and evolutionary law are of great significance to the relevant decision makers in formulating technology strategies. Based on the Derwent patent database,this article makes an overall analysis of the research progress of gene editing technology. The evolution process of the technology is revealed by analyzing the patent application situation,national and regional distribution,main patentees and core technology topics of gene editing technology. The results show that:1)From the perspective of patent application trend,gene editing technology is currently in a high-speed development stage. 2)The number of patent applications in developed countries is still in a dominant position,while China plays an important role in protecting patent intellectual property rights,attracting many high-quality patents. 3)Compared with foreign patentees,China’s patentees’ comprehensive strength has improved significantly,but there is still a lack of direct contact with enterprises. 4)The development direction of gene editing is mainly affected by social needs. Reducing potential risks through optimization technology is an important goal in the future.

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    2021, 37(12):  285-285. 
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    2021, 37(12):  286-286. 
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    2021, 37(12):  287-287. 
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